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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956608
Clone id TST39A01NGRL0026_C24
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_C24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CGCCTTCTCAGTGATGACGAACATCAGATGACGAGACTGACTATTTCGTGATGTCAAACG
AGGCATTTGTCTGAGAGAAGTAATGTCGCTACTACAGGCAGTCTAAGGTCGCCAGTAGGG
GACAGGCGATGGCCAGGTACTTACTATTTCTCTTTCGTTGACGTGTTCCCTTTGCTCGGA
TGATGATGAACATGCCAAAAGTTATTCTCACGACGGTCGTCCGAGCTTTTTCGGCTATGG
AGATTTGGTCTCCTGTCTGACGGGCAGCATTTTTTTGTATGTTTTCCGCTCGATTCAAGC
ATCAGTGAATCTGCATGTCTGCCATGTGCATACGTAGTTTGCTTGTTTGTTTTCAAGCTG
CACGGCCCTTAAGAGCGCCTCTAGTTTGGCTGGCTTCTGTCAGCTGCGTAGTGATGGAGG
TTTTCGAGTCATTGCTGTGCTAGATTAAATTCAGGGGAAGAGAAGGGCCTTCCTTTTCAT
CCTTGTCGTCTCTTCCTTTTGTTGGATCAGCTTCTGTTTGACCTAACAGGGAGGGTGTCT
GACATTTTTGTCTGAGGAATCCATGAGTTTTACTTCATCATCTGAGAGGGAGGGTGCTTG
ACCACCTTGATGTTGAACGGATC
■■Homology search results ■■ -
sp_hit_id A1JNX9
Definition sp|A1JNX9|Y3204_YERE8 UPF0255 protein YE3204 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
Align length 46
Score (bit) 31.6
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956608|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_C24, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1JNX9|Y3204_YERE8 UPF0255 protein YE3204 OS=Yersinia enteroc...    32   3.4  
sp|Q66DZ1|Y902_YERPS UPF0255 protein YPTB0902 OS=Yersinia pseudo...    31   5.9  
sp|Q1CLC9|Y869_YERPN UPF0255 protein YPN_0869 OS=Yersinia pestis...    31   5.9  
sp|Q8D170|Y3224_YERPE UPF0255 protein YPO3224/y0964/YP_0709 OS=Y...    31   5.9  
sp|A7FLI4|Y3152_YERP3 UPF0255 protein YpsIP31758_3152 OS=Yersini...    31   5.9  
sp|A4TPK3|Y2853_YERPP UPF0255 protein YPDSF_2853 OS=Yersinia pes...    31   5.9  
sp|Q1C4E4|Y2716_YERPA UPF0255 protein YPA_2716 OS=Yersinia pesti...    31   5.9  
sp|P54233|NIA1_SOYBN Inducible nitrate reductase [NADH] 1 OS=Gly...    31   5.9  
sp|Q8BKA3|K1853_MOUSE Uncharacterized protein KIAA1853 homolog O...    31   5.9  
sp|A7MD48|K1853_HUMAN Uncharacterized protein KIAA1853 OS=Homo s...    30   7.7  

>sp|A1JNX9|Y3204_YERE8 UPF0255 protein YE3204 OS=Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
           GN=YE3204 PE=3 SV=1
          Length = 415

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -2

Query: 571 KTHGFLRQKCQTPSLLGQTEADPTKGRDD-----KDEKEGPSLPLN 449
           KT G L ++CQTP L G  E DP   +++         +G  LP++
Sbjct: 346 KTQGLLGRRCQTPMLAGFWENDPFSPKEEAKLICSSSADGKLLPIS 391


>sp|Q66DZ1|Y902_YERPS UPF0255 protein YPTB0902 OS=Yersinia
           pseudotuberculosis GN=YPTB0902 PE=3 SV=1
          Length = 415

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 571 KTHGFLRQKCQTPSLLGQTEADPTKGRDD 485
           KT G L ++CQTP L G  E DP   +++
Sbjct: 346 KTQGLLGRRCQTPMLAGFWENDPFSPKEE 374


>sp|Q1CLC9|Y869_YERPN UPF0255 protein YPN_0869 OS=Yersinia pestis
           bv. Antiqua (strain Nepal516) GN=YPN_0869 PE=3 SV=1
          Length = 415

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 571 KTHGFLRQKCQTPSLLGQTEADPTKGRDD 485
           KT G L ++CQTP L G  E DP   +++
Sbjct: 346 KTQGLLGRRCQTPMLAGFWENDPFSPKEE 374


>sp|Q8D170|Y3224_YERPE UPF0255 protein YPO3224/y0964/YP_0709
           OS=Yersinia pestis GN=YPO3224 PE=3 SV=2
          Length = 415

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 571 KTHGFLRQKCQTPSLLGQTEADPTKGRDD 485
           KT G L ++CQTP L G  E DP   +++
Sbjct: 346 KTQGLLGRRCQTPMLAGFWENDPFSPKEE 374


>sp|A7FLI4|Y3152_YERP3 UPF0255 protein YpsIP31758_3152 OS=Yersinia
           pseudotuberculosis serotype O:1b (strain IP 31758)
           GN=YpsIP31758_3152 PE=3 SV=1
          Length = 415

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 571 KTHGFLRQKCQTPSLLGQTEADPTKGRDD 485
           KT G L ++CQTP L G  E DP   +++
Sbjct: 346 KTQGLLGRRCQTPMLAGFWENDPFSPKEE 374


>sp|A4TPK3|Y2853_YERPP UPF0255 protein YPDSF_2853 OS=Yersinia pestis
           (strain Pestoides F) GN=YPDSF_2853 PE=3 SV=1
          Length = 415

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 571 KTHGFLRQKCQTPSLLGQTEADPTKGRDD 485
           KT G L ++CQTP L G  E DP   +++
Sbjct: 346 KTQGLLGRRCQTPMLAGFWENDPFSPKEE 374


>sp|Q1C4E4|Y2716_YERPA UPF0255 protein YPA_2716 OS=Yersinia pestis
           bv. Antiqua (strain Antiqua) GN=YPA_2716 PE=3 SV=1
          Length = 415

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 571 KTHGFLRQKCQTPSLLGQTEADPTKGRDD 485
           KT G L ++CQTP L G  E DP   +++
Sbjct: 346 KTQGLLGRRCQTPMLAGFWENDPFSPKEE 374


>sp|P54233|NIA1_SOYBN Inducible nitrate reductase [NADH] 1
           OS=Glycine max GN=INR1 PE=2 SV=1
          Length = 886

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
 Frame = +1

Query: 199 KLFSRRS-SELFRLWRFGLLSD--------GQHFFVCFPLDSSISESACLPCAYV 336
           KL S+ S S   RL+RFGL SD        G+H F+C  +D  +   A  P + V
Sbjct: 636 KLISKTSISHDVRLFRFGLPSDGLLMGLAVGKHIFLCVTVDEKLCMRAYTPTSSV 690


>sp|Q8BKA3|K1853_MOUSE Uncharacterized protein KIAA1853 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 608

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 165 HVNEREIVSTWPSPVPYWRP*TACSSDITSLRQMPRLTSRNSQS 34
           H+  R I S    P+PY+RP  + SS ++S       +S +S S
Sbjct: 499 HLEARRITSARKRPIPYYRPSPSSSSSLSSASSWYSSSSSSSSS 542


>sp|A7MD48|K1853_HUMAN Uncharacterized protein KIAA1853 OS=Homo
           sapiens GN=KIAA1853 PE=2 SV=1
          Length = 611

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 165 HVNEREIVSTWPSPVPYWRP*TACSSDITSLRQMPRLTSRNSQSR 31
           H+  R I S    P+PY+RP  + S  ++S       +S  S SR
Sbjct: 503 HLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASR 547
tr_hit_id B4L533
Definition tr|B4L533|B4L533_DROMO GI21653 OS=Drosophila mojavensis
Align length 76
Score (bit) 36.2
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956608|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_C24, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4L533|B4L533_DROMO GI21653 OS=Drosophila mojavensis GN=GI216...    36   1.6  
tr|B4QWG1|B4QWG1_DROSI GD20273 OS=Drosophila simulans GN=GD20273...    35   4.7  
tr|Q4RTW5|Q4RTW5_TETNG Chromosome 12 SCAF14996, whole genome sho...    34   8.0  
tr|B4IBS0|B4IBS0_DROSE GM15415 OS=Drosophila sechellia GN=GM1541...    34   8.0  

>tr|B4L533|B4L533_DROMO GI21653 OS=Drosophila mojavensis GN=GI21653
           PE=4 SV=1
          Length = 1043

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -1

Query: 368 GPCSLKTNKQTTYAHGRHADSLMLESSGKH--TKKCCPSDRRPNLHSRKSSDDRRENNFW 195
           G C +++N  TT  H  H  S    SSGKH  + K    DR  +   + SS   RE    
Sbjct: 17  GSCEVQSNGVTTNGHHHHHQSSSSSSSGKHKSSSKDKHRDRERSSEHKSSSSSSRE---- 72

Query: 194 HVHHHPSKGNTSTKEK 147
             H   S  ++S+++K
Sbjct: 73  --HKSGSSSSSSSRDK 86


>tr|B4QWG1|B4QWG1_DROSI GD20273 OS=Drosophila simulans GN=GD20273
           PE=4 SV=1
          Length = 534

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -1

Query: 359 SLKTNKQTTYAHGRHADSLMLESSGKHTKKCCPSDRRPNLHSRKSSDDRRENNFWHVHHH 180
           S +++  + Y   +H      + S KH+KK     R+ +  S   SDD  + N      H
Sbjct: 452 STESDSDSAYERRKHKKKSSSQKSRKHSKKSKNKSRKVDHDSSSESDDSLDENH---RRH 508

Query: 179 PSKGNTSTK 153
           PSK    TK
Sbjct: 509 PSKHKKKTK 517


>tr|Q4RTW5|Q4RTW5_TETNG Chromosome 12 SCAF14996, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00029062001 PE=4 SV=1
          Length = 732

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = -3

Query: 318 TCRFTDA*IERKTYKKMLPVRQETKSP*PKKLGRPXXXXXXXXXXXXEQREHVNEREIVS 139
           T R TD    RKT K+    R+++ SP  K+                +   H+  R I S
Sbjct: 612 TSRETDVKRSRKTRKRR---RRKSYSPLKKR--------------RRDSPSHLEARRITS 654

Query: 138 TWPSPVPYWRP*TACSSDITSLRQMPRLTSRN-SQSR 31
               P+PY+RP  + SS   S+     + SRN S+SR
Sbjct: 655 ARKRPIPYFRPSPSSSSHSASISSWSSIFSRNRSRSR 691


>tr|B4IBS0|B4IBS0_DROSE GM15415 OS=Drosophila sechellia GN=GM15415
           PE=4 SV=1
          Length = 546

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -1

Query: 359 SLKTNKQTTYAHGRHADSLMLESSGKHTKKCCPSDRRPNLHSRKSSDDRRENNFWHVHHH 180
           S +++  + Y   +H        S KH+KK     R+ +  S   SDD  + N      H
Sbjct: 464 STESDSDSAYERRKHKKKSSSHKSRKHSKKSKNKSRKVDHDSSSESDDSLDENH---RRH 520

Query: 179 PSKGNTSTK 153
           PSK    TK
Sbjct: 521 PSKHKKKTK 529