DK956709
Clone id TST39A01NGRL0026_H05
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_H05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCTAGAATGGGATAATTCAGAAGTGTGATTTGCTGGATCAGCAGAGCAGGTGATTGTTGC
AGCGATGGCGGCAGTAGCAGCAAACATGACTTCTGCTAGAATGTATGCAGAGGGATTAGC
TTCAACGAGCTGCCCGGTGGCAGTGTTTGCAAGGGGCGCATCAGGGGTTTCTCCGCGTAG
TTGGGTGCAAACAAGCAGGCGGTCCCTCCGGGTGGTTTGCCACAGCGATCCTGCTGGAGG
TTGTTGTGGCGGAAGCGGTAGCGGTAGCAGTAGCAGTAGTGAAAGTGGCTCTAGCTGCAG
CAGCCATGGAAAGAATAGCTTATCTAATCTTGGCAAGGAGTTTGAGCACCTCGTCGCCAC
GAACACATTGCTTGAATTTGAGAAGGAATATGTGGCGGCACCGATGGAAGGCAAGATCAC
AAGGGACATCATGGAAACAGTGATGCATGCAGGCCCCGATGAAAATACTTCTGGCAAAGA
GACATTTCTTGACATCAATGAGATACTAAAGGGATGCGACGAACATGAGCGAAGGCGATT
TTCATCTTTTCTGAG
■■Homology search results ■■ -
sp_hit_id Q0V9A3
Definition sp|Q0V9A3|SPT2_XENTR Protein SPT2 homolog OS=Xenopus tropicalis
Align length 30
Score (bit) 30.0
E-value 8.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956709|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_H05, 5'
(555 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0V9A3|SPT2_XENTR Protein SPT2 homolog OS=Xenopus tropicalis ... 30 8.0

>sp|Q0V9A3|SPT2_XENTR Protein SPT2 homolog OS=Xenopus tropicalis
GN=spty2d1 PE=2 SV=1
Length = 778

Score = 30.0 bits (66), Expect = 8.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1

Query: 174 GETPDAPLANTATGQLVEANPSAYILAEVM 85
G P P+A +ATGQL A P ++AE +
Sbjct: 604 GSGPGRPVAASATGQLAPAKPKCTVVAETI 633


tr_hit_id A9NMZ4
Definition tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 73
Score (bit) 57.4
E-value 5.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956709|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_H05, 5'
(555 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea... 57 5e-07
tr|A9TG33|A9TG33_PHYPA Predicted protein OS=Physcomitrella paten... 50 8e-05
tr|B6G1R7|B6G1R7_9CLOT Putative uncharacterized protein OS=Clost... 35 2.0
tr|A7NSW2|A7NSW2_VITVI Chromosome chr18 scaffold_1, whole genome... 34 4.6
tr|A5C7C8|A5C7C8_VITVI Putative uncharacterized protein OS=Vitis... 34 4.6
tr|Q9UD04|Q9UD04_HUMAN GHDTA=GROWTH hormone gene-derived transcr... 34 4.6

>tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 164

Score = 57.4 bits (137), Expect = 5e-07
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Frame = +2

Query: 305 HGKNS---LSNLGKEFEHLVATNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPDE-NTS 472
HGK+S LS +GKEFE +VA TL E EKEY M+G ITRD + VM+ GP
Sbjct: 74 HGKSSVPDLSKIGKEFETMVARATLSEREKEYNTVEMKGNITRDDFKEVMNIGPSRFAEE 133

Query: 473 GK-ETFLDINEIL 508
GK ET +D+ +L
Sbjct: 134 GKGETVIDLQAML 146


>tr|A9TG33|A9TG33_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_169878 PE=4 SV=1
Length = 575

Score = 50.1 bits (118), Expect = 8e-05
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +2

Query: 320 LSNLGKEFEHLVATNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPD 460
++N+G EFE++V+ T+ EFEKEY M+G ITRD++ VM+ P+
Sbjct: 91 IANVGAEFENMVSRATMEEFEKEYDTGEMQGTITRDVVAEVMNEMPE 137


>tr|B6G1R7|B6G1R7_9CLOT Putative uncharacterized protein
OS=Clostridium hiranonis DSM 13275 GN=CLOHIR_02075 PE=4
SV=1
Length = 410

Score = 35.4 bits (80), Expect = 2.0
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Frame = +2

Query: 314 NSLSNLGKEF--------EHLVATNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPDENT 469
N+LSN+ +E + + N ++ F +Y+ E +T H P+
Sbjct: 333 NNLSNVQREISGNYIYSIDSVSEPNRVISFSIDYIDEDEENHVT-------FHVSPEYYN 385

Query: 470 SGKETFLDINEILKGCDEHE 529
K+TFLDI E++K HE
Sbjct: 386 RNKDTFLDIFEVMKKSFNHE 405


>tr|A7NSW2|A7NSW2_VITVI Chromosome chr18 scaffold_1, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00014429001
PE=4 SV=1
Length = 309

Score = 34.3 bits (77), Expect = 4.6
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2

Query: 359 TNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPDENTSGKETFLDINEILKGCDEHERRR 538
+N LL+ E Y+ K+T ++ +V H+ ++ KE FL + ++LK CDE ++
Sbjct: 174 SNELLDVESNYL------KVTSEVPHSV-HSKETDDQQRKERFLRLQKVLKQCDEFDQND 226

Query: 539 F 541
+
Sbjct: 227 Y 227


>tr|A5C7C8|A5C7C8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_030645 PE=4 SV=1
Length = 511

Score = 34.3 bits (77), Expect = 4.6
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2

Query: 359 TNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPDENTSGKETFLDINEILKGCDEHERRR 538
+N LL+ E Y+ K+T ++ +V H+ ++ KE FL + ++LK CDE ++
Sbjct: 241 SNELLDVESNYL------KVTSEVPHSV-HSKETDDQQRKERFLRLQKVLKQCDEFDQND 293

Query: 539 F 541
+
Sbjct: 294 Y 294


>tr|Q9UD04|Q9UD04_HUMAN GHDTA=GROWTH hormone gene-derived
transcriptional activator/hepatic nuclear factor-1 alpha
homolog OS=Homo sapiens PE=4 SV=1
Length = 107

Score = 34.3 bits (77), Expect = 4.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3

Query: 339 SLSTSSPRTHCLNLRRNMWRHRWKARSQG 425
S+STS C+N+ RN W +W+ R QG
Sbjct: 13 SISTSPSVAPCINVHRNRWGQQWERRGQG 41