DK956958 |
Clone id |
TST39A01NGRL0027_B17 |
Library |
TST39 |
Length |
611 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_B17. 5' end sequence. |
Accession |
DK956958 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGAAGTACTCAACCTGGAATTATCTATTCTTACTCTATCCAATCACCTGAACCAGAAACT GCACCAATTGTTATTAACACCCAAGTCGTTAACTTCAATCTCGTTGATTACATTGGTGTT TGGACCGTTACTTTAACTGTTTTTGACGGTTGCAGTACTCGCAATGTTACCAGAACTTTC ACTGTAAATTGTCAATGGACTCTTTCAGTTAACACAATTGCTGCTCAAACTAAAGTTTAT GGAAACAACAGATTTGACAGAGTTACTTTTGTACCAACTTTCACCACCAATTATCCTGAT GAATGGAATTACGCTTATGTTTGGGATGTTAGATCTGCTCCAGTTGATTCCCTCTTTGCA CCTTACAACACAACTGTAAACGAATTCGTTGGAACTACCACCAACACTGTTGGCCCAGTT CAAGTATCATCTGATCCTGATATTTGGACAATTACCACCACTGAAGTAATTGAAACCAGA AGAGTTAACACTGTCAGATATGTTACTTTAGCTAATGGTATTGCTGCTGAAAATTACGCT GTTTGCTTCAGTCCTGATTTATCTGGAACTTATACCGCTAGAATCCAAGTACAAGGATAT TGTGCTGGTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q09309 |
Definition |
sp|Q09309|YQS1_CAEEL Uncharacterized WD repeat-containing protein F21H12.1 OS=Caenorhabditis elegans |
Align length |
90 |
Score (bit) |
30.4 |
E-value |
7.5 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A0AEF4 |
Definition |
tr|A0AEF4|A0AEF4_RUMFL Putative cellulosomal scaffoldin protein OS=Ruminococcus flavefaciens |
Align length |
105 |
Score (bit) |
39.7 |
E-value |
0.14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956958|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_B17, 5' (611 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A0AEF4|A0AEF4_RUMFL Putative cellulosomal scaffoldin protein ... 40 0.14 tr|A7A7G0|A7A7G0_BIFAD Putative uncharacterized protein OS=Bifid... 36 2.0 tr|A1A309|A1A309_BIFAA Large protein with C-terminal fibronectin... 35 2.6 tr|A8UGE5|A8UGE5_9FLAO Putative uncharacterized protein OS=Flavo... 35 3.4 tr|Q9N3B9|Q9N3B9_CAEEL C-type lectin protein 83, confirmed by tr... 35 3.4 tr|B7LIU1|B7LIU1_ECOLX Putative lipoprotein OS=Escherichia coli ... 35 4.5 tr|B4CUS5|B4CUS5_9BACT Conserved repeat domain protein OS=Chthon... 35 4.5 tr|Q199F2|Q199F2_9PERO NADH-ubiquinone oxidoreductase chain 5 OS... 34 7.6 tr|Q22575|Q22575_CAEEL Putative uncharacterized protein OS=Caeno... 34 7.6 tr|Q4WCW1|Q4WCW1_ASPFU 2-dehydropantoate 2-reductase, putative O... 34 7.6 tr|B6ERT1|B6ERT1_ALISL Putative exported protein OS=Aliivibrio s... 33 10.0 tr|Q9N5K0|Q9N5K0_CAEEL Putative uncharacterized protein OS=Caeno... 33 10.0 tr|B6MG93|B6MG93_BRAFL Putative uncharacterized protein OS=Branc... 33 10.0 tr|B0YDI4|B0YDI4_ASPFC 2-dehydropantoate 2-reductase, putative O... 33 10.0
>tr|A0AEF4|A0AEF4_RUMFL Putative cellulosomal scaffoldin protein OS=Ruminococcus flavefaciens GN=scaB PE=3 SV=1 Length = 2071
Score = 39.7 bits (91), Expect = 0.14 Identities = 33/105 (31%), Positives = 43/105 (40%) Frame = +1
Query: 124 TVTLTVFDGCSTRNVTRTFTVNCQWTLSVNTIAAQTKVYGNNRFDRVTFVPTFTTNYPDE 303 T T T G +T + T T TV T T T V G+N D T +N PD Sbjct: 1716 TTTTTTVTGSNTPDTTTTTTVTGSNTPDTTTT---TTVTGSNTPDTTTTTTVTGSNTPDT 1772
Query: 304 WNYAYVWDVRSAPVDSLFAPYNTTVNEFVGTTTNTVGPVQVSSDP 438 V S D+ + TT + GTTT + GPV ++P Sbjct: 1773 TTTTTV--TGSNTPDTTTSTSATTSDTDTGTTTTSTGPVNPGTEP 1815
>tr|A7A7G0|A7A7G0_BIFAD Putative uncharacterized protein OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_01799 PE=4 SV=1 Length = 2022
Score = 35.8 bits (81), Expect = 2.0 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 15/147 (10%) Frame = +1
Query: 34 SIQSPEPETAPIVINTQVVNFNLV-DYIGVWTVTLTVFDGCSTRNVTRTFTVNCQWTLSV 210 S+ + + + +N Q + F DY G ++T T DG +N + TL + Sbjct: 1229 SVSATKAADGDLYVNDQTLRFTAPKDYAGPASITFTAVDGKRDKNDKVKIVNSAVLTLPI 1288
Query: 211 NTIAAQTK--VYGNNRFDRVTFVPTFTTN-----------YPDEWNYAYVWDVRSAPVDS 351 I + + ++ D V T + Y DE Y+Y V S VD+ Sbjct: 1289 TVIGREVPPPTFSSSTVDVVAGEKATTIDLTALTHSASGLYEDEKQYSYSGGVNSGSVDA 1348
Query: 352 LFAPYNT-TVNEFVGTTTNTVGPVQVS 429 +P T TV+ T +T V VS Sbjct: 1349 RVSPSGTLTVSADKTATPDTTVSVPVS 1375
>tr|A1A309|A1A309_BIFAA Large protein with C-terminal fibronectin type III domain OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=BAD_1311 PE=4 SV=1 Length = 2041
Score = 35.4 bits (80), Expect = 2.6 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 15/147 (10%) Frame = +1
Query: 34 SIQSPEPETAPIVINTQVVNFNLV-DYIGVWTVTLTVFDGCSTRNVTRTFTVNCQWTLSV 210 S+ + + + +N Q + F DY G ++T T DG +N + TL + Sbjct: 1248 SVSATKAADGDLYVNDQTLRFTAPKDYAGPASITFTAVDGKRDKNDKVKIVNSAVLTLPI 1307
Query: 211 NTIAAQTK--VYGNNRFDRVTFVPTFTTN-----------YPDEWNYAYVWDVRSAPVDS 351 I + + ++ D V T + Y DE Y+Y V S VD+ Sbjct: 1308 TVIGREVPPPTFSSSTVDVVAGEKATTIDLTALTHSTSGLYEDEKQYSYSGGVNSGSVDA 1367
Query: 352 LFAPYNT-TVNEFVGTTTNTVGPVQVS 429 +P T TV+ T T V VS Sbjct: 1368 RVSPSGTLTVSADKTATPGTTVSVPVS 1394
>tr|A8UGE5|A8UGE5_9FLAO Putative uncharacterized protein OS=Flavobacteriales bacterium ALC-1 GN=FBALC1_12527 PE=4 SV=1 Length = 782
Score = 35.0 bits (79), Expect = 3.4 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = +1
Query: 91 NFNLVDYIGVWTVTLTVFDGCSTRNVTRTFTVNCQWTLSVNTIAAQTKVYGNNRFDRVTF 270 +FN V+ G +TV +T +GCS +RT TVN + ++ +++ + +Y NN Sbjct: 591 SFNEVNETGTYTVIITDPNGCS---ASRTITVNPSSSATIESVSVE-GIYPNN------- 639
Query: 271 VPTFTTNYPDEWNYAYVWD 327 T T N + +Y Y D Sbjct: 640 --TITINVLGDGDYEYALD 656
>tr|Q9N3B9|Q9N3B9_CAEEL C-type lectin protein 83, confirmed by transcript evidence OS=Caenorhabditis elegans GN=clec-83 PE=2 SV=3 Length = 237
Score = 35.0 bits (79), Expect = 3.4 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 9/101 (8%) Frame = +1
Query: 163 NVTRTFTVNCQWTLSVNTIAAQTKV-----YGNNRFDRVTFVPTFTTNYPDEWNYA---- 315 N+ +N +W T+A Q K+ Y N + + PT++T+ YA Sbjct: 119 NIVAESVINGKW----RTLAGQQKLVFACSYNPNNVNPASTTPTYSTDASSS-TYAPYST 173
Query: 316 YVWDVRSAPVDSLFAPYNTTVNEFVGTTTNTVGPVQVSSDP 438 Y D +A S PY+T +TTNT GP S+ P Sbjct: 174 YATDSSTAGYGSSATPYSTD------STTNTYGPTDSSASP 208
>tr|B7LIU1|B7LIU1_ECOLX Putative lipoprotein OS=Escherichia coli GN=pilL PE=4 SV=1 Length = 355
Score = 34.7 bits (78), Expect = 4.5 Identities = 25/85 (29%), Positives = 41/85 (48%) Frame = +1
Query: 175 TFTVNCQWTLSVNTIAAQTKVYGNNRFDRVTFVPTFTTNYPDEWNYAYVWDVRSAPVDSL 354 +++VN QW ++N + A ++YG+ ++R T T P + +AP S Sbjct: 150 SWSVNDQWHRALNALLAGQQLYGHMDWNRKILTVTTTATPPVD---------LTAPQGSQ 200
Query: 355 FAPYNTTVNEFVGTTTNTVGPVQVS 429 A +T N F G+T GP QV+ Sbjct: 201 KAA-DTPRNPFRGSTATPAGPTQVT 224
>tr|B4CUS5|B4CUS5_9BACT Conserved repeat domain protein OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_0438 PE=4 SV=1 Length = 2728
Score = 34.7 bits (78), Expect = 4.5 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 8/137 (5%) Frame = +1
Query: 34 SIQSPEPETAPIVINTQVVNFNLVDYIG-VWTVTLTVFDGCSTRNVTRTFTVNCQWT--L 204 +I SP+P + P + ++ N G TVT + G + T T V QWT + Sbjct: 1389 TIGSPQPLSTPFGVTVTALDVNNAVVAGFTGTVTFSATAGVTVSPGTSTNFVGGQWTGNV 1448
Query: 205 SVNTIAAQTKVYGNNRFDRVTFVPTFTTNYPDEWNYAYVWDVRSAPVDSLFAPYNTTVNE 384 SV A T + N TFTT P V V A D ++ P + + Sbjct: 1449 SVTGAAGTTSLIATNSAGATGQSNTFTTTVP------VVSSVSLASNDLVYDPGTSRIYV 1502
Query: 385 FVGTT-----TNTVGPV 420 V +T NT+ P+ Sbjct: 1503 SVPSTDTSGRANTITPL 1519
>tr|Q199F2|Q199F2_9PERO NADH-ubiquinone oxidoreductase chain 5 OS=Percina macrolepida GN=ND5 PE=3 SV=1 Length = 612
Score = 33.9 bits (76), Expect = 7.6 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +2
Query: 239 METTDLTELLLYQLSPPIILMNGITLMFGMLDLL--QLIPSLHLTTQL*TNSLELPPTLL 412 M+T +T L +L+ I+ + G+ L + L QL P+ HLT +N L PT++ Sbjct: 481 MKTPIMTMPPLLKLAALIVTIGGLLLALELASLTSKQLKPTPHLTPHHFSNMLGFFPTII 540
Query: 413 AQFKYHLILIFGQ 451 +F L L+ GQ Sbjct: 541 HRFTPKLNLVLGQ 553
>tr|Q22575|Q22575_CAEEL Putative uncharacterized protein OS=Caenorhabditis elegans GN=T19D12.7 PE=2 SV=1 Length = 400
Score = 33.9 bits (76), Expect = 7.6 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = +1
Query: 58 TAPIVINTQVVNFNLVDYIGVWTVTLTVFDGCSTRNVTRTFTVNCQWTLSVNTIAAQTKV 237 T P+ + + +FNL D+ G++ T+ G T T TFTV+ W + N +KV Sbjct: 313 TPPLYNDVLIQSFNLTDHSGIYVCNGTLQIGNETSIETVTFTVSQSWDDNKNADLLDSKV 372
>tr|Q4WCW1|Q4WCW1_ASPFU 2-dehydropantoate 2-reductase, putative OS=Aspergillus fumigatus GN=AFUA_6G02620 PE=4 SV=1 Length = 759
Score = 33.9 bits (76), Expect = 7.6 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 10/143 (6%) Frame = +1
Query: 16 GIIYSYSIQSPEPETAPIVINTQVVNFNLVDYIGVWTVTLTVFDGCSTRNVTRTFTVNCQ 195 GI+ P+PE +P + +V N + W + T ++ +VT + + Sbjct: 3 GIVKRLPQHPPQPEMSPELTRACLVGSNAISAFLSWRLQAT-----TSCDVTLVWKSGFE 57
Query: 196 WTLSVNTIAAQTKVYGNNRFD--RVTFVPTFTTNYPDEWNYAY--------VWDVRSAPV 345 ++S ++ ++K YGN RF V P + + ++Y V+D+ S + Sbjct: 58 -SVSQYGVSFKSKTYGNERFKPRHVVRAPEEAASRENAYDYVILCVKALPDVYDLASV-I 115
Query: 346 DSLFAPYNTTVNEFVGTTTNTVG 414 +S+ P +T + + TTNT+G Sbjct: 116 ESVVTPQHTCI---LVNTTNTLG 135
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