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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956292
Clone id TST39A01NGRL0025_F19
Library
Length 611
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_F19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTGACTAGCTTGGTCGAGGTGGTGCTCTCAAATATGGCCGCTCTACATCTTCCTGTTGC
CTATCATCCTCACGAGAGTTGCTCAGCTAGGCCTCGCTTACGAGAGGACAATCTGCAGAA
ACCGCCCAGGTTAGCTCCTTCGCTGGATACTTACACTCACAGAGAGGAGAAATTCGTCCT
TGGAAGAGGTTTAGGTACTGTCTGCCATGCAAAGAAGGAGCACAGAGAGAGAAGGGACCC
TTTCGGACAAGACCCCTCTCTCAGACTCAATGAAGAAATGCACGGCTTTGGGCAAAATGC
TGGAAGTGGGTGCTCATCTCTGTGTAGTGATAGCGGGTCTTCTGGGTCTGAGCAACGTAA
TGTTATGGTTTACTATCGCAACAGGAAGAAAGCGTGGCTTGATCCTTTTAACTTCGGGGA
TTTACCCGGGTTTTTTGCCGGTGCAGAATTTGCTGAAGAGGGTCTTCAAGACCCAGAGCC
CCTAAGTTTTCCCGTGGATCCCAACAGCGAATATGGATTTCTTGATTTTCCTAAGCAATA
TAATGTGGAGATGGCATCCCTTCCCCTTCTTGCAAGAGGCGATGTCCGCAAATGCTGCTG
CATCGTTGCCG
■■Homology search results ■■ -
sp_hit_id Q9EP79
Definition sp|Q9EP79|VN1A7_MOUSE Vomeronasal type-1 receptor A7 OS=Mus musculus
Align length 95
Score (bit) 30.4
E-value 7.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956292|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_F19, 5'
         (611 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EP79|VN1A7_MOUSE Vomeronasal type-1 receptor A7 OS=Mus musc...    30   7.5  
sp|Q54HG9|RPN2_DICDI Dolichyl-diphosphooligosaccharide--protein ...    30   7.5  
sp|Q9NRI5|DISC1_HUMAN Disrupted in schizophrenia 1 protein OS=Ho...    30   7.5  

>sp|Q9EP79|VN1A7_MOUSE Vomeronasal type-1 receptor A7 OS=Mus
           musculus GN=V1ra7 PE=2 SV=1
          Length = 309

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 22/95 (23%), Positives = 43/95 (45%)
 Frame = +3

Query: 324 VVIAGLLGLSNVMLWFTIATGRKRGLILLTSGIYPGFLPVQNLLKRVFKTQSP*VFPWIP 503
           V + GL+GLS   +   +   + R   L  S + P   P Q  L+ +    S     ++ 
Sbjct: 194 VFVIGLMGLSTCYMATLLCRHKTRSQRLQNSKLSPKATPEQRALRTILMLMS----FFLL 249

Query: 504 TANMDFLIFLSNIMWRWHPFPFLQEAMSANAAASL 608
            +  D +I  S  + + +P PF  + + A++ A++
Sbjct: 250 MSTFDSIISYSRTILQGNPLPFCFQILVAHSYAAV 284


>sp|Q54HG9|RPN2_DICDI Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase subunit swp1 OS=Dictyostelium
           discoideum GN=swp1 PE=3 SV=1
          Length = 685

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 2   LTSLVEVVLSNMAALHLPVAYHPHESCSARPRLREDNLQK 121
           L S ++V L N+A L +P+ +  H+S S    L   N++K
Sbjct: 645 LHSTMDVTLKNLALLMIPLVFFGHKSMSYYSNLSSSNIKK 684


>sp|Q9NRI5|DISC1_HUMAN Disrupted in schizophrenia 1 protein OS=Homo
           sapiens GN=DISC1 PE=1 SV=3
          Length = 854

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
 Frame = -1

Query: 164 LCECKYPAKELTWAVSAD-CPLV------SEA*LSNSREDDRQQEDVERPYLRAPPR 15
           LC CK P     W    + C L+       EA  S S ED+RQ +D+E      PPR
Sbjct: 679 LCSCKCPLLGKVWEADLEACRLLIQSLQLQEARGSLSVEDERQMDDLEGAAPPIPPR 735
tr_hit_id Q9S9N6
Definition tr|Q9S9N6|Q9S9N6_ARATH T24D18.8 protein (At1g15980/T24D18_8) (Putative uncharacterized protein) OS=Arabidopsis thaliana
Align length 85
Score (bit) 75.9
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956292|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_F19, 5'
         (611 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9S9N6|Q9S9N6_ARATH T24D18.8 protein (At1g15980/T24D18_8) (Pu...    76   2e-12
tr|B6SP99|B6SP99_MAIZE Putative uncharacterized protein OS=Zea m...    66   1e-09
tr|A7QG07|A7QG07_VITVI Chromosome chr9 scaffold_90, whole genome...    61   6e-08
tr|Q6ZG03|Q6ZG03_ORYSJ Os08g0276100 protein OS=Oryza sativa subs...    58   5e-07
tr|B8B8Z9|B8B8Z9_ORYSI Putative uncharacterized protein OS=Oryza...    58   5e-07
tr|A9SCR2|A9SCR2_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|A9SL24|A9SL24_PHYPA Predicted protein OS=Physcomitrella paten...    54   7e-06
tr|A5PD35|A5PD35_9SPHN Na+/H+ antiporter, CPA1 family protein OS...    36   2.0  
tr|B4SPR5|B4SPR5_STRM5 Alkaline phosphatase OS=Stenotrophomonas ...    34   7.6  
tr|B2FLD6|B2FLD6_STRMK Putative exported alkaline phosphatase D ...    34   7.6  
tr|B6VKQ0|B6VKQ0_9ENTR Putative transcriptional regulator, sorc ...    34   7.6  
tr|Q4DYK8|Q4DYK8_TRYCR Putative uncharacterized protein OS=Trypa...    34   7.6  
tr|Q4DCD0|Q4DCD0_TRYCR Putative uncharacterized protein OS=Trypa...    34   7.6  

>tr|Q9S9N6|Q9S9N6_ARATH T24D18.8 protein (At1g15980/T24D18_8)
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At1g15980 PE=2 SV=1
          Length = 461

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +2

Query: 359 NVMVYYRNRKKAWLDPFNFGDLPXXXXXXXXXXXXL-QDPEPLSFPVDPNSEYGFLDFPK 535
           +V V  + +   WLDPF+ G+ P              +DP P   P +P++ YGFL FPK
Sbjct: 42  DVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRP---PDNPDNPYGFLKFPK 98

Query: 536 QYNVEMASLPLLARGDVRKCCCIVA 610
            Y VE+ASLPL  RGDVR+CCC+++
Sbjct: 99  GYTVELASLPLKIRGDVRRCCCVIS 123


>tr|B6SP99|B6SP99_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 466

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = +2

Query: 353 QRNVMVYYRNRKKAWLDPFNFG-DLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDF 529
           +R+V  +   +K  WLDPF+ G D               +DP P   P DP + YGFL F
Sbjct: 37  RRSVAAWSAKKKNPWLDPFDDGPDEEFDYQGMFSGGKQEEDPRP---PEDPENPYGFLRF 93

Query: 530 PKQYNVEMASLPLLARGDVRKCCCIVA 610
           P+ YN E+ SL    RGDVR+ CC+V+
Sbjct: 94  PQGYNPELDSLASKVRGDVRRACCVVS 120


>tr|A7QG07|A7QG07_VITVI Chromosome chr9 scaffold_90, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037644001
           PE=4 SV=1
          Length = 395

 Score = 60.8 bits (146), Expect = 6e-08
 Identities = 26/48 (54%), Positives = 36/48 (75%)
 Frame = +2

Query: 467 QDPEPLSFPVDPNSEYGFLDFPKQYNVEMASLPLLARGDVRKCCCIVA 610
           +DP P   P +P++ YGFL FP  Y+VE+ASL L  RGDVR+CCC+++
Sbjct: 14  EDPRP---PDNPDNPYGFLKFPMGYSVEIASLALKVRGDVRRCCCVIS 58


>tr|Q6ZG03|Q6ZG03_ORYSJ Os08g0276100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1118_F05.12 PE=2 SV=1
          Length = 469

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +2

Query: 383 RKKAWLDPFNFG-DLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDFPKQYNVEMAS 559
           +K  WLDPF+ G D               +DP P   P DP + YGFL FP  YN E+ S
Sbjct: 50  KKNPWLDPFDDGPDDEFDYRGAFSGGKQEEDPRP---PEDPANPYGFLRFPAGYNPELDS 106

Query: 560 LPLLARGDVRKCCCIVA 610
           L    R DVR+ CC+V+
Sbjct: 107 LASKVRRDVRRACCVVS 123


>tr|B8B8Z9|B8B8Z9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28562 PE=4 SV=1
          Length = 462

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +2

Query: 383 RKKAWLDPFNFG-DLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDFPKQYNVEMAS 559
           +K  WLDPF+ G D               +DP P   P DP + YGFL FP  YN E+ S
Sbjct: 45  KKNPWLDPFDDGPDDEFDYRGAFSGGKQEEDPRP---PEDPANPYGFLRFPAGYNPELDS 101

Query: 560 LPLLARGDVRKCCCIVA 610
           L    R DVR+ CC+V+
Sbjct: 102 LASKVRRDVRRACCVVS 118


>tr|A9SCR2|A9SCR2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106212 PE=4 SV=1
          Length = 475

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
 Frame = +2

Query: 386 KKAWLD-PFNFG---DLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDFPKQYNVEM 553
           KK W D PF++G   +               +DP P     DP+SE G+LDFP  +  E+
Sbjct: 63  KKGWFDDPFDYGADDEEDTMGELMSQGPQGAEDPRPAR---DPDSESGYLDFPAGFMPEV 119

Query: 554 ASLPLLARGDVRKCCCIVA 610
           ASL +L R DVR+C C+++
Sbjct: 120 ASLGILIRNDVRRCLCMIS 138


>tr|A9SL24|A9SL24_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233534 PE=4 SV=1
          Length = 473

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +2

Query: 383 RKKAWLD-PFNFGDLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDFPKQYNVEMAS 559
           +KK W D PF++G                Q+ E      DP+SE G+LDFP  +  E+AS
Sbjct: 60  KKKGWFDDPFDYGADEEEDTMGELMSQGPQEAEDPRPSRDPDSESGYLDFPAGFMPEVAS 119

Query: 560 LPLLARGDVRKCCCIVA 610
           L  L R DVR+C C+V+
Sbjct: 120 LGTLIRNDVRRCLCMVS 136


>tr|A5PD35|A5PD35_9SPHN Na+/H+ antiporter, CPA1 family protein
           OS=Erythrobacter sp. SD-21 GN=ED21_31429 PE=4 SV=1
          Length = 452

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 6   LAWSRWCSQIWPLYIFLLPIILTRVAQLG 92
           ++W  W SQIWPL +F +P+ +  VA LG
Sbjct: 90  VSWKNW-SQIWPLLVFAMPLTIAAVALLG 117


>tr|B4SPR5|B4SPR5_STRM5 Alkaline phosphatase OS=Stenotrophomonas
           maltophilia (strain R551-3) GN=Smal_2635 PE=3 SV=1
          Length = 529

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +1

Query: 109 QSAETAQVSSFAGYLHSQRGEIRPWKRFRYCLPCKEGAQREKGPFRTRPLSQTQ*RNARL 288
           Q    A V   A  +H +   +RP + + Y   C    +   G FRT PL  TQ +  RL
Sbjct: 99  QRGVAAAVPELAHSVHVEVSGLRPGRDYYYRFACDGDEESAVGHFRTAPLPDTQLQQLRL 158

Query: 289 -WAKCWKW 309
               C  W
Sbjct: 159 ALCTCQAW 166


>tr|B2FLD6|B2FLD6_STRMK Putative exported alkaline phosphatase D
           OS=Stenotrophomonas maltophilia (strain K279a) GN=phoD
           PE=3 SV=1
          Length = 529

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +1

Query: 109 QSAETAQVSSFAGYLHSQRGEIRPWKRFRYCLPCKEGAQREKGPFRTRPLSQTQ*RNARL 288
           Q    A V   A  +H +   +RP + + Y   C    +   G FRT PL  TQ +  RL
Sbjct: 99  QRGVAAAVPELAHSVHVEVNGLRPGRDYYYRFACDGDEESAVGHFRTAPLPDTQLQQLRL 158

Query: 289 -WAKCWKW 309
               C  W
Sbjct: 159 ALCTCQAW 166