DK956958
Clone id TST39A01NGRL0027_B17
Library
Length 611
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_B17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GGAAGTACTCAACCTGGAATTATCTATTCTTACTCTATCCAATCACCTGAACCAGAAACT
GCACCAATTGTTATTAACACCCAAGTCGTTAACTTCAATCTCGTTGATTACATTGGTGTT
TGGACCGTTACTTTAACTGTTTTTGACGGTTGCAGTACTCGCAATGTTACCAGAACTTTC
ACTGTAAATTGTCAATGGACTCTTTCAGTTAACACAATTGCTGCTCAAACTAAAGTTTAT
GGAAACAACAGATTTGACAGAGTTACTTTTGTACCAACTTTCACCACCAATTATCCTGAT
GAATGGAATTACGCTTATGTTTGGGATGTTAGATCTGCTCCAGTTGATTCCCTCTTTGCA
CCTTACAACACAACTGTAAACGAATTCGTTGGAACTACCACCAACACTGTTGGCCCAGTT
CAAGTATCATCTGATCCTGATATTTGGACAATTACCACCACTGAAGTAATTGAAACCAGA
AGAGTTAACACTGTCAGATATGTTACTTTAGCTAATGGTATTGCTGCTGAAAATTACGCT
GTTTGCTTCAGTCCTGATTTATCTGGAACTTATACCGCTAGAATCCAAGTACAAGGATAT
TGTGCTGGTCA
■■Homology search results ■■ -
sp_hit_id Q09309
Definition sp|Q09309|YQS1_CAEEL Uncharacterized WD repeat-containing protein F21H12.1 OS=Caenorhabditis elegans
Align length 90
Score (bit) 30.4
E-value 7.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956958|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_B17, 5'
(611 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q09309|YQS1_CAEEL Uncharacterized WD repeat-containing protei... 30 7.5
sp|A0QK47|Y4137_MYCA1 UPF0182 protein MAV_4137 OS=Mycobacterium ... 30 9.7
sp|Q73US5|Y3291_MYCPA UPF0182 protein MAP_3291c OS=Mycobacterium... 30 9.7
sp|Q8GZ17|COBL7_ARATH COBRA-like protein 7 OS=Arabidopsis thalia... 30 9.7

>sp|Q09309|YQS1_CAEEL Uncharacterized WD repeat-containing protein
F21H12.1 OS=Caenorhabditis elegans GN=F21H12.1 PE=4 SV=3
Length = 454

Score = 30.4 bits (67), Expect = 7.5
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Frame = +1

Query: 157 TRNVTRTFTVNC------QW--------TLSVNTIAAQTKVYGNNRFDRVTF--VPTFTT 288
TRN+ RTF+ +C W T S + A V R+ F + TF
Sbjct: 56 TRNIARTFSAHCLPVSCLSWSRDGRKLLTSSADNSIAMFDVLAGTLLHRIRFNSMVTFAM 115

Query: 289 NYPDEWNYAYVWDVRSAPVDSLFAPYNTTV 378
+P N A V V P F+P TV
Sbjct: 116 FHPRNDNKAIVLQVNKQPTVEQFSPRIQTV 145


>sp|A0QK47|Y4137_MYCA1 UPF0182 protein MAV_4137 OS=Mycobacterium
avium (strain 104) GN=MAV_4137 PE=3 SV=1
Length = 993

Score = 30.0 bits (66), Expect = 9.7
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3

Query: 192 TIYSESSGNIASTATVKNS*SNGPNTN-VINEIEVNDLGVNNNWCSFWFR*LDRVRI 25
T+Y+ +G IAS A +N PN N E VN +G N N S LD+ R+
Sbjct: 435 TVYTHGNGFIASPANTVRGIANDPNQNGGYPEFLVNVVGANGNVVSDGPAPLDQPRV 491


>sp|Q73US5|Y3291_MYCPA UPF0182 protein MAP_3291c OS=Mycobacterium
paratuberculosis GN=MAP_3291c PE=3 SV=1
Length = 993

Score = 30.0 bits (66), Expect = 9.7
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3

Query: 192 TIYSESSGNIASTATVKNS*SNGPNTN-VINEIEVNDLGVNNNWCSFWFR*LDRVRI 25
T+Y+ +G IAS A +N PN N E VN +G N N S LD+ R+
Sbjct: 435 TVYTHGNGFIASPANTVRGIANDPNQNGGYPEFLVNVVGANGNVVSDGPAPLDQPRV 491


>sp|Q8GZ17|COBL7_ARATH COBRA-like protein 7 OS=Arabidopsis thaliana
GN=COBL7 PE=1 SV=2
Length = 661

Score = 30.0 bits (66), Expect = 9.7
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1

Query: 7 TQPGIIYSYSIQSPEPETAPIVINTQV-VNFNLV-DYIGVWTVTLTVFD 147
T+ + ++Y Q P P P N V +N++L DY G WT +TVF+
Sbjct: 474 TELTVAWAYLKQRPVPNPMPCGDNCGVSINWHLATDYRGGWTARVTVFN 522


tr_hit_id A0AEF4
Definition tr|A0AEF4|A0AEF4_RUMFL Putative cellulosomal scaffoldin protein OS=Ruminococcus flavefaciens
Align length 105
Score (bit) 39.7
E-value 0.14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956958|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_B17, 5'
(611 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0AEF4|A0AEF4_RUMFL Putative cellulosomal scaffoldin protein ... 40 0.14
tr|A7A7G0|A7A7G0_BIFAD Putative uncharacterized protein OS=Bifid... 36 2.0
tr|A1A309|A1A309_BIFAA Large protein with C-terminal fibronectin... 35 2.6
tr|A8UGE5|A8UGE5_9FLAO Putative uncharacterized protein OS=Flavo... 35 3.4
tr|Q9N3B9|Q9N3B9_CAEEL C-type lectin protein 83, confirmed by tr... 35 3.4
tr|B7LIU1|B7LIU1_ECOLX Putative lipoprotein OS=Escherichia coli ... 35 4.5
tr|B4CUS5|B4CUS5_9BACT Conserved repeat domain protein OS=Chthon... 35 4.5
tr|Q199F2|Q199F2_9PERO NADH-ubiquinone oxidoreductase chain 5 OS... 34 7.6
tr|Q22575|Q22575_CAEEL Putative uncharacterized protein OS=Caeno... 34 7.6
tr|Q4WCW1|Q4WCW1_ASPFU 2-dehydropantoate 2-reductase, putative O... 34 7.6
tr|B6ERT1|B6ERT1_ALISL Putative exported protein OS=Aliivibrio s... 33 10.0
tr|Q9N5K0|Q9N5K0_CAEEL Putative uncharacterized protein OS=Caeno... 33 10.0
tr|B6MG93|B6MG93_BRAFL Putative uncharacterized protein OS=Branc... 33 10.0
tr|B0YDI4|B0YDI4_ASPFC 2-dehydropantoate 2-reductase, putative O... 33 10.0

>tr|A0AEF4|A0AEF4_RUMFL Putative cellulosomal scaffoldin protein
OS=Ruminococcus flavefaciens GN=scaB PE=3 SV=1
Length = 2071

Score = 39.7 bits (91), Expect = 0.14
Identities = 33/105 (31%), Positives = 43/105 (40%)
Frame = +1

Query: 124 TVTLTVFDGCSTRNVTRTFTVNCQWTLSVNTIAAQTKVYGNNRFDRVTFVPTFTTNYPDE 303
T T T G +T + T T TV T T T V G+N D T +N PD
Sbjct: 1716 TTTTTTVTGSNTPDTTTTTTVTGSNTPDTTTT---TTVTGSNTPDTTTTTTVTGSNTPDT 1772

Query: 304 WNYAYVWDVRSAPVDSLFAPYNTTVNEFVGTTTNTVGPVQVSSDP 438
V S D+ + TT + GTTT + GPV ++P
Sbjct: 1773 TTTTTV--TGSNTPDTTTSTSATTSDTDTGTTTTSTGPVNPGTEP 1815


>tr|A7A7G0|A7A7G0_BIFAD Putative uncharacterized protein
OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_01799
PE=4 SV=1
Length = 2022

Score = 35.8 bits (81), Expect = 2.0
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Frame = +1

Query: 34 SIQSPEPETAPIVINTQVVNFNLV-DYIGVWTVTLTVFDGCSTRNVTRTFTVNCQWTLSV 210
S+ + + + +N Q + F DY G ++T T DG +N + TL +
Sbjct: 1229 SVSATKAADGDLYVNDQTLRFTAPKDYAGPASITFTAVDGKRDKNDKVKIVNSAVLTLPI 1288

Query: 211 NTIAAQTK--VYGNNRFDRVTFVPTFTTN-----------YPDEWNYAYVWDVRSAPVDS 351
I + + ++ D V T + Y DE Y+Y V S VD+
Sbjct: 1289 TVIGREVPPPTFSSSTVDVVAGEKATTIDLTALTHSASGLYEDEKQYSYSGGVNSGSVDA 1348

Query: 352 LFAPYNT-TVNEFVGTTTNTVGPVQVS 429
+P T TV+ T +T V VS
Sbjct: 1349 RVSPSGTLTVSADKTATPDTTVSVPVS 1375


>tr|A1A309|A1A309_BIFAA Large protein with C-terminal fibronectin type
III domain OS=Bifidobacterium adolescentis (strain ATCC
15703 / DSM 20083) GN=BAD_1311 PE=4 SV=1
Length = 2041

Score = 35.4 bits (80), Expect = 2.6
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Frame = +1

Query: 34 SIQSPEPETAPIVINTQVVNFNLV-DYIGVWTVTLTVFDGCSTRNVTRTFTVNCQWTLSV 210
S+ + + + +N Q + F DY G ++T T DG +N + TL +
Sbjct: 1248 SVSATKAADGDLYVNDQTLRFTAPKDYAGPASITFTAVDGKRDKNDKVKIVNSAVLTLPI 1307

Query: 211 NTIAAQTK--VYGNNRFDRVTFVPTFTTN-----------YPDEWNYAYVWDVRSAPVDS 351
I + + ++ D V T + Y DE Y+Y V S VD+
Sbjct: 1308 TVIGREVPPPTFSSSTVDVVAGEKATTIDLTALTHSTSGLYEDEKQYSYSGGVNSGSVDA 1367

Query: 352 LFAPYNT-TVNEFVGTTTNTVGPVQVS 429
+P T TV+ T T V VS
Sbjct: 1368 RVSPSGTLTVSADKTATPGTTVSVPVS 1394


>tr|A8UGE5|A8UGE5_9FLAO Putative uncharacterized protein
OS=Flavobacteriales bacterium ALC-1 GN=FBALC1_12527 PE=4
SV=1
Length = 782

Score = 35.0 bits (79), Expect = 3.4
Identities = 24/79 (30%), Positives = 40/79 (50%)
Frame = +1

Query: 91 NFNLVDYIGVWTVTLTVFDGCSTRNVTRTFTVNCQWTLSVNTIAAQTKVYGNNRFDRVTF 270
+FN V+ G +TV +T +GCS +RT TVN + ++ +++ + +Y NN
Sbjct: 591 SFNEVNETGTYTVIITDPNGCS---ASRTITVNPSSSATIESVSVE-GIYPNN------- 639

Query: 271 VPTFTTNYPDEWNYAYVWD 327
T T N + +Y Y D
Sbjct: 640 --TITINVLGDGDYEYALD 656


>tr|Q9N3B9|Q9N3B9_CAEEL C-type lectin protein 83, confirmed by
transcript evidence OS=Caenorhabditis elegans GN=clec-83
PE=2 SV=3
Length = 237

Score = 35.0 bits (79), Expect = 3.4
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Frame = +1

Query: 163 NVTRTFTVNCQWTLSVNTIAAQTKV-----YGNNRFDRVTFVPTFTTNYPDEWNYA---- 315
N+ +N +W T+A Q K+ Y N + + PT++T+ YA
Sbjct: 119 NIVAESVINGKW----RTLAGQQKLVFACSYNPNNVNPASTTPTYSTDASSS-TYAPYST 173

Query: 316 YVWDVRSAPVDSLFAPYNTTVNEFVGTTTNTVGPVQVSSDP 438
Y D +A S PY+T +TTNT GP S+ P
Sbjct: 174 YATDSSTAGYGSSATPYSTD------STTNTYGPTDSSASP 208


>tr|B7LIU1|B7LIU1_ECOLX Putative lipoprotein OS=Escherichia coli
GN=pilL PE=4 SV=1
Length = 355

Score = 34.7 bits (78), Expect = 4.5
Identities = 25/85 (29%), Positives = 41/85 (48%)
Frame = +1

Query: 175 TFTVNCQWTLSVNTIAAQTKVYGNNRFDRVTFVPTFTTNYPDEWNYAYVWDVRSAPVDSL 354
+++VN QW ++N + A ++YG+ ++R T T P + +AP S
Sbjct: 150 SWSVNDQWHRALNALLAGQQLYGHMDWNRKILTVTTTATPPVD---------LTAPQGSQ 200

Query: 355 FAPYNTTVNEFVGTTTNTVGPVQVS 429
A +T N F G+T GP QV+
Sbjct: 201 KAA-DTPRNPFRGSTATPAGPTQVT 224


>tr|B4CUS5|B4CUS5_9BACT Conserved repeat domain protein
OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_0438
PE=4 SV=1
Length = 2728

Score = 34.7 bits (78), Expect = 4.5
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 8/137 (5%)
Frame = +1

Query: 34 SIQSPEPETAPIVINTQVVNFNLVDYIG-VWTVTLTVFDGCSTRNVTRTFTVNCQWT--L 204
+I SP+P + P + ++ N G TVT + G + T T V QWT +
Sbjct: 1389 TIGSPQPLSTPFGVTVTALDVNNAVVAGFTGTVTFSATAGVTVSPGTSTNFVGGQWTGNV 1448

Query: 205 SVNTIAAQTKVYGNNRFDRVTFVPTFTTNYPDEWNYAYVWDVRSAPVDSLFAPYNTTVNE 384
SV A T + N TFTT P V V A D ++ P + +
Sbjct: 1449 SVTGAAGTTSLIATNSAGATGQSNTFTTTVP------VVSSVSLASNDLVYDPGTSRIYV 1502

Query: 385 FVGTT-----TNTVGPV 420
V +T NT+ P+
Sbjct: 1503 SVPSTDTSGRANTITPL 1519


>tr|Q199F2|Q199F2_9PERO NADH-ubiquinone oxidoreductase chain 5
OS=Percina macrolepida GN=ND5 PE=3 SV=1
Length = 612

Score = 33.9 bits (76), Expect = 7.6
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2

Query: 239 METTDLTELLLYQLSPPIILMNGITLMFGMLDLL--QLIPSLHLTTQL*TNSLELPPTLL 412
M+T +T L +L+ I+ + G+ L + L QL P+ HLT +N L PT++
Sbjct: 481 MKTPIMTMPPLLKLAALIVTIGGLLLALELASLTSKQLKPTPHLTPHHFSNMLGFFPTII 540

Query: 413 AQFKYHLILIFGQ 451
+F L L+ GQ
Sbjct: 541 HRFTPKLNLVLGQ 553


>tr|Q22575|Q22575_CAEEL Putative uncharacterized protein
OS=Caenorhabditis elegans GN=T19D12.7 PE=2 SV=1
Length = 400

Score = 33.9 bits (76), Expect = 7.6
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1

Query: 58 TAPIVINTQVVNFNLVDYIGVWTVTLTVFDGCSTRNVTRTFTVNCQWTLSVNTIAAQTKV 237
T P+ + + +FNL D+ G++ T+ G T T TFTV+ W + N +KV
Sbjct: 313 TPPLYNDVLIQSFNLTDHSGIYVCNGTLQIGNETSIETVTFTVSQSWDDNKNADLLDSKV 372


>tr|Q4WCW1|Q4WCW1_ASPFU 2-dehydropantoate 2-reductase, putative
OS=Aspergillus fumigatus GN=AFUA_6G02620 PE=4 SV=1
Length = 759

Score = 33.9 bits (76), Expect = 7.6
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Frame = +1

Query: 16 GIIYSYSIQSPEPETAPIVINTQVVNFNLVDYIGVWTVTLTVFDGCSTRNVTRTFTVNCQ 195
GI+ P+PE +P + +V N + W + T ++ +VT + +
Sbjct: 3 GIVKRLPQHPPQPEMSPELTRACLVGSNAISAFLSWRLQAT-----TSCDVTLVWKSGFE 57

Query: 196 WTLSVNTIAAQTKVYGNNRFD--RVTFVPTFTTNYPDEWNYAY--------VWDVRSAPV 345
++S ++ ++K YGN RF V P + + ++Y V+D+ S +
Sbjct: 58 -SVSQYGVSFKSKTYGNERFKPRHVVRAPEEAASRENAYDYVILCVKALPDVYDLASV-I 115

Query: 346 DSLFAPYNTTVNEFVGTTTNTVG 414
+S+ P +T + + TTNT+G
Sbjct: 116 ESVVTPQHTCI---LVNTTNTLG 135