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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956296
Clone id TST39A01NGRL0025_F23
Library
Length 622
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_F23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTGAGCTGGATATGTTTTGTGTGAGGACAGGCGATGGATGCGCTGCCATTGCACGCTTC
CTGCTACTATGGACGCTATCAGGGCTTGGGTGGCACCGTGTACCCGAGCGTCTCGTTGAA
GGTGAGCCACCATTGCGGGCAGGTTTGCCGAAGGAGATTCTCCTCGAATGTTGTGTACGC
TTTCTCGGACCCGAGCAAGAGCAAAGGAGGCGAGCAGGGGCAGCATACACAACGTACACG
CACTTCATCCCTAGGGGAGCAGAGAGAAGAGCGTAAGAAGCCCTTTCGTCTCAAAGGACG
ATGGCGCCTTGCTGCTCGCCGCTTGCGGCGGCTCTCTCCCTCCTCTGTCCTCCGCAGTAT
ACTTGCGTATGCACGCACACACTCCAAGCAGGCAGCACTTTCCACCCTCCTTGGCTGTAC
GCTTGCCATGGGCTGCCTTTGCCTCAAGCTCACTACCGTGCCCACCCCACATTTTGTACC
TTACTCCGAGCTTGTGAATCATCTCAGAGCTGGCTCTGTTATGTCAGCTCTATTCGAAGA
AGGGTCCCGACGATTGTTTTTTGATTTGAAACCAATTGAAGGTGAGGCTGCTTCAGCCCG
TGAAGTTCTTGCTGTGGCTAAC
■■Homology search results ■■ -
sp_hit_id Q8B119
Definition sp|Q8B119|GLYC_PIRVV Pre-glycoprotein polyprotein GP complex OS=Pirital virus (isolate Rat/Venezuela/VAV-488/1995)
Align length 50
Score (bit) 32.0
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956296|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_F23, 5'
         (622 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8B119|GLYC_PIRVV Pre-glycoprotein polyprotein GP complex OS=...    32   2.6  
sp|P38056|ALR_MYCLE Alanine racemase OS=Mycobacterium leprae GN=...    31   4.5  
sp|Q5I0L3|SYYM_RAT Tyrosyl-tRNA synthetase, mitochondrial OS=Rat...    31   5.9  
sp|Q3IY22|RLMN_RHOS4 Ribosomal RNA large subunit methyltransfera...    31   5.9  
sp|A3PFQ4|RLMN_RHOS1 Ribosomal RNA large subunit methyltransfera...    31   5.9  
sp|Q8IYT8|ULK2_HUMAN Serine/threonine-protein kinase ULK2 OS=Hom...    31   5.9  
sp|A1KV48|SERC_NEIMF Phosphoserine aminotransferase OS=Neisseria...    30   7.7  
sp|O34370|SERC_NEIMA Phosphoserine aminotransferase OS=Neisseria...    30   7.7  
sp|Q811L6|MAST4_MOUSE Microtubule-associated serine/threonine-pr...    30   7.7  

>sp|Q8B119|GLYC_PIRVV Pre-glycoprotein polyprotein GP complex
           OS=Pirital virus (isolate Rat/Venezuela/VAV-488/1995)
           GN=GPC PE=3 SV=1
          Length = 510

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 116 LKVSHHCGQVCRRRFSSNVVYAFSDPSKSKGGEQGQHTQRTRTSSLGEQR 265
           L V+ H G +CR    + ++  ++  +  KGGE G+H   +    +G+ +
Sbjct: 159 LHVTRHIGALCRTTAGAGLLIQYNLTTSDKGGEVGRHLIASLAQIIGDNK 208


>sp|P38056|ALR_MYCLE Alanine racemase OS=Mycobacterium leprae GN=alr
           PE=3 SV=1
          Length = 388

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 175 HNIRGESPSANLPAMVAHLQRDARVHGATQALIASIVAGSVQ 50
           +N+R     A +  ++  L+ DA  HGATQ  +A++ AG+ +
Sbjct: 25  YNVRVLREHAGMAQLMVVLKADAYGHGATQVALAALAAGAAE 66


>sp|Q5I0L3|SYYM_RAT Tyrosyl-tRNA synthetase, mitochondrial OS=Rattus
           norvegicus GN=Yars2 PE=2 SV=1
          Length = 471

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
 Frame = +1

Query: 43  AAIARFLLLWTLSGLGWHRVPERLVEGE-----PPLRAGLPKEILLECCVRFLGPEQEQR 207
           A + R L     SG+ W R P  +  G       P   GL KE   E   +   PE   R
Sbjct: 3   APMLRHLCRVPQSGV-WTRGPRAVRPGARGMLVAPRARGLFKEFFPESGTKTELPELFDR 61

Query: 208 RRAGAAYTTYTHFIPRG 258
           RRAG+  T Y  F P G
Sbjct: 62  RRAGSPQTVYCGFDPTG 78


>sp|Q3IY22|RLMN_RHOS4 Ribosomal RNA large subunit methyltransferase
           N OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1
           / NCIB 8253 / DSM 158) GN=rlmN PE=3 SV=1
          Length = 392

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 100 VPERLVEGEPPLRAGLPKEILLECCVRFLGPEQEQRRRAGAAYTTYTHF 246
           +P +L EG P    GL +E LL   V    PE++ + RAG  +    H+
Sbjct: 14  LPRKLPEGGPVNIVGLTREELLAALVAAGTPERQAKMRAGQVWQWVYHW 62


>sp|A3PFQ4|RLMN_RHOS1 Ribosomal RNA large subunit methyltransferase
           N OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
           2.4.9) GN=rlmN PE=3 SV=1
          Length = 392

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 100 VPERLVEGEPPLRAGLPKEILLECCVRFLGPEQEQRRRAGAAYTTYTHF 246
           +P +L EG P    GL +E LL   V    PE++ + RAG  +    H+
Sbjct: 14  LPRKLPEGGPVNIVGLTREELLAALVAAGTPERQAKMRAGQVWQWVYHW 62


>sp|Q8IYT8|ULK2_HUMAN Serine/threonine-protein kinase ULK2 OS=Homo
           sapiens GN=ULK2 PE=2 SV=1
          Length = 1036

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 203 CSCSGPRKRTQHSRRISFGKPARNGGSPSTRRSGTRCHPSP--DSVHSSRKRAMAAHPSP 30
           C C  P+     SR  S G P     SP +  SG R   +P    ++ ++++    H  P
Sbjct: 491 CCCGHPQGHDSRSRNSS-GSPVPQAQSPQSLLSGARLQSAPTLTDIYQNKQKLRKQHSDP 549

Query: 29  V 27
           V
Sbjct: 550 V 550


>sp|A1KV48|SERC_NEIMF Phosphoserine aminotransferase OS=Neisseria
           meningitidis serogroup C / serotype 2a (strain ATCC
           700532 / FAM18) GN=serC PE=3 SV=1
          Length = 368

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 7   LDMFCVRTGDGC--AAIARFLLLWTLSGLGWHRVPERLVEGEPPLRAGLPKEIL 162
           LD+  V T D    +A   F +  T++GL +  VP RL EG PPL   +  EIL
Sbjct: 133 LDLPPVETWDVAPDSAFVHFAVNETVNGLQYREVP-RLSEGMPPLVCDMSSEIL 185


>sp|O34370|SERC_NEIMA Phosphoserine aminotransferase OS=Neisseria
           meningitidis serogroup A GN=serC PE=3 SV=2
          Length = 368

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 7   LDMFCVRTGDGC--AAIARFLLLWTLSGLGWHRVPERLVEGEPPLRAGLPKEIL 162
           LD+  V T D    +A   F +  T++GL +  VP RL EG PPL   +  EIL
Sbjct: 133 LDLPPVETWDVAPDSAFVHFAVNETVNGLQYREVP-RLSEGMPPLVCDMSSEIL 185


>sp|Q811L6|MAST4_MOUSE Microtubule-associated serine/threonine-protein
            kinase 4 OS=Mus musculus GN=Mast4 PE=2 SV=2
          Length = 2618

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 140  ARNGGSPSTRRSGTRCHPSPDSVHSSRKRAMAAHPS 33
            AR G  P      TRC P P  +   ++  ++A PS
Sbjct: 2065 ARKGPEPKPEVPATRCPPQPPGIEGEKREKLSAAPS 2100
tr_hit_id A7PAI8
Definition tr|A7PAI8|A7PAI8_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera
Align length 70
Score (bit) 72.0
E-value 3.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956296|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_F23, 5'
         (622 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PAI8|A7PAI8_VITVI Chromosome chr14 scaffold_9, whole genome...    72   3e-11
tr|A9TBX6|A9TBX6_PHYPA Predicted protein OS=Physcomitrella paten...    63   1e-08
tr|Q9M895|Q9M895_ARATH Cell division protein FtsH-like protein (...    59   2e-07
tr|Q8LBL6|Q8LBL6_ARATH Cell division protein FtsH-like protein O...    59   2e-07
tr|Q1KUW7|Q1KUW7_9ROSI Putative uncharacterized protein OS=Cleom...    56   2e-06
tr|Q01FN0|Q01FN0_OSTTA Cell division protein FtsH-like protein (...    42   0.030
tr|B8AHS0|B8AHS0_ORYSI Putative uncharacterized protein OS=Oryza...    36   2.1  
tr|B7CZV1|B7CZV1_BURPS Putative uncharacterized protein OS=Burkh...    35   2.7  
tr|Q9CAB4|Q9CAB4_ARATH Putative uncharacterized protein F5A18.20...    35   2.7  
tr|Q3ECE6|Q3ECE6_ARATH Uncharacterized protein At1g70620.1 OS=Ar...    35   2.7  
tr|Q7XJW9|Q7XJW9_ORYSA OSJNBa0016O02.1 protein OS=Oryza sativa G...    35   2.8  
tr|Q01KF5|Q01KF5_ORYSA OSIGBa0115M15.4 protein OS=Oryza sativa G...    35   2.8  
tr|B8AV41|B8AV41_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.8  
tr|A3AUN5|A3AUN5_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.8  
tr|A2XH48|A2XH48_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.8  
tr|B6IPB9|B6IPB9_RHOCS Putative uncharacterized protein OS=Rhodo...    35   4.7  
tr|B3KI02|B3KI02_9BACI Putative uncharacterized protein OS=Geoba...    35   4.7  
tr|A1RD54|A1RD54_ARTAT Putative uncharacterized protein OS=Arthr...    34   6.1  
tr|A8IX96|A8IX96_CHLRE Predicted protein (Fragment) OS=Chlamydom...    34   6.1  
tr|Q4Q3G3|Q4Q3G3_LEIMA Putative uncharacterized protein OS=Leish...    34   6.1  
tr|Q013P7|Q013P7_OSTTA COG3781: Predicted membrane protein (ISS)...    34   6.2  
tr|Q69U06|Q69U06_ORYSJ Putative uncharacterized protein OSJNBa00...    34   7.9  
tr|A5C3J1|A5C3J1_VITVI Putative uncharacterized protein OS=Vitis...    34   7.9  
tr|Q0WYK0|Q0WYK0_PLAVI Circumsporozoite protein/thrombospondin-r...    34   7.9  
tr|A4I9L5|A4I9L5_LEIIN Putative uncharacterized protein OS=Leish...    34   7.9  

>tr|A7PAI8|A7PAI8_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038133001
           PE=3 SV=1
          Length = 582

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 33/70 (47%), Positives = 49/70 (70%)
 Frame = +2

Query: 365 AYARTHSKQAALSTLLGCTLAMGCLCLKLTTVPTPHFVPYSELVNHLRAGSVMSALFEEG 544
           A+ R H K+  L+T +   L +  L LKLTT+P+P  VPYS+LV  L++G V + LFEEG
Sbjct: 118 AFLRKHLKRVTLTTAISVALGLFYLFLKLTTLPSPKIVPYSDLVTSLQSGVVTNVLFEEG 177

Query: 545 SRRLFFDLKP 574
           SRR+++++ P
Sbjct: 178 SRRIYYNMDP 187


>tr|A9TBX6|A9TBX6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_220860 PE=3 SV=1
          Length = 495

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 44/67 (65%)
 Frame = +2

Query: 386 KQAALSTLLGCTLAMGCLCLKLTTVPTPHFVPYSELVNHLRAGSVMSALFEEGSRRLFFD 565
           K   L  L+ CT  +  L L+++  P P   PYS+L++H+ A +V SALFEEGS+RL F+
Sbjct: 17  KPLLLGALVTCTFTLVALFLRVSAGPAPQNTPYSDLIDHIHARTVTSALFEEGSQRLLFN 76

Query: 566 LKPIEGE 586
           ++P+  E
Sbjct: 77  VQPVVKE 83


>tr|Q9M895|Q9M895_ARATH Cell division protein FtsH-like protein
           (At3g02450) OS=Arabidopsis thaliana GN=At3g02450/F16B3.8
           PE=2 SV=1
          Length = 622

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 28/66 (42%), Positives = 42/66 (63%)
 Frame = +2

Query: 368 YARTHSKQAALSTLLGCTLAMGCLCLKLTTVPTPHFVPYSELVNHLRAGSVMSALFEEGS 547
           + + + K+  LST +     +  L L+LT VP+P  VPYS+ V +LR GSV   L EEGS
Sbjct: 139 FLKKNLKRVILSTGVALIFGLCYLFLRLTAVPSPSIVPYSDFVTNLRGGSVSKVLLEEGS 198

Query: 548 RRLFFD 565
           RR++++
Sbjct: 199 RRIYYN 204


>tr|Q8LBL6|Q8LBL6_ARATH Cell division protein FtsH-like protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 622

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 28/66 (42%), Positives = 42/66 (63%)
 Frame = +2

Query: 368 YARTHSKQAALSTLLGCTLAMGCLCLKLTTVPTPHFVPYSELVNHLRAGSVMSALFEEGS 547
           + + + K+  LST +     +  L L+LT VP+P  VPYS+ V +LR GSV   L EEGS
Sbjct: 139 FLKKNLKRVILSTGVALIFGLCYLFLRLTAVPSPSIVPYSDFVTNLRGGSVSKVLLEEGS 198

Query: 548 RRLFFD 565
           RR++++
Sbjct: 199 RRIYYN 204


>tr|Q1KUW7|Q1KUW7_9ROSI Putative uncharacterized protein OS=Cleome
           spinosa PE=3 SV=1
          Length = 635

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 41/66 (62%)
 Frame = +2

Query: 368 YARTHSKQAALSTLLGCTLAMGCLCLKLTTVPTPHFVPYSELVNHLRAGSVMSALFEEGS 547
           + R + ++  LST +     +    L+LT VP+P  VPYS+ + +L+ GSV   L EEGS
Sbjct: 139 FLRKNIRRVILSTCVAFVFGLCYTFLRLTAVPSPAIVPYSDFITNLQGGSVSKVLLEEGS 198

Query: 548 RRLFFD 565
           RR++++
Sbjct: 199 RRIYYN 204


>tr|Q01FN0|Q01FN0_OSTTA Cell division protein FtsH-like protein
           (ISS) (Fragment) OS=Ostreococcus tauri GN=Ot01g05490
           PE=3 SV=1
          Length = 659

 Score = 42.0 bits (97), Expect = 0.030
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +2

Query: 467 PHFVPYSELVNHLRAGSVMSALFEEGSRRLFFDLKPIEGEAASA 598
           P    YS  +  L+AG + S  FEEGS RL +DLK +  ++ASA
Sbjct: 222 PPTAMYSAFLKDLKAGRISSVRFEEGSTRLVYDLKDVSAKSASA 265


>tr|B8AHS0|B8AHS0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05856 PE=4 SV=1
          Length = 118

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +2

Query: 476 VPYSELVNHLRAGSVMSALFEEGSRRLFF 562
           V YS+L+  LRAG V +  FEE SRR++F
Sbjct: 42  VAYSDLLTGLRAGDVTAVAFEEDSRRIYF 70


>tr|B7CZV1|B7CZV1_BURPS Putative uncharacterized protein
           OS=Burkholderia pseudomallei 576 GN=BUC_4974 PE=4 SV=1
          Length = 244

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = -3

Query: 242 CVYVVYAAPARLLCSCSGPRKRTQHS-----RRISFGKPARNGGSPSTRRSGTRCHPSPD 78
           C   + A   R  C+ +G R    H+     RR    +PA NG S    R+  RC  S  
Sbjct: 108 CACTLRACSNRTACTSAGHRTCAAHANAPFQRRSPRRRPAMNGESSHACRAPRRCFRSDY 167

Query: 77  SVHSSRKRAMAA 42
           + H+ R R  AA
Sbjct: 168 AAHTGRSRRAAA 179


>tr|Q9CAB4|Q9CAB4_ARATH Putative uncharacterized protein F5A18.20
           OS=Arabidopsis thaliana GN=At1g70620 PE=4 SV=1
          Length = 884

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -3

Query: 191 GPRKRTQHSRRISFGKPARNGGSPSTRRSGTRCHPSPDSVHSSRKRAMAAHPSPVLTQNI 12
           G RK  +     S  + A N      RRS T    S DS   SR R  +  PSPV ++  
Sbjct: 791 GKRKEKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSRSRRRSVSPSPVRSRRK 850

Query: 11  SSS 3
            SS
Sbjct: 851 RSS 853


>tr|Q3ECE6|Q3ECE6_ARATH Uncharacterized protein At1g70620.1
           OS=Arabidopsis thaliana GN=At1g70620 PE=4 SV=1
          Length = 897

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -3

Query: 191 GPRKRTQHSRRISFGKPARNGGSPSTRRSGTRCHPSPDSVHSSRKRAMAAHPSPVLTQNI 12
           G RK  +     S  + A N      RRS T    S DS   SR R  +  PSPV ++  
Sbjct: 761 GKRKEKEKEEERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSRSRRRSVSPSPVRSRRK 820

Query: 11  SSS 3
            SS
Sbjct: 821 RSS 823