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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956773
Clone id TST39A01NGRL0026_J21
Library
Length 660
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_J21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTCGCATGTGTCCTAGGGGCAAGGGTTGCTCCGGGAGGGGAGCACCCAATTGCCCCTCCC
CTCCCCTCCCCTCCCCTCCCCTTGGGTGCTTCAAATGACCTATTTTTTGTTGGCAGGGTT
GGCCGCTCCCCAGCTTCTTCATGAAGCTTAATCACTTTCCCAGTGAGGGTCTGCGTAAAG
ATCAATGGACTCTGATTGGCATGCAAGGCAAGCTGTGCTAGGCTTTGCCCTGCATGGTGG
CACCGAAGGTCTCTCCGTGGTGGGTTGAGATCCCCTTGCAGCTCGGGTTCCTTCTTCTTT
GGTCTTCTACTGCGCTGACGGTGCGTGGCTGGCCAAAAAAAGCCAGCAGATATTGGTGCT
CTGTTCGAGGTGATGGAGCAGGATGCTCCACCCTTATGCGGCTCTATTTAGGGAACTCAG
TTATTGTCCTGCTCCGGTTGTTTTGGTTTGGCTATGCTTCAGCTTTACGGGATCTTTGCT
CGGGTCAATGAATCTGTCTCTGGCATGAAAAGGTTCCTTGGGCCAAACCTTGCTCACTTT
CTTTTGGGTCGACCCTTTTTGTGCGGATATGGCCCTTTTCATGGCAGCCTTTTGGGAAGT
TTCCTTTCTTGGATTTTATGAAGGAAGGGGGCCCCGGGAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6DID5
Definition sp|Q6DID5|MUM1_MOUSE Mutated melanoma-associated antigen 1 OS=Mus musculus
Align length 77
Score (bit) 33.5
E-value 0.95
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956773|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_J21, 5'
         (638 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6DID5|MUM1_MOUSE Mutated melanoma-associated antigen 1 OS=Mu...    33   0.95 
sp|Q6A085|ZN629_MOUSE Zinc finger protein 629 OS=Mus musculus GN...    32   2.1  
sp|Q87R88|Y909_VIBPA UPF0061 protein VP0909 OS=Vibrio parahaemol...    31   6.2  
sp|Q5R7D0|COX18_PONAB Mitochondrial inner membrane protein COX18...    26   7.5  
sp|Q8N8Q8|COX18_HUMAN Mitochondrial inner membrane protein COX18...    26   7.5  

>sp|Q6DID5|MUM1_MOUSE Mutated melanoma-associated antigen 1 OS=Mus
           musculus GN=Mum1 PE=2 SV=1
          Length = 682

 Score = 33.5 bits (75), Expect = 0.95
 Identities = 24/77 (31%), Positives = 31/77 (40%)
 Frame = -1

Query: 458 SIAKPKQPEQDNN*VP*IEPHKGGASCSITSNRAPISAGFFWPATHRQRSRRPKKKEPEL 279
           ++A P+ P Q  +     EP  G   C         S+G   P +  +RSR    K P L
Sbjct: 248 ALASPRPPSQTRD----EEPCAGVKGCDWVK-----SSGNIRPLSASERSRGCPTKRPRL 298

Query: 278 QGDLNPPRRDLRCHHAG 228
            G  NPP R L     G
Sbjct: 299 DGGQNPPTRQLGTRTVG 315


>sp|Q6A085|ZN629_MOUSE Zinc finger protein 629 OS=Mus musculus
           GN=Znf629 PE=2 SV=2
          Length = 867

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
 Frame = -1

Query: 317 QRSRRPKKKEPELQGDLNPPRRDLRCHHAGQSLAQLAL-------HANQSPLIFTQTLTG 159
           Q S+ P+ +E   Q    P  +   C H G+S    A+       H N+ P +F +  TG
Sbjct: 638 QPSKVPESQEGSGQRPGQPSPKCYVCSHCGESFLDRAVLLQHQLTHGNEKPFLFPECRTG 697

Query: 158 KVIKLHEEAGERPTLPTKNRSFEAPK 81
           +     E AG  P L  K   F+ P+
Sbjct: 698 R----GEGAGPSPFLNAK--PFKCPE 717


>sp|Q87R88|Y909_VIBPA UPF0061 protein VP0909 OS=Vibrio
           parahaemolyticus GN=VP0909 PE=3 SV=1
          Length = 489

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 392 PYAALFRELSYCPAPVVLVWLCFSFTGSLLGSMNLSLA*KGSLGQT 529
           PYAA+F E+    A ++  W  + F   ++ + N+S+     LGQT
Sbjct: 218 PYAAMFGEIVQKTADMIAYWQAYGFAHGVMNTDNMSI-----LGQT 258


>sp|Q5R7D0|COX18_PONAB Mitochondrial inner membrane protein COX18
           OS=Pongo abelii GN=COX18 PE=2 SV=1
          Length = 334

 Score = 25.8 bits (55), Expect(2) = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 428 PAPVVLVWLCFSFTG 472
           P+ +VL WLC SF G
Sbjct: 276 PSSIVLYWLCSSFVG 290



 Score = 23.1 bits (48), Expect(2) = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 272 PLAARVPSSLVFY 310
           P+AA VPSS+V Y
Sbjct: 270 PIAATVPSSIVLY 282


>sp|Q8N8Q8|COX18_HUMAN Mitochondrial inner membrane protein COX18
           OS=Homo sapiens GN=COX18 PE=2 SV=1
          Length = 333

 Score = 25.8 bits (55), Expect(2) = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 428 PAPVVLVWLCFSFTG 472
           P+ +VL WLC SF G
Sbjct: 275 PSSIVLYWLCSSFVG 289



 Score = 23.1 bits (48), Expect(2) = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 272 PLAARVPSSLVFY 310
           P+AA VPSS+V Y
Sbjct: 269 PIAATVPSSIVLY 281
tr_hit_id A8PDU0
Definition tr|A8PDU0|A8PDU0_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 55
Score (bit) 37.4
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956773|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_J21, 5'
         (638 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8PDU0|A8PDU0_COPC7 Predicted protein OS=Coprinopsis cinerea ...    37   0.77 
tr|A9WEV7|A9WEV7_CHLAA Putative uncharacterized protein OS=Chlor...    37   1.0  
tr|B2QPD6|B2QPD6_9CHLR Putative uncharacterized protein OS=Chlor...    37   1.0  
tr|B6PFA3|B6PFA3_BRAFL Putative uncharacterized protein OS=Branc...    36   1.7  
tr|B6LDA5|B6LDA5_BRAFL Putative uncharacterized protein OS=Branc...    36   1.7  
tr|Q47HC7|Q47HC7_DECAR Putative uncharacterized protein OS=Dechl...    35   2.9  
tr|B0RJG6|B0RJG6_CLAMS Putative membrane protein OS=Clavibacter ...    35   2.9  
tr|Q4RF27|Q4RF27_TETNG Chromosome 14 SCAF15120, whole genome sho...    34   6.5  
tr|B4DUE5|B4DUE5_HUMAN cDNA FLJ58245, highly similar to Receptor...    34   6.5  
tr|O92810|O92810_MPMV Gag polyprotein OS=Mason-Pfizer monkey vir...    34   8.6  
tr|O56224|O56224_MPMV Gag polyprotein OS=Mason-Pfizer monkey vir...    34   8.6  
tr|Q2IEW6|Q2IEW6_ANADE Lipid A biosynthesis-like OS=Anaeromyxoba...    34   8.6  
tr|B4UAY3|B4UAY3_ANASK Lipid A biosynthesis domain protein OS=An...    34   8.6  
tr|B8J5H1|B8J5H1_9DELT Lipid A biosynthesis domain protein OS=An...    34   8.6  

>tr|A8PDU0|A8PDU0_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_10452 PE=4
           SV=1
          Length = 220

 Score = 37.4 bits (85), Expect = 0.77
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 111 WQGWPLPSFFMKLNHFPSEGLRKDQWTLIGMQGKLC*ALPCMVAPKVSPWWVEIP 275
           W+G  LP+ F++L    ++GL  D   +  + G L  +LP + +     WW+  P
Sbjct: 73  WRGLSLPAGFIRLIQATAQGLLDDDLVIEALAGDLAKSLPPISSDPPRAWWINFP 127


>tr|A9WEV7|A9WEV7_CHLAA Putative uncharacterized protein
           OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
           / J-10-fl) GN=Caur_0626 PE=4 SV=1
          Length = 411

 Score = 37.0 bits (84), Expect = 1.0
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 243 PKVSPWWVEIPLQLGFLLLWSSTALTVRGWPKKASRYWCSVRGDGAGCSTLMRLYLGNSV 422
           P +SP WV   + + F ++WS+ ALT+R W ++         GD    +T MR   G  V
Sbjct: 142 PWLSPLWVTARIAI-FFIIWSALALTLRAWSRQQ-----DAGGDAKKLATRMRRLSGIGV 195

Query: 423 ---IVLLRLFWFGYASAL 467
              ++ +  F F  A +L
Sbjct: 196 ALFVITVTFFSFDVAMSL 213


>tr|B2QPD6|B2QPD6_9CHLR Putative uncharacterized protein
           OS=Chloroflexus sp. Y-400-fl GN=Chy400DRAFT_2869 PE=4
           SV=1
          Length = 411

 Score = 37.0 bits (84), Expect = 1.0
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 243 PKVSPWWVEIPLQLGFLLLWSSTALTVRGWPKKASRYWCSVRGDGAGCSTLMRLYLGNSV 422
           P +SP WV   + + F ++WS+ ALT+R W ++         GD    +T MR   G  V
Sbjct: 142 PWLSPLWVTARIAI-FFIIWSALALTLRAWSRQQ-----DAGGDAKKLATRMRRLSGIGV 195

Query: 423 ---IVLLRLFWFGYASAL 467
              ++ +  F F  A +L
Sbjct: 196 ALFVITVTFFSFDVAMSL 213


>tr|B6PFA3|B6PFA3_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_106267 PE=4 SV=1
          Length = 2208

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -3

Query: 636  RGPLPS*NPRKETSQKAAMKRAISAQKGSTQKKVSKVWPKEPFHARDRFIDPSKDPVKLK 457
            +GPL   +P +E +Q ++ K+   +  GS QK   K  PKE   + +R + P K P+K  
Sbjct: 1322 KGPL---SPGQEANQPSSPKKRKLSAMGSPQKSSPKKRPKEERLSTERSLSPKKSPMKDV 1378

Query: 456  H 454
            H
Sbjct: 1379 H 1379


>tr|B6LDA5|B6LDA5_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_69184 PE=4 SV=1
          Length = 2207

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -3

Query: 636  RGPLPS*NPRKETSQKAAMKRAISAQKGSTQKKVSKVWPKEPFHARDRFIDPSKDPVKLK 457
            +GPL   +P +E +Q ++ K+   +  GS QK   K  PKE   + +R + P K P+K  
Sbjct: 1321 KGPL---SPGQEANQPSSPKKRKLSAMGSPQKSSPKKRPKEERLSTERSLSPKKSPMKDV 1377

Query: 456  H 454
            H
Sbjct: 1378 H 1378


>tr|Q47HC7|Q47HC7_DECAR Putative uncharacterized protein
           OS=Dechloromonas aromatica (strain RCB) GN=Daro_0998
           PE=4 SV=1
          Length = 432

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
 Frame = +3

Query: 117 GWPLPSFFMKLNHFPSEGLRKDQWTLIGMQGKLC*ALPCMVAP--KVSP-------WWVE 269
           GW LP         P+       W L G  G L  A+  +V P  +++P       WW  
Sbjct: 174 GWALP--------LPALADLHAGWGLGGWAGVLLAAMAYVVVPMFQLTPGYPMRASWWFP 225

Query: 270 IPLQLGFLLLWSSTALTVRGWPKKASRYWCSVRG 371
           + + LG LLLWS+  L    W  + S++  +V G
Sbjct: 226 VAM-LGMLLLWSAAVLADWPWLVRLSQFAAAVAG 258


>tr|B0RJG6|B0RJG6_CLAMS Putative membrane protein OS=Clavibacter
           michiganensis subsp. sepedonicus (strain ATCC 33113 /
           JCM 9667) GN=pCSL0114 PE=4 SV=1
          Length = 252

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
 Frame = +3

Query: 186 WTLIGMQGKLC*ALPCMV-----APKVSP--------WWVEIPLQLGFLLLWSSTALTVR 326
           WT   +Q   C A  C V     +P  SP        W V++P        W S+A    
Sbjct: 2   WTWFLVQAASCTAAACHVRVGPNSPGRSPPNPARSRMWVVQVPS-----FCWRSSATVTS 56

Query: 327 GWP--KKASRYWCSVRGDGA----GCSTLMRLYLGNSVIVLL 434
           GWP  ++ +R W  V G  A    GC T + + +G  V+++L
Sbjct: 57  GWPWWQRRTRAWRGVSGSRAAAYIGCRTGVVVAVGVVVVMVL 98


>tr|Q4RF27|Q4RF27_TETNG Chromosome 14 SCAF15120, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00035512001 PE=4 SV=1
          Length = 665

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 270 SQPTTERPSVPPCRAKPSTACLACQSESIDLYADPHWESD 151
           + P+  RP+VPP  AKPS A  A   E   L   P  E D
Sbjct: 598 TSPSLHRPAVPPVEAKPSPAAAAPHPEGTALGGRPRLEQD 637


>tr|B4DUE5|B4DUE5_HUMAN cDNA FLJ58245, highly similar to
           Receptor-type tyrosine-protein phosphatase epsilon (EC
           3.1.3.48) OS=Homo sapiens PE=2 SV=1
          Length = 669

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 22/68 (32%), Positives = 26/68 (38%)
 Frame = -3

Query: 390 WSILLHHLEQSTNICWLFLASHAPSAQ*KTKEEGTRAARGSQPTTERPSVPPCRAKPSTA 211
           WS  +H        CW  LA  +P     T+   T A R  +P   R   PP R  P   
Sbjct: 15  WSPCVHS-------CWWVLACRSPGLSGATRPLPT-ATRQPRPQALRTRAPPSRCWPGCY 66

Query: 210 CLACQSES 187
           C  C S S
Sbjct: 67  CRCCSSSS 74


>tr|O92810|O92810_MPMV Gag polyprotein OS=Mason-Pfizer monkey virus
           GN=gag-pro PE=4 SV=2
          Length = 911

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 29/83 (34%), Positives = 34/83 (40%)
 Frame = -2

Query: 610 KKGNFPKGCHEKGHIRTKRVDPKESEQGLAQGTFSCQRQIH*PEQRSRKAEA*PNQNNRS 431
           KKG+F K CHE  H      +PK    GL      C+R  H   +   K +   NQ N  
Sbjct: 554 KKGHFAKNCHEHAH---NNAEPK--VPGLCP---RCKRGKHWANECKSKTD---NQGN-- 600

Query: 430 RTITEFPK*SRIRVEHPAPSPRT 362
                 P     RVE PAP P T
Sbjct: 601 ----PIPPHQGNRVEGPAPGPET 619