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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956229
Clone id TST39A01NGRL0025_D04
Library
Length 475
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_D04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CAACATTTCATCCTAAGTTTTACCAACTTTTTGAGAGTTGGTCAAGGATAATGAAAGCCA
TCCATGATCACCACGTCCCTTTGAGGTTCTGATCCAAGCATCATATATAAGTACTGTCAC
TTTCATTTAAGTGTGTCTGATTCGCTGGTGTTTTGTTTTTTGGATGAGTTTTCTGGCGTC
CCACCTTTTTTGCAAGACAGCTATTCACCACCTTGAAATACCCCTACAGAATTATAATTG
TAAGTGGATAACCGACCACGTGGCCATCAGCTCAGGCCAATCCAGAACCTACATGGAAAA
TTGATTATCTGGCAGTACTGTACTCCTATGACAGCACACTGCTACAGCATGTGATGCTGG
TCCACCTGCTTTGAGAACACCCATTTTGGATCGGAGCTGGTTTTGCAGCTGGAGAATGAC
ATTAATTTTATGAGTATGGTCGGGCAATTTCTTCGTGATCGATGAGATCAAGGAG
■■Homology search results ■■ -
sp_hit_id Q2EEX5
Definition sp|Q2EEX5|YCF78_HELSJ Uncharacterized membrane protein ycf78 OS=Helicosporidium sp. subsp. Simulium jonesii
Align length 44
Score (bit) 31.2
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956229|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_D04, 5'
         (475 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2EEX5|YCF78_HELSJ Uncharacterized membrane protein ycf78 OS=...    31   2.5  
sp|P42445|RECA_HELPY Protein recA OS=Helicobacter pylori GN=recA...    30   4.2  
sp|Q1CV04|RECA_HELPH Protein recA OS=Helicobacter pylori (strain...    30   4.2  
sp|Q17YV1|RECA_HELAH Protein recA OS=Helicobacter acinonychis (s...    30   4.2  
sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 OS=T...    30   4.2  
sp|Q5U308|LRC8D_RAT Leucine-rich repeat-containing protein 8D OS...    30   4.2  
sp|Q8BGR2|LRC8D_MOUSE Leucine-rich repeat-containing protein 8D ...    30   4.2  
sp|Q7L1W4|LRC8D_HUMAN Leucine-rich repeat-containing protein 8D ...    30   4.2  
sp|Q30P05|RECA_SULDN Protein recA OS=Sulfurimonas denitrificans ...    30   5.5  
sp|Q7VIH2|RECA_HELHP Protein recA OS=Helicobacter hepaticus GN=r...    30   5.5  
sp|P96955|RECA_NEIPO Protein recA (Fragment) OS=Neisseria polysa...    30   7.2  
sp|A1KUQ0|RECA_NEIMF Protein recA OS=Neisseria meningitidis sero...    30   7.2  
sp|P56988|RECA_NEIMB Protein recA OS=Neisseria meningitidis sero...    30   7.2  
sp|P56987|RECA_NEIMA Protein recA OS=Neisseria meningitidis sero...    30   7.2  
sp|P97195|RECA_NEILA Protein recA (Fragment) OS=Neisseria lactam...    30   7.2  
sp|P21152|RECA_NEIGO Protein recA OS=Neisseria gonorrhoeae GN=re...    30   7.2  
sp|Q5F8M9|RECA_NEIG1 Protein recA OS=Neisseria gonorrhoeae (stra...    30   7.2  
sp|O86382|RECA_NEIEG Protein recA (Fragment) OS=Neisseria elonga...    30   7.2  
sp|Q59595|RECA_NEICI Protein recA (Fragment) OS=Neisseria cinere...    30   7.2  
sp|Q5HSC0|RECA_CAMJR Protein recA OS=Campylobacter jejuni (strai...    30   7.2  
sp|A1W1S5|RECA_CAMJJ Protein recA OS=Campylobacter jejuni subsp....    30   7.2  
sp|Q0P7V6|RECA_CAMJE Protein recA OS=Campylobacter jejuni GN=rec...    30   7.2  
sp|A8FNY4|RECA_CAMJ8 Protein recA OS=Campylobacter jejuni subsp....    30   7.2  
sp|Q7M8Q1|RECA_WOLSU Protein recA OS=Wolinella succinogenes GN=r...    29   9.4  
sp|Q9ZMS7|RECA_HELPJ Protein recA OS=Helicobacter pylori J99 GN=...    29   9.4  
sp|O67905|RECA_AQUAE Protein recA OS=Aquifex aeolicus GN=recA PE...    29   9.4  

>sp|Q2EEX5|YCF78_HELSJ Uncharacterized membrane protein ycf78
           OS=Helicosporidium sp. subsp. Simulium jonesii GN=ycf78
           PE=3 SV=1
          Length = 1168

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +2

Query: 80  FEVLIQASYISTVTFI*VCLIRWCFVFWMSFLASHLFCKTAIHH 211
           FE  I +S+I  V FI   LIR  F F++SF+  + F    IHH
Sbjct: 234 FEFFINSSFIQLVLFI---LIR-SFFFYLSFIIIYPFILNKIHH 273


>sp|P42445|RECA_HELPY Protein recA OS=Helicobacter pylori GN=recA
           PE=1 SV=2
          Length = 347

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 471 LISSITKKLPDHTHKINVILQLQNQLRSKMGVLKAGGP 358
           L+S   +K+    HK+N  L   NQ+R K+G++  G P
Sbjct: 171 LMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSP 208


>sp|Q1CV04|RECA_HELPH Protein recA OS=Helicobacter pylori (strain
           HPAG1) GN=recA PE=3 SV=1
          Length = 347

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 471 LISSITKKLPDHTHKINVILQLQNQLRSKMGVLKAGGP 358
           L+S   +K+    HK+N  L   NQ+R K+G++  G P
Sbjct: 171 LMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSP 208


>sp|Q17YV1|RECA_HELAH Protein recA OS=Helicobacter acinonychis
           (strain Sheeba) GN=recA PE=3 SV=1
          Length = 347

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 471 LISSITKKLPDHTHKINVILQLQNQLRSKMGVLKAGGP 358
           L+S   +K+    HK+N  L   NQ+R K+G++  G P
Sbjct: 171 LMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSP 208


>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5
           OS=Trypanosoma brucei brucei GN=ND5 PE=3 SV=1
          Length = 590

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 71  PRPFEVLIQASYISTVTFI*VCLIRWCFVFWMSFLASHLFCKTAI 205
           P P   LI A+ +     I +  + WCF FW S+  + +   T I
Sbjct: 240 PIPVSALIHAATLVVCGIILLSFVYWCFDFWFSYFYNLIGWSTLI 284


>sp|Q5U308|LRC8D_RAT Leucine-rich repeat-containing protein 8D
           OS=Rattus norvegicus GN=Lrrc8d PE=2 SV=1
          Length = 858

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/82 (20%), Positives = 40/82 (48%)
 Frame = +2

Query: 158 FWMSFLASHLFCKTAIHHLEIPLQNYNCKWITDHVAISSGQSRTYMEN*LSGSTVLL*QH 337
           FW  +  +   C    H + I  + +   W T  ++ ++ +     +  ++G+  L  +H
Sbjct: 182 FWFKYPKT---CSKVEHFVSILGKCFESPWTTKALSETACEDSEENKQRITGAQTLP-KH 237

Query: 338 TATACDAGPPALRTPILDRSWF 403
            +T+ D G P+  TP+++++ F
Sbjct: 238 VSTSSDEGSPSASTPMINKTGF 259


>sp|Q8BGR2|LRC8D_MOUSE Leucine-rich repeat-containing protein 8D
           OS=Mus musculus GN=Lrrc8d PE=2 SV=1
          Length = 859

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/82 (20%), Positives = 40/82 (48%)
 Frame = +2

Query: 158 FWMSFLASHLFCKTAIHHLEIPLQNYNCKWITDHVAISSGQSRTYMEN*LSGSTVLL*QH 337
           FW  +  +   C    H + I  + +   W T  ++ ++ +     +  ++G+  L  +H
Sbjct: 183 FWFKYPKT---CSKVEHFVSILGKCFESPWTTKALSETACEDSEENKQRITGAQTLP-KH 238

Query: 338 TATACDAGPPALRTPILDRSWF 403
            +T+ D G P+  TP+++++ F
Sbjct: 239 VSTSSDEGSPSASTPMINKTGF 260


>sp|Q7L1W4|LRC8D_HUMAN Leucine-rich repeat-containing protein 8D
           OS=Homo sapiens GN=LRRC8D PE=1 SV=1
          Length = 858

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/82 (20%), Positives = 40/82 (48%)
 Frame = +2

Query: 158 FWMSFLASHLFCKTAIHHLEIPLQNYNCKWITDHVAISSGQSRTYMEN*LSGSTVLL*QH 337
           FW  +  +   C    H + I  + +   W T  ++ ++ +     +  ++G+  L  +H
Sbjct: 182 FWFKYPKT---CSKVEHFVSILGKCFESPWTTKALSETACEDSEENKQRITGAQTLP-KH 237

Query: 338 TATACDAGPPALRTPILDRSWF 403
            +T+ D G P+  TP+++++ F
Sbjct: 238 VSTSSDEGSPSASTPMINKTGF 259


>sp|Q30P05|RECA_SULDN Protein recA OS=Sulfurimonas denitrificans
           (strain ATCC 33889 / DSM 1251) GN=recA PE=3 SV=1
          Length = 345

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 471 LISSITKKLPDHTHKINVILQLQNQLRSKMGVLKAGGP 358
           L+S   +KL    HK+N  +   NQ+R K+G++  G P
Sbjct: 169 LMSKALRKLTGILHKMNCTVIFINQIRMKIGMMGYGSP 206


>sp|Q7VIH2|RECA_HELHP Protein recA OS=Helicobacter hepaticus GN=recA
           PE=3 SV=1
          Length = 345

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 471 LISSITKKLPDHTHKINVILQLQNQLRSKMGVLKAGGP 358
           L+S   +K+    HK+N  L   NQ+R K+G +  G P
Sbjct: 170 LMSHALRKITGVLHKMNATLIFINQIRMKIGTMGYGSP 207
tr_hit_id Q55D94
Definition tr|Q55D94|Q55D94_DICDI Sphingolipid delta 4 desaturase OS=Dictyostelium discoideum
Align length 72
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956229|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_D04, 5'
         (475 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q55D94|Q55D94_DICDI Sphingolipid delta 4 desaturase OS=Dictyo...    37   0.38 
tr|A6G7R7|A6G7R7_9DELT Putative uncharacterized protein OS=Plesi...    34   3.2  
tr|B6LAN1|B6LAN1_BRAFL Putative uncharacterized protein OS=Branc...    34   4.2  
tr|Q93CN0|Q93CN0_HELPY Protein recA (Fragment) OS=Helicobacter p...    33   9.2  
tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branc...    33   9.2  

>tr|Q55D94|Q55D94_DICDI Sphingolipid delta 4 desaturase
           OS=Dictyostelium discoideum GN=desA PE=4 SV=1
          Length = 361

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 22/72 (30%), Positives = 38/72 (52%)
 Frame = +2

Query: 77  PFEVLIQASYISTVTFI*VCLIRWCFVFWMSFLASHLFCKTAIHHLEIPLQNYNCKWITD 256
           PF + + A+YI  +TF  V + +W  V+ M++L   L    ++  L  PL     +WI +
Sbjct: 219 PFSMWLVANYICNITFTYV-IFQWVGVYGMTYLV--LSSLMSVGFLLHPL---GARWIAE 272

Query: 257 HVAISSGQSRTY 292
           H A++  +  TY
Sbjct: 273 HFAVTQSEQETY 284


>tr|A6G7R7|A6G7R7_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_34547 PE=4 SV=1
          Length = 704

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -2

Query: 111 LIYDAWIRTSKGRGDHGWLSLSLTNSQKVGKT 16
           L+Y+AWIR+++G G+  W  +SLT    V KT
Sbjct: 541 LVYEAWIRSAEGAGEPAW--VSLTQDGPVSKT 570


>tr|B6LAN1|B6LAN1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_68220 PE=4 SV=1
          Length = 1129

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -1

Query: 196 LAKKVGRQKTHPKNKTPANQTHLNESDSTYI*CLDQNLKGT 74
           L KK+ ++K H  +K  A+ +H++ESDS     +DQN+  T
Sbjct: 137 LQKKISKRKAHQTHKDTASSSHISESDS-----VDQNVPDT 172


>tr|Q93CN0|Q93CN0_HELPY Protein recA (Fragment) OS=Helicobacter
           pylori GN=recA PE=3 SV=1
          Length = 248

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 471 LISSITKKLPDHTHKINVILQLQNQLRSKMGVLKAGGP 358
           L+S   +K+    HK+N  L   NQ+R K+G++  GGP
Sbjct: 137 LMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGGP 174


>tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_108391 PE=4 SV=1
          Length = 1131

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 196 LAKKVGRQKTHPKNKTPANQTHLNESDSTYI*CLDQNLKGT 74
           L KK+ + K H  +K  A+ +H++ESDS     +DQN+  T
Sbjct: 178 LQKKISKWKAHQTHKDTASSSHISESDS-----VDQNVPDT 213