NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956923
Clone id TST39A01NGRL0027_A06
Library
Length 664
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_A06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TATATCTGTACCTACGCACTTCCACTTACAATAACTCCCACCATAGTTGTGTGCACCACA
CTATTCAAGTCTGTGTTCCTAATTCTGGGTTGAATTGTCATTATTTTACCATAGTCTCAA
CAGCGATAAGCAGGAAATGCATGCAGTGACCATGGGTAAGAAAAGGGTCATGGTGGGCGC
CATTAACACGATACTTATCCTACTCCTCTTGCAGTTTATGAAGCAATGTTCTTCCTCTTC
TAGTCATGATGATGATGGCGATGCCTTTGCGGATGACACTCTAAGCAGACGCAACGATAC
GGTCGAGTCTGCTCCTCGACATTGGCCAAGGCGAATGCTGGGCAGCCAAGAACCTGCCTC
CAACAAGACTTCATATGGTATTCCTGATCACAAACACAAGGTCACACACAAGAGCCCAAT
GGACGGAAGCAGGGCCTCAAGCTCTAACACCATTAATGTGCCTGAAGAAAAGGACCCAGG
AGACAGGTTGCAAGCTCAAGACTGTTCATCATCTTCGAGAGTGCATTGCGCAAACAATGG
CACATCAGGCATTGACCCACGGTATGGAGTGGAAAAGCGATTAGTACCTACCGGCCCAAA
TCCTCTGCACAATTGAAGCCGGTTTCCTTAAGTGGAGGGTCATCTCAAGGTGAATGAATC
TAGT
■■Homology search results ■■ -
sp_hit_id Q0GGX2
Definition sp|Q0GGX2|ZN541_MOUSE Zinc finger protein 541 OS=Mus musculus
Align length 63
Score (bit) 34.7
E-value 0.47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956923|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_A06, 5'
         (664 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0GGX2|ZN541_MOUSE Zinc finger protein 541 OS=Mus musculus GN...    35   0.47 
sp|Q8N5H7|SH2D3_HUMAN SH2 domain-containing protein 3C OS=Homo s...    34   0.61 
sp|Q8JZM4|DNER_MOUSE Delta and Notch-like epidermal growth facto...    32   2.3  
sp|Q8NFT8|DNER_HUMAN Delta and Notch-like epidermal growth facto...    32   2.3  
sp|Q60HH9|HEM2_MACFA Delta-aminolevulinic acid dehydratase OS=Ma...    31   6.7  
sp|P13716|HEM2_HUMAN Delta-aminolevulinic acid dehydratase OS=Ho...    31   6.7  
sp|Q8BH27|MEGF9_MOUSE Multiple epidermal growth factor-like doma...    30   8.7  
sp|Q7Z2V1|TNT_HUMAN Protein TNT OS=Homo sapiens GN=C16orf82 PE=2...    30   8.8  
sp|P0A5A5|PRIA_MYCTU Putative primosomal protein N' OS=Mycobacte...    30   8.8  
sp|P0A5A6|PRIA_MYCBO Putative primosomal protein N' OS=Mycobacte...    30   8.8  
sp|Q5R5M1|PRDM4_PONAB PR domain zinc finger protein 4 OS=Pongo a...    30   8.8  
sp|Q9UKN5|PRDM4_HUMAN PR domain zinc finger protein 4 OS=Homo sa...    30   8.8  

>sp|Q0GGX2|ZN541_MOUSE Zinc finger protein 541 OS=Mus musculus
           GN=Znf541 PE=1 SV=1
          Length = 1363

 Score = 34.7 bits (78), Expect = 0.47
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 347 QEPASNKTSYGIPDHKHKVTHKSPMDGSRASSSNTINVPEEKDPGDRLQAQD---CSSSS 517
           +E    + +YG P H H V ++ P  G R     ++  PE + PG  L  +D   C  SS
Sbjct: 227 KETPPEEEAYGDPTHNHDVANQPPPSGLR-----SLGPPEARSPGSVLPNRDLLRCIVSS 281

Query: 518 RVH 526
            VH
Sbjct: 282 IVH 284


>sp|Q8N5H7|SH2D3_HUMAN SH2 domain-containing protein 3C OS=Homo
           sapiens GN=SH2D3C PE=1 SV=1
          Length = 860

 Score = 34.3 bits (77), Expect = 0.61
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 305 ESAPRHWPRRMLGSQEPASNKTSYGIPDHKHKVTHKSPMDGSRASSSNTINVPEEKDPGD 484
           +  P   P   LG   P+ + +SY  PD  H    + P+ GSR  ++   +  + +  G+
Sbjct: 464 DKGPHTSPSHTLGKASPSPSLSSYSDPDSGHYCQLQPPVRGSREWAATETSSQQARSYGE 523

Query: 485 RLQ 493
           RL+
Sbjct: 524 RLK 526


>sp|Q8JZM4|DNER_MOUSE Delta and Notch-like epidermal growth
           factor-related receptor OS=Mus musculus GN=Dner PE=1
           SV=1
          Length = 737

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = -3

Query: 485 CLLGPFLQAH*WC*SLRPCFRPLGSCV*PCVCDQEYHMKSC---WRQVLGCPAFALANVE 315
           C L P   AH  C S+   ++        C+CD  YH   C   + + L  P    A   
Sbjct: 472 CALSPC--AHGMCRSVGTSYK--------CLCDPGYHGLYCEEEYNECLSAPCLNAATCR 521

Query: 314 EQTRPYRCVCL 282
           +    Y CVCL
Sbjct: 522 DLINGYECVCL 532


>sp|Q8NFT8|DNER_HUMAN Delta and Notch-like epidermal growth
           factor-related receptor OS=Homo sapiens GN=DNER PE=1
           SV=1
          Length = 737

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = -3

Query: 485 CLLGPFLQAH*WC*SLRPCFRPLGSCV*PCVCDQEYHMKSC---WRQVLGCPAFALANVE 315
           C L P   AH  C S+   ++        C+CD  YH   C   + + L  P    A   
Sbjct: 472 CALSPC--AHGTCRSVGTSYK--------CLCDPGYHGLYCEEEYNECLSAPCLNAATCR 521

Query: 314 EQTRPYRCVCL 282
           +    Y CVCL
Sbjct: 522 DLVNGYECVCL 532


>sp|Q60HH9|HEM2_MACFA Delta-aminolevulinic acid dehydratase
           OS=Macaca fascicularis GN=ALAD PE=2 SV=2
          Length = 330

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 569 LHTVGQCLMCHCLRNALSKMMNSLELATCLLGPFLQA 459
           +  + + LM H L N +S M  S + A+C  GPF  A
Sbjct: 175 VEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDA 211


>sp|P13716|HEM2_HUMAN Delta-aminolevulinic acid dehydratase OS=Homo
           sapiens GN=ALAD PE=1 SV=1
          Length = 330

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 569 LHTVGQCLMCHCLRNALSKMMNSLELATCLLGPFLQA 459
           +  + + LM H L N +S M  S + A+C  GPF  A
Sbjct: 175 VEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDA 211


>sp|Q8BH27|MEGF9_MOUSE Multiple epidermal growth factor-like domains
           9 OS=Mus musculus GN=Megf9 PE=2 SV=1
          Length = 600

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 566 HTVGQCLMCHCL-RNALSKMMNSLELATCLLG 474
           HTVG CL CHC    A+S + NS     C +G
Sbjct: 244 HTVGLCLPCHCSPHGAVSILCNSSGNCQCKVG 275


>sp|Q7Z2V1|TNT_HUMAN Protein TNT OS=Homo sapiens GN=C16orf82 PE=2
           SV=1
          Length = 217

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
 Frame = +2

Query: 323 WPRRMLGSQEPASNKTSY-----GIPDHKHKVTHKSPMDGSRASSSNTINVPEEKDPGDR 487
           WPR    +QEP    +SY         H   V H  P +GS AS S+     +E      
Sbjct: 106 WPRHAGVAQEPLKVSSSYLSDTQSSESHVSSVQHPRPEEGSHASLSSGYAGDKEGSDISL 165

Query: 488 LQAQDCSSSSR---VHCANNGTS---GIDPRYGVEKRLVPTGP 598
           + +      +R      A+N TS    IDP   ++ RL  TGP
Sbjct: 166 VGSHRRVRLNRRLNTQAASNQTSQLGSIDPPSSLKSRL--TGP 206


>sp|P0A5A5|PRIA_MYCTU Putative primosomal protein N'
           OS=Mycobacterium tuberculosis GN=priA PE=3 SV=1
          Length = 655

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 435 ALLPSIGLLCVTLCL*SGIPYEVLLEAGSWLPSIRLGQCR 316
           A LPSI L      L SG P  V +    ++PS+  G+CR
Sbjct: 333 ARLPSIALRAARSALQSGAPVLVQVPRRGYIPSLACGRCR 372


>sp|P0A5A6|PRIA_MYCBO Putative primosomal protein N'
           OS=Mycobacterium bovis GN=priA PE=3 SV=1
          Length = 655

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 435 ALLPSIGLLCVTLCL*SGIPYEVLLEAGSWLPSIRLGQCR 316
           A LPSI L      L SG P  V +    ++PS+  G+CR
Sbjct: 333 ARLPSIALRAARSALQSGAPVLVQVPRRGYIPSLACGRCR 372
tr_hit_id Q6NMF0
Definition tr|Q6NMF0|Q6NMF0_ARATH At1g73965 (CLE13 / CLAVATA3/ESR-Related 13) (CLE13) OS=Arabidopsis thaliana
Align length 25
Score (bit) 48.9
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956923|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_A06, 5'
         (664 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6NMF0|Q6NMF0_ARATH At1g73965 (CLE13 / CLAVATA3/ESR-Related 1...    49   3e-04
tr|A7P2H2|A7P2H2_VITVI Chromosome chr1 scaffold_5, whole genome ...    49   4e-04
tr|A7P323|A7P323_VITVI Chromosome chr1 scaffold_5, whole genome ...    48   5e-04
tr|A5B735|A5B735_VITVI Putative uncharacterized protein OS=Vitis...    48   5e-04
tr|Q9FZE4|Q9FZE4_ARATH T1K7.3 protein OS=Arabidopsis thaliana GN...    47   8e-04
tr|Q8LCX2|Q8LCX2_ARATH CLE gene family, putative OS=Arabidopsis ...    47   8e-04
tr|B6SLQ4|B6SLQ4_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.002
tr|Q4PSX1|Q4PSX1_ARATH Putative CLE10 OS=Arabidopsis thaliana GN...    45   0.003
tr|B6SHV0|B6SHV0_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.003
tr|Q6Z6T2|Q6Z6T2_ORYSJ Os02g0324400 protein OS=Oryza sativa subs...    45   0.004
tr|A2X462|A2X462_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.004
tr|Q8LBM7|Q8LBM7_ARATH Putative uncharacterized protein OS=Arabi...    45   0.005
tr|Q29PU4|Q29PU4_ARATH At1g68795 OS=Arabidopsis thaliana PE=4 SV=1     45   0.005
tr|A2Q4I8|A2Q4I8_MEDTR Putative uncharacterized protein OS=Medic...    44   0.007
tr|A8R3Q5|A8R3Q5_ORYSJ CLE family OsCLE508 protein OS=Oryza sati...    44   0.012
tr|A2Y6G0|A2Y6G0_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.012
tr|Q94DX8|Q94DX8_ORYSJ Putative uncharacterized protein P0403C05...    40   0.17 
tr|A2WVD4|A2WVD4_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.29 
tr|A9TQX7|A9TQX7_PHYPA Predicted protein OS=Physcomitrella paten...    37   1.4  
tr|Q9SN38|Q9SN38_ARATH Putative uncharacterized protein F28A21.1...    36   1.9  
tr|B3LV20|B3LV20_DROAN GF18013 OS=Drosophila ananassae GN=GF1801...    36   2.5  
tr|Q2GS89|Q2GS89_CHAGB Putative uncharacterized protein OS=Chaet...    36   2.5  
tr|Q55EJ1|Q55EJ1_DICDI UBP-type Zn finger-containing protein OS=...    35   3.2  
tr|B8B233|B8B233_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.2  
tr|B8AG44|B8AG44_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.2  
tr|A8R3M3|A8R3M3_ORYSJ CLE family OsCLE204 protein OS=Oryza sati...    35   4.2  
tr|A9RTF4|A9RTF4_PHYPA Predicted protein OS=Physcomitrella paten...    35   5.5  
tr|A8BE93|A8BE93_GIALA Putative uncharacterized protein OS=Giard...    35   5.5  
tr|A7P3N4|A7P3N4_VITVI Photosystem I P700 chlorophyll A apoprote...    34   7.1  
tr|A3B364|A3B364_ORYSJ Putative uncharacterized protein (CLE fam...    34   7.1  

>tr|Q6NMF0|Q6NMF0_ARATH At1g73965 (CLE13 / CLAVATA3/ESR-Related 13)
           (CLE13) OS=Arabidopsis thaliana GN=At1g73965 PE=4 SV=1
          Length = 107

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +2

Query: 539 GTSGIDPRYGVEKRLVPTGPNPLHN 613
           G S IDPRYGVEKRLVP+GPNPLH+
Sbjct: 83  GGSEIDPRYGVEKRLVPSGPNPLHH 107


>tr|A7P2H2|A7P2H2_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030055001
           PE=4 SV=1
          Length = 51

 Score = 48.5 bits (114), Expect = 4e-04
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +2

Query: 551 IDPRYGVEKRLVPTGPNPLHN 613
           IDPRYGVEKRLVP+GPNPLHN
Sbjct: 31  IDPRYGVEKRLVPSGPNPLHN 51


>tr|A7P323|A7P323_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030276001
           PE=4 SV=1
          Length = 81

 Score = 48.1 bits (113), Expect = 5e-04
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +2

Query: 551 IDPRYGVEKRLVPTGPNPLHN 613
           IDPRYGVEKRLVPTGPNPLH+
Sbjct: 61  IDPRYGVEKRLVPTGPNPLHH 81


>tr|A5B735|A5B735_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020013 PE=4 SV=1
          Length = 114

 Score = 48.1 bits (113), Expect = 5e-04
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +2

Query: 551 IDPRYGVEKRLVPTGPNPLHN 613
           IDPRYGVEKRLVPTGPNPLH+
Sbjct: 94  IDPRYGVEKRLVPTGPNPLHH 114


>tr|Q9FZE4|Q9FZE4_ARATH T1K7.3 protein OS=Arabidopsis thaliana
           GN=T1K7.3 PE=4 SV=1
          Length = 118

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +2

Query: 551 IDPRYGVEKRLVPTGPNPLHN 613
           IDPRYGV+KRLVP+GPNPLHN
Sbjct: 98  IDPRYGVDKRLVPSGPNPLHN 118


>tr|Q8LCX2|Q8LCX2_ARATH CLE gene family, putative OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 120

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +2

Query: 551 IDPRYGVEKRLVPTGPNPLHN 613
           IDPRYGV+KRLVP+GPNPLHN
Sbjct: 100 IDPRYGVDKRLVPSGPNPLHN 120


>tr|B6SLQ4|B6SLQ4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 132

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
 Frame = +2

Query: 314 PRHWP-----RRML---GSQEPASNKTSYGIPDHKHKVTHKSPMDGSRASSSNTINVPEE 469
           P  WP     R+ML    S + AS+ ++ G   H H + H      +    +    +P  
Sbjct: 42  PARWPAVVVPRKMLLAMTSFDAASSSSAAGHYHHHHHLHHHHHHHHADRRWNRHGTLPPS 101

Query: 470 KDPGDRLQAQDCSSSSRVHCANNGTSGIDPRYGVEKRLVPTGPNPLHN 613
              G+  +A                  IDPRYGV+KRLVP+GPNPLH+
Sbjct: 102 AAGGEGDEAM-----------------IDPRYGVQKRLVPSGPNPLHH 132


>tr|Q4PSX1|Q4PSX1_ARATH Putative CLE10 OS=Arabidopsis thaliana
           GN=At1g69320 PE=4 SV=1
          Length = 107

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +2

Query: 551 IDPRYGVEKRLVPTGPNPLHN 613
           ID RYGVEKRLVP+GPNPLHN
Sbjct: 87  IDQRYGVEKRLVPSGPNPLHN 107


>tr|B6SHV0|B6SHV0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 139

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = +2

Query: 551 IDPRYGVEKRLVPTGPNPLHN 613
           IDPRYGV+KRLVP+GPNPLH+
Sbjct: 119 IDPRYGVQKRLVPSGPNPLHH 139


>tr|Q6Z6T2|Q6Z6T2_ORYSJ Os02g0324400 protein OS=Oryza sativa subsp.
           japonica GN=P0688H12.37 PE=2 SV=1
          Length = 131

 Score = 45.1 bits (105), Expect = 0.004
 Identities = 17/21 (80%), Positives = 21/21 (100%)
 Frame = +2

Query: 551 IDPRYGVEKRLVPTGPNPLHN 613
           +DPR+GV+KRLVPTGPNPLH+
Sbjct: 111 VDPRFGVQKRLVPTGPNPLHH 131