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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956967
Clone id TST39A01NGRL0027_C02
Library
Length 680
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_C02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GATTGAGGAGAAGTAGCAGACACAAGACCAGAGGCAAGCATTGGGCGCACAGGCTTCTCT
CTTTGAGAAGGAGTTGGAAGAGAAGAGGCTGCTTCTCAATGAGTTGGTTGATCAAGTTTC
CCATTCAGATAGACAATTGACAGAGGAGAAAGAGAAACATCTCTGTGTTTTTTGCTTGGA
TAAGCCTCATGACACTCATCATGCCCTACTTGCACTTCCATTATTGCTTCTGCTGCTTGA
TGCAGCATAAGCAGGCCAATGGTAGCACTTGTCCCACATGTAGGGGAAGCATCCAAGGGC
TTTGCATGTCATCTTTTCTGACATGAGAGGAAGAACTCTGCAACAATAATGGCATTTCCA
TGGGGAATATTTGTGGAGAACTTTGGCGATTGTGGCGAGAAGAGTGACACCCTTATTAAT
GGCACCATGTGTGTCAGTCATGTGCAGAGTTTTGTAAACCTCACATACAATATGACCATT
GTGCAACTTTGACTAGAGCTCTGGTTTTCCGTGGGTTATTGTTTCTCTTGCACATTAGCT
GCAGGGATATGGTGACACCTGCAAGAACTTCAGTACAGAAGTAACAATAGTTTGAGTTTG
TGTTAGTGAAGATGCTTGTTCCTATTATTTTTCTACTGGCTCGTTTTCTAGATAATTATC
TTGACTTCTCGCGATGCTGA
■■Homology search results ■■ -
sp_hit_id Q98VG9
Definition sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146)
Align length 69
Score (bit) 33.9
E-value 0.79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956967|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_C02, 5'
         (665 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavi...    34   0.79 
sp|Q8CJC5|LINCR_MOUSE E3 ubiquitin-protein ligase LINCR OS=Mus m...    32   3.9  
sp|Q80XL1|CBLC_MOUSE Signal transduction protein CBL-C OS=Mus mu...    31   5.2  
sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo s...    31   5.2  
sp|Q8TD23|ZN675_HUMAN Zinc finger protein 675 OS=Homo sapiens GN...    30   8.8  

>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus
            (strain FIPV WSU-79/1146) GN=rep PE=1 SV=2
          Length = 6709

 Score = 33.9 bits (76), Expect = 0.79
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  RKRNISVFFAWISLMTLIMPYLHFHYCFCCL-MQHKQANGSTCPTCRGSIQGLCMSSFLT 323
            R+ N    + +I L+ L++   HF Y F  + + HK A       C GS+Q    SSF+ 
Sbjct: 1908 RQLNKPALWRYIKLVLLLIALYHFFYLFVSIPVVHKLA-------CSGSVQAYSNSSFV- 1959

Query: 324  *EEELCNNN 350
             + E+C N+
Sbjct: 1960 -KSEVCGNS 1967


>sp|Q8CJC5|LINCR_MOUSE E3 ubiquitin-protein ligase LINCR OS=Mus
           musculus GN=Lincr PE=2 SV=1
          Length = 254

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 192 TLIMPYLHFHYCFCCLMQHKQANGSTCPTCRGSIQGLCMSSFLT*EE 332
           T +MP  H H+C  C   H   + + CP CR  I+ + + S L  EE
Sbjct: 207 TRLMPCGHSHFCGSCAW-HIFKDTARCPICRWQIEEVAVVSSLKAEE 252


>sp|Q80XL1|CBLC_MOUSE Signal transduction protein CBL-C OS=Mus
           musculus GN=Cblc PE=2 SV=2
          Length = 496

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 225 CFCCLMQHKQANGSTCPTCRGSIQG 299
           C CCL   + ++  TCP CR  I+G
Sbjct: 370 CSCCLAAWQDSDSQTCPFCRCEIKG 394


>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo
           sapiens GN=CBLC PE=1 SV=3
          Length = 474

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 225 CFCCLMQHKQANGSTCPTCRGSIQG 299
           C CCL   + ++  TCP CR  I+G
Sbjct: 371 CSCCLAAWQHSDSQTCPFCRCEIKG 395


>sp|Q8TD23|ZN675_HUMAN Zinc finger protein 675 OS=Homo sapiens
           GN=ZNF675 PE=1 SV=2
          Length = 568

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = -3

Query: 552 PYPCS*CARETITHGKPEL*SKLHNGHIVCEVYKTLHMTDTHGAINKGVTLLATIAKVLH 373
           PY C  C +  I   K     K+H+G I        +  +  G   K  + L T  ++  
Sbjct: 451 PYKCEECGKAFIQSSKLTEHKKIHSGEIP-------YKCEECGKAFKHSSSLTTHKRIHT 503

Query: 372 KYSPWKCHYCCRVLPLMSEKMTCKAL--GCFPYMWDKC 265
              P+KC  C +     S+    K +  G  PY  ++C
Sbjct: 504 GEKPYKCEECGKAFSRSSKLTEHKIIHTGEKPYKCERC 541
tr_hit_id Q3B0Q5
Definition tr|Q3B0Q5|Q3B0Q5_SYNS9 Putative uncharacterized protein OS=Synechococcus sp. (strain CC9902)
Align length 102
Score (bit) 39.3
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956967|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_C02, 5'
         (665 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3B0Q5|Q3B0Q5_SYNS9 Putative uncharacterized protein OS=Synec...    39   0.22 
tr|A2ENP8|A2ENP8_TRIVA Putative uncharacterized protein OS=Trich...    36   1.9  
tr|Q57UZ4|Q57UZ4_9TRYP Putative uncharacterized protein OS=Trypa...    28   2.0  
tr|B6SXI2|B6SXI2_MAIZE CBL-interacting serine/threonine-protein ...    35   4.2  
tr|A4RRY6|A4RRY6_OSTLU Predicted protein OS=Ostreococcus lucimar...    35   5.5  
tr|A9SP35|A9SP35_PHYPA Predicted protein OS=Physcomitrella paten...    29   5.5  
tr|Q4D2A5|Q4D2A5_TRYCR Putative uncharacterized protein OS=Trypa...    27   5.6  
tr|Q4D0Q6|Q4D0Q6_TRYCR Putative uncharacterized protein OS=Trypa...    27   5.6  
tr|Q7PP31|Q7PP31_ANOGA AGAP006444-PA OS=Anopheles gambiae GN=AGA...    34   7.1  
tr|B0LJR0|B0LJR0_9CORO Polyprotein 1a OS=Feline coronavirus GN=1...    34   9.3  
tr|B0LJQ9|B0LJQ9_9CORO Polyprotein 1ab OS=Feline coronavirus GN=...    34   9.3  

>tr|Q3B0Q5|Q3B0Q5_SYNS9 Putative uncharacterized protein
           OS=Synechococcus sp. (strain CC9902) GN=Syncc9902_0098
           PE=4 SV=1
          Length = 515

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
 Frame = -1

Query: 452 KLCT*LTHMVPLIRVSLFSPQSPKFSTNIPHGNAIIVAEFFLSCQKR*H--AKPLDASPT 279
           KLC+ LT ++P I++  + P S   + N+   + I+V+ F L+  +  H   K +  +P+
Sbjct: 380 KLCSKLTELIPSIKI--YEPASTTNTYNLIRDSKIVVSGFSLALIEAIHIGKKVITTTPS 437

Query: 278 CGTSATIGLLMLHQAAEAIMEVQVGHDECHEAYPSKKHRDVS 153
              SA I    L +  E   +++ G+ E  E  PSK H+ ++
Sbjct: 438 L-YSAFIPDFCLTKNHELSSQIRKGNKEIFETTPSKNHQQLA 478


>tr|A2ENP8|A2ENP8_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_100710 PE=4 SV=1
          Length = 584

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 192 TLIMPYLHFHYCFCCLMQHKQANGSTCPTCRGSI 293
           T+I+P  HF YC+ C ++  + +   CPTCRG +
Sbjct: 542 TMILPCGHFEYCYKCAVRACEVS-KICPTCRGRV 574


>tr|Q57UZ4|Q57UZ4_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.8.4570 PE=4 SV=1
          Length = 334

 Score = 28.5 bits (62), Expect(2) = 2.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 192 TLIMPYLHFHYCFCCLMQHKQANGSTCPTCRGSIQGL 302
           T+++P  H   C+ C    +    + CP CR  I+ L
Sbjct: 295 TMLLPCRHMCLCYECASMLRIQRNNACPICRVPIERL 331



 Score = 25.4 bits (54), Expect(2) = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 110 DQVSHSDRQLTEEKEKHLCVFCLDKPHDT 196
           D  ++SD +  E+ +  LCV CL    DT
Sbjct: 267 DLGANSDDENAEDDDDKLCVVCLTNERDT 295


>tr|B6SXI2|B6SXI2_MAIZE CBL-interacting serine/threonine-protein
           kinase 15 OS=Zea mays PE=2 SV=1
          Length = 513

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = -1

Query: 239 QAAEAIMEVQVGHDECHEAYPSKKHRDVSLSPLSIVYLNGKLDQPTH*EAASSLPTPSQR 60
           Q+ E+++      DE   + P ++ +D   +PL  + L+ +L  PT  E A  LP P Q 
Sbjct: 444 QSPESLLSPPETQDELRLSLPQQEGQDFLEAPLPSLSLD-QLKSPTAPEQAEQLPQPEQL 502

Query: 59  EKPVRP 42
           + P+ P
Sbjct: 503 QTPIAP 508


>tr|A4RRY6|A4RRY6_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_29182 PE=4 SV=1
          Length = 348

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 192 TLIMPYLHFHYCFCCLMQHKQANGS--TCPTCRGSIQGL 302
           T++ P LH  YC  C+ + +   GS   CP CR ++ GL
Sbjct: 305 TVVCPCLHLMYCSACIARLRDQGGSEARCPHCRCAMTGL 343


>tr|A9SP35|A9SP35_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82022 PE=4 SV=1
          Length = 484

 Score = 28.9 bits (63), Expect(2) = 5.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 204 PYLHFHYCFCCLMQHKQANGSTCPTCRGSIQGL 302
           P  H   CF C  Q  Q N STCP CR  I+ +
Sbjct: 447 PCGHRCTCFTC-GQRIQGNSSTCPICRQPIRAV 478



 Score = 23.5 bits (49), Expect(2) = 5.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 152 EKHLCVFCLDKPHD 193
           + HLC  CLD P D
Sbjct: 429 DHHLCNICLDAPKD 442


>tr|Q4D2A5|Q4D2A5_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511409.40 PE=4 SV=1
          Length = 363

 Score = 26.6 bits (57), Expect(2) = 5.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 192 TLIMPYLHFHYCFCCLMQHKQANGSTCPTCRGSI 293
           T ++P  H   C+ C    +    + CP CR +I
Sbjct: 324 TTLLPCRHMCLCYECASILRFQQNNRCPVCRSNI 357



 Score = 25.8 bits (55), Expect(2) = 5.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 143 EEKEKHLCVFCLDKPHDT 196
           EE+E  LCV CL  P DT
Sbjct: 307 EEEEIDLCVICLLNPKDT 324


>tr|Q4D0Q6|Q4D0Q6_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053509571.40 PE=4 SV=1
          Length = 363

 Score = 26.6 bits (57), Expect(2) = 5.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 192 TLIMPYLHFHYCFCCLMQHKQANGSTCPTCRGSI 293
           T ++P  H   C+ C    +    + CP CR +I
Sbjct: 324 TTLLPCRHMCLCYECASILRFQQNNRCPVCRSNI 357



 Score = 25.8 bits (55), Expect(2) = 5.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 143 EEKEKHLCVFCLDKPHDT 196
           EE+E  LCV CL  P DT
Sbjct: 307 EEEEIDLCVICLLNPKDT 324


>tr|Q7PP31|Q7PP31_ANOGA AGAP006444-PA OS=Anopheles gambiae
           GN=AGAP006444 PE=4 SV=4
          Length = 1208

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +1

Query: 283 GEASKGFACHLF*HERKNSATIMAFPWGIFVENFGDCGEKSDTLINGTMCVSHVQSFVNL 462
           G  ++G  C L  H   N   I   PW  +  N  DCG+ SD     T C       + L
Sbjct: 116 GGNAQGKQCALSEHTCTNGRCI---PWDKYCNNVNDCGDGSDEPRFCTRCNRTYYGNIGL 172

Query: 463 TYNMTI 480
           TYN+ +
Sbjct: 173 TYNLEL 178


>tr|B0LJR0|B0LJR0_9CORO Polyprotein 1a OS=Feline coronavirus GN=1 PE=4
            SV=1
          Length = 4031

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  RKRNISVFFAWISLMTLIMPYLHFHYCFCCL-MQHKQANGSTCPTCRGSIQGLCMSSFLT 323
            R+ N    + +I L+ L++   HF Y F  + + HK A       C GS+Q    SSF+ 
Sbjct: 1897 RQLNKPALWRYIKLVLLLIALYHFFYLFVSIPVVHKLA-------CSGSVQAYSNSSFV- 1948

Query: 324  *EEELCNNN 350
             + E+C N+
Sbjct: 1949 -KSEVCGNS 1956