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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956211
Clone id TST39A01NGRL0025_C10
Library
Length 626
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_C10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTGATTCCTGGGTCAATTTTTGTTAGCAAAATGCTAGACGTCCTCTTGCAGCAGGAACG
CGCGTGCTGAGAACGGAGTGATCGCGGGAGCCTGGTCGCTGCCTGGAGAGAGAGAGAGAG
AGAGAGAGAGAAAACAGATGTACCGAAGGTTTGGGCTCACCCTTGCACGATCGCGCTGGA
GGCCATGTGTGCGCACCCTCGGCATATTATCAAGCTCGAGCTCCTCCCCCGATTTCATAC
CCATTTTCGCCAGTTCCCGCATGCAATATGCTTCTCGTGGTAGAGGAGGCAGTCGAGGTC
GAGGTCGAGGTGGCGCTTCCAAAAGAGATGACAGTGAGGATGACGATGACGATGACGATT
CTGAGGACGATGACGATGAGGATGAGGAGTTTCAGGAGGAACCGGACACTCCTGGTTATG
AATTTGATTATGAAACATGGAACTTGCTTCATCAGGGGAAAAAAGAGGGACAAATAAGCA
GAAAAGAGCCTCTCCCAATGTATAAGGCTCGTGAGATGGTGGATTATCACATGATGAAAA
AACGCATTGATGGTCTTAAAGTAATTACAGATCCAAAGATGGAGTATGACCTGAGGAAGC
AGTTCCATGAAGGTATGGTGGACTTC
■■Homology search results ■■ -
sp_hit_id P39057
Definition sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary OS=Anthocidaris crassispina
Align length 50
Score (bit) 31.6
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956211|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_C10, 5'
         (626 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary OS=Anthocidaris ...    32   3.5  
sp|Q5BJK8|GOLI4_RAT Golgi integral membrane protein 4 OS=Rattus ...    31   5.9  
sp|P18040|ENV_HV2G1 Envelope glycoprotein gp160 OS=Human immunod...    31   5.9  
sp|Q9TC94|YMF16_NEPOL Uncharacterized tatC-like protein ymf16 OS...    30   7.7  

>sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary OS=Anthocidaris
            crassispina PE=1 SV=1
          Length = 4466

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 552  HQCVFSSCDNPPSHEPYTLGEAL---FCLFVPLFSPDEASSMFHNQIHNQ 412
            H+C + SC NP S   +T+   L   FC+F   F   +A S  +N I +Q
Sbjct: 2566 HKCQYVSCMNPTSGS-FTINSRLQRHFCVFALSFPGQDALSTIYNSILSQ 2614


>sp|Q5BJK8|GOLI4_RAT Golgi integral membrane protein 4 OS=Rattus
           norvegicus GN=Golim4 PE=1 SV=2
          Length = 653

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 447 LHQGKKEGQISRKEPLPMYKAREMVDYHMMKKRIDGLKVITDPKMEYDLRKQFHEGMVD 623
           LHQ +  GQ+ R++    Y AREM      +K+ D      + + +Y LR+Q H   V+
Sbjct: 397 LHQQRLHGQLLRQQQQQQYLAREMA----QQKQADH----EEGQQQYQLRQQAHSDAVE 447


>sp|P18040|ENV_HV2G1 Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 2 (isolate Ghana-1 subtype
           A) GN=env PE=3 SV=1
          Length = 851

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 617 HTFMELLPQVILHLW-ICNYFKTINAFFHHVIIHHLTSLIHWERLFSAYL 471
           H  + LL +++  L+ IC    + N+  H +I  +LT++  W RL +AYL
Sbjct: 746 HFLIHLLTRLLTGLYKICRDLLSTNSPTHRLISQNLTAIRDWLRLKAAYL 795


>sp|Q9TC94|YMF16_NEPOL Uncharacterized tatC-like protein ymf16
           OS=Nephroselmis olivacea GN=YMF16 PE=3 SV=1
          Length = 247

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -1

Query: 620 HHTFMELLPQVILHLWICNY---FKTINAFFHHVIIHHLTSLIHWERLFSAYLSLFFPLM 450
           H  F E+      ++++C +   + T   FF+      + S   +ERL   +LS FF  +
Sbjct: 55  HLIFTEMSEAFHTYIFLCFFTSIYCTFPYFFYQFWAFFIPSTYQFERLQLRFLSFFFFTL 114

Query: 449 KQVPCFIIKFI 417
               C II FI
Sbjct: 115 LFFSCIIIYFI 125
tr_hit_id B8KB90
Definition tr|B8KB90|B8KB90_VIBPA Fimbrial assembly protein OS=Vibrio parahaemolyticus 16
Align length 61
Score (bit) 33.9
E-value 8.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956211|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_C10, 5'
         (626 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8KB90|B8KB90_VIBPA Fimbrial assembly protein OS=Vibrio parah...    34   8.1  

>tr|B8KB90|B8KB90_VIBPA Fimbrial assembly protein OS=Vibrio
           parahaemolyticus 16 GN=pilQ PE=4 SV=1
          Length = 553

 Score = 33.9 bits (76), Expect = 8.1
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 426 DYETWNLLHQGKKEGQIS-RKEPLPMYKAREMV-DYHMMKKRIDGLKVITDPKMEYDLRK 599
           DY  +NL+     +G ++ R + +P  +  +++     + KRIDG  V+  PK E DLR+
Sbjct: 159 DYNDFNLVVSDSVQGNLTLRLDGVPWQQVLDIILQVKGLDKRIDGNVVLVAPKAELDLRE 218

Query: 600 Q 602
           Q
Sbjct: 219 Q 219