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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956396
Clone id TST39A01NGRL0025_K03
Library
Length 660
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_K03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAGGCGCAATGGGGAAGTGCCTTCGTCTTCACCCACCTTAAGGATATGACGAGGAATGAG
CTTCAGCCTTGACCCCATTTCCTCATTCTGTGAAAGGGGTCGCTTTATCATTTTAGTTTC
TGTACCTTCCTCGCTTTCCTTTATCTCCGTCCCTCTTCTGCTCTCCTCGAGTCCTCCCTC
TCCTTTCATTGCTTTCCTTACAGCACAACTCTCCGGCCCTTGTGATTTTTTTGCTTTTCT
GCTTTTTTTCCTGCGCACGCTTACATCCCGGGCCAGTTTTCTTCATCTCGGTACTCTGCA
TTTGCCTATTTCTGCATCTGGGTCCCCTCCATTTCTTGGCCCATTTTTGGAGCTTCTTCC
TTTACACCATATCCGCTCTTTTCATGTGGCCTTTATTCACCTCTCTGCTGTTTGCTTTTT
CATCCTCTGCTCTACTATCGTAGGAGCACTACATTGCGATCATCGCTCCTACGCTTTCCA
TTTCCCTATCAGATCTTGCATTAGCAGACTAGCTCGATCTGGAGTAGAGACTTACGACCA
CACAAAAGAGTTTTGACAAGACCTCTATGTTGTGAGATCTCACACAAACCGCTGAATGCT
TAGATATTTGAAGATCACTTTTGTACATTGCTCGCCTCCATAGATCTGCAGGGTTTTCAA
■■Homology search results ■■ -
sp_hit_id Q869E1
Definition sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum
Align length 73
Score (bit) 25.8
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956396|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_K03, 5'
         (660 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum G...    26   5.0  
sp|Q8IFN0|YD115_PLAF7 Uncharacterized protein PFD1115c OS=Plasmo...    30   8.6  
sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1 OS=Homo sapiens GN...    30   8.6  

>sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum
           GN=lig1 PE=3 SV=1
          Length = 1192

 Score = 25.8 bits (55), Expect(2) = 5.0
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = -2

Query: 413 KQQRGE*RPHEKSGYGVKEEAPKMGQEMEGTQMQK*ANAEYRD-----EENWPGM*ACAG 249
           K+++ E +P  KS    KEE  +  QE +  + ++    EY+      EE+  G      
Sbjct: 51  KKEKKETKPKRKSSKKNKEEEEEEEQEEQDGEEEQEEEEEYQQQDEEIEEDINGEEEMEL 110

Query: 248 KKAEKQKNHKGRR 210
            + EK+KN K ++
Sbjct: 111 DENEKEKNKKKKQ 123



 Score = 23.9 bits (50), Expect(2) = 5.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 168 EESRRGTEIKESEEGTETKMIKRPLSQNEEMGSRLKLIPRHILKVGEDE 22
           +ES+  +  K++ E  ET   K+P  Q+ +  + LK + R   K+ +DE
Sbjct: 131 KESKSSSSSKKTIENKET---KKPEKQSSKQSNNLKRLKRK--KMDDDE 174


>sp|Q8IFN0|YD115_PLAF7 Uncharacterized protein PFD1115c
           OS=Plasmodium falciparum (isolate 3D7) GN=PFD1115c PE=2
           SV=1
          Length = 1612

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 207 NSPALVIFLLFCFFSCARLHPGPVFFISVL-CICLFLHLGPLHFLAHFWSFF 359
           +S  L+ F++     C  L P  V  I+ +  +C F H+ P+H+++HF  FF
Sbjct: 472 SSKLLLRFIVTLSEICLILTPHYVNIINFIEILCDFGHIIPIHYISHFIHFF 523


>sp|Q8NGX0|O11L1_HUMAN Olfactory receptor 11L1 OS=Homo sapiens
           GN=OR11L1 PE=2 SV=1
          Length = 322

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 249 SCARLHPGPVFF----ISVLCICLFLHLGPLHFL 338
           SC+R++   V      I+VLCIC FL LGP  F+
Sbjct: 188 SCSRVYITEVTIFILSIAVLCICFFLTLGPYVFI 221
tr_hit_id Q85J99
Definition tr|Q85J99|Q85J99_9TREM NADH dehydrogenase subunit 2 OS=Paragonimus ohirai
Align length 58
Score (bit) 36.2
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956396|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_K03, 5'
         (660 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q85J99|Q85J99_9TREM NADH dehydrogenase subunit 2 OS=Paragonim...    36   1.8  
tr|Q8M676|Q8M676_9TREM NADH dehydrogenase subunit 2 OS=Paragonim...    35   5.3  
tr|Q8HN33|Q8HN33_9TREM NADH dehydrogenase subunit 2 OS=Paragonim...    35   5.3  
tr|Q9FGN1|Q9FGN1_ARATH Similarity to wax synthase (Long-chain-al...    34   7.0  
tr|A5B6A2|A5B6A2_VITVI Putative uncharacterized protein OS=Vitis...    34   9.1  

>tr|Q85J99|Q85J99_9TREM NADH dehydrogenase subunit 2 OS=Paragonimus
           ohirai GN=nad2 PE=4 SV=1
          Length = 288

 Score = 36.2 bits (82), Expect = 1.8
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +3

Query: 228 FLLFCFFSCARLHPGPVFFISVLCICLFLHLGPLHFL-----AHFWSFFLYTISALFM 386
           FL  CFF C+    G  FF+SV C+  FL LG L +       H W   + + SA+ +
Sbjct: 124 FLFMCFFLCS----GGSFFLSVSCLFSFLFLGGLFWCYSYSWCHCWCHMMLSSSAVLV 177


>tr|Q8M676|Q8M676_9TREM NADH dehydrogenase subunit 2 OS=Paragonimus
           westermani GN=ND2 PE=4 SV=1
          Length = 288

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +3

Query: 228 FLLFCFFSCARLHPGPVFFISVLCICLFLHLGPLHFL-----AHFWSFFLYTISA 377
           FL  CFF    L  G  FF++V+C+  FL LG L +       H W   + + SA
Sbjct: 124 FLFICFF----LSSGGAFFLNVVCVLSFLFLGGLFWCYSYSWCHCWCHMMLSSSA 174


>tr|Q8HN33|Q8HN33_9TREM NADH dehydrogenase subunit 2 OS=Paragonimus
           westermani GN=ND2 PE=4 SV=1
          Length = 288

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +3

Query: 228 FLLFCFFSCARLHPGPVFFISVLCICLFLHLGPLHFL-----AHFWSFFLYTISA 377
           FL  CFF    L  G  FF++V+C+  FL LG L +       H W   + + SA
Sbjct: 124 FLFICFF----LSSGGAFFLNVVCVLSFLFLGGLFWCYSYSWCHCWCHMMLSSSA 174


>tr|Q9FGN1|Q9FGN1_ARATH Similarity to wax synthase
           (Long-chain-alcohol O-fatty-acyltransferase family
           protein / wax synthase family protein) OS=Arabidopsis
           thaliana GN=At5g51420 PE=2 SV=1
          Length = 435

 Score = 34.3 bits (77), Expect = 7.0
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +3

Query: 210 SPALVIFLLFCFFSCARLHPGPVFFISVLCICLFLHLGPLHFLAHFWSFFLYTISALFM 386
           S +++I + +C++   R+ PG   F+SVL IC    + PL F     S  L   +ALF+
Sbjct: 12  SVSVIISISYCYYVPTRIKPGIFRFLSVLPICALFRVLPLFFA----SVHLSGYTALFI 66


>tr|A5B6A2|A5B6A2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002785 PE=4 SV=1
          Length = 1184

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
 Frame = +3

Query: 204 HNSPALVIFLLFCFFS---------CARLHPGPVFFISVLCICLFLHLGPLHFLAHFWSF 356
           H+SP L +FL    +S         C   H     FI V+ + LFL L P H L HF S 
Sbjct: 695 HSSPPLSLFLFLKSYSFLLSSHLMQCLLAH---FMFIIVVIMSLFLLLWPRHLLTHFLSL 751

Query: 357 FL 362
           +L
Sbjct: 752 WL 753