DK956160 |
Clone id |
TST39A01NGRL0025_A07 |
Library |
TST39 |
Length |
653 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_A07. 5' end sequence. |
Accession |
DK956160 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GTAACTCCAACACTCAAATACCAGCACTTTACTTTCACTATCAAGCGTCGACTGCAAACG TTGCAAGGGCGGGAAATGCCGATCTACGCTGAGCTAGACGCGCGAGGAGAGTGAGAGTTC CTGTTGCGAGACAATGCCGCGCGAGATTATCACACTGCAGGTGGGACAATGCGGCAATCA AATTGGTATGGAATTTTGGAAGCAGCTTTGCTTGGAGCATGGCATCAGCAAAGAAGGCAT GCTTGAAGACTTCGCCACACAGGGTGGAGACAGGAAGGATGTTTTCTTTTATCAGGCCGA CGATGAGCACTACATTCCTAGAGCCCTGCTATTAGATTTGGAGCCAAGGGTAATCAATGG CATTCAGAACAGCGAGTACAAGAACTTATACAATCATGAAAATGTGTTTGTAGCTGACCA TGGAGGTGGTGCTGGAAATAATTGGGCTAGTGGCTACCACCAGGGAGAACAAGTTGAAGA GGATATAATGGATATGATAGATAGAGAGGCTGATGGCAGTGACAGTCTTGAAGGATTTGT GCTTTGCCATTCTATTGCTGGAGGGACAGGTTCCGGAATGGGATCATACCTGCTGGAAGC TTTAAATGATCGATATAGCAAGAAACTCGTACAAACATACAGTGTATTCCCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P34785 |
Definition |
sp|P34785|TBG_ANEPH Tubulin gamma chain OS=Anemia phyllitidis |
Align length |
173 |
Score (bit) |
360.0 |
E-value |
3.0e-99 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TMJ1 |
Definition |
tr|A9TMJ1|A9TMJ1_PHYPA Gamma tubulin OS=Physcomitrella patens subsp. patens |
Align length |
173 |
Score (bit) |
355.0 |
E-value |
2.0e-96 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956160|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_A07, 5' (653 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TMJ1|A9TMJ1_PHYPA Gamma tubulin OS=Physcomitrella patens su... 355 2e-96 tr|A9THV1|A9THV1_PHYPA Gamma tubulin OS=Physcomitrella patens su... 355 2e-96 tr|Q8LKL1|Q8LKL1_9MARC Tubulin gamma chain OS=Conocephalum japon... 354 2e-96 tr|Q7XJC1|Q7XJC1_9MARC Gamma-tubulin OS=Haplomitrium mnioides GN... 353 7e-96 tr|A7PZS0|A7PZS0_VITVI Chromosome chr15 scaffold_40, whole genom... 350 6e-95 tr|A5BTA6|A5BTA6_VITVI Putative uncharacterized protein OS=Vitis... 350 6e-95 tr|Q9LEC3|Q9LEC3_TOBAC Gamma tubulin (Fragment) OS=Nicotiana tab... 348 1e-94 tr|Q8GZT0|Q8GZT0_LUPAL Gamma-tubulin OS=Lupinus albus GN=TubG1 P... 348 2e-94 tr|Q9FRU9|Q9FRU9_TOBAC Gamma-tubulin1 OS=Nicotiana tabacum GN=nt... 347 4e-94 tr|Q0DKL1|Q0DKL1_ORYSJ Os05g0156600 protein OS=Oryza sativa subs... 346 6e-94 tr|B8AYG1|B8AYG1_ORYSI Putative uncharacterized protein OS=Oryza... 346 6e-94 tr|Q9M421|Q9M421_HORVU Gamma tubulin OS=Hordeum vulgare GN=gtub ... 341 2e-92 tr|Q1HMQ7|Q1HMQ7_TOBAC Gamma-tubulin (Fragment) OS=Nicotiana tab... 330 5e-89 tr|B6M8R2|B6M8R2_BRAFL Putative uncharacterized protein OS=Branc... 307 4e-82 tr|Q4QQZ8|Q4QQZ8_XENLA Xgam protein OS=Xenopus laevis GN=tubg1 P... 306 5e-82 tr|Q0P4Q5|Q0P4Q5_XENTR Tubulin, gamma 1 OS=Xenopus tropicalis GN... 306 5e-82 tr|Q7ZVM5|Q7ZVM5_DANRE Tubulin, gamma-like OS=Danio rerio GN=tub... 306 9e-82 tr|B0JZL0|B0JZL0_DANRE Tubgl protein OS=Danio rerio GN=tubgl PE=... 306 9e-82 tr|Q9GYY8|Q9GYY8_STRPU Gamma tubulin 2 OS=Strongylocentrotus pur... 306 9e-82 tr|Q5PQ98|Q5PQ98_XENLA LOC495938 protein OS=Xenopus laevis GN=LO... 305 2e-81 tr|Q6F4J1|Q6F4J1_MOUSE Gamma-tubulin1 OS=Mus musculus GN=Tubg1 P... 305 2e-81 tr|Q53X79|Q53X79_HUMAN TUBG1 protein (Fragment) OS=Homo sapiens ... 304 3e-81 tr|O00896|O00896_PHYPO Gamma-tubulin OS=Physarum polycephalum PE... 303 5e-81 tr|B3RKE6|B3RKE6_TRIAD Putative uncharacterized protein OS=Trich... 303 5e-81 tr|B2NIZ0|B2NIZ0_PHAAN Gamma-tubulin (Fragment) OS=Phaseolus ang... 303 6e-81 tr|Q6F4J0|Q6F4J0_MOUSE Gamma-tubulin2 OS=Mus musculus GN=Tubg2 P... 301 2e-80 tr|A7SSE3|A7SSE3_NEMVE Predicted protein OS=Nematostella vectens... 300 7e-80 tr|Q9AR10|Q9AR10_EUGGR Gamma-tubulin OS=Euglena gracilis PE=2 SV=1 296 7e-79 tr|B4PAI2|B4PAI2_DROYA GE12662 OS=Drosophila yakuba GN=GE12662 P... 296 7e-79 tr|B4Q9H8|B4Q9H8_DROSI GD21771 OS=Drosophila simulans GN=GD21771... 295 1e-78
>tr|A9TMJ1|A9TMJ1_PHYPA Gamma tubulin OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170860 PE=3 SV=1 Length = 486
Score = 355 bits (910), Expect = 2e-96 Identities = 168/173 (97%), Positives = 172/173 (99%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISK+G+LEDFATQGGDRKDVFFYQADDEHY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALL+DLEPRVIN IQNSEY+NLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD Sbjct: 61 IPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 173
>tr|A9THV1|A9THV1_PHYPA Gamma tubulin OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170153 PE=3 SV=1 Length = 475
Score = 355 bits (910), Expect = 2e-96 Identities = 168/173 (97%), Positives = 172/173 (99%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISK+G+LEDFATQGGDRKDVFFYQADDEHY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALL+DLEPRVIN IQNSEY+NLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD Sbjct: 61 IPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 173
>tr|Q8LKL1|Q8LKL1_9MARC Tubulin gamma chain OS=Conocephalum japonicum GN=gtb1 PE=3 SV=1 Length = 475
Score = 354 bits (909), Expect = 2e-96 Identities = 169/173 (97%), Positives = 171/173 (98%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISK G+LEDFATQGGDRKDVFFYQADDEHY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKAGILEDFATQGGDRKDVFFYQADDEHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALLLDLEPRVIN IQNSEY+NLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD Sbjct: 61 IPRALLLDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 173
>tr|Q7XJC1|Q7XJC1_9MARC Gamma-tubulin OS=Haplomitrium mnioides GN=gtb1 PE=3 SV=1 Length = 475
Score = 353 bits (905), Expect = 7e-96 Identities = 168/173 (97%), Positives = 171/173 (98%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISK G+LEDFATQGGDRKDVFFYQADDEHY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKAGILEDFATQGGDRKDVFFYQADDEHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALLLDLEPRVIN IQNSEY+NLYNHENVFVA+HGGGAGNNWASGYHQGEQVEEDIMD Sbjct: 61 IPRALLLDLEPRVINSIQNSEYRNLYNHENVFVAEHGGGAGNNWASGYHQGEQVEEDIMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 173
>tr|A7PZS0|A7PZS0_VITVI Chromosome chr15 scaffold_40, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026983001 PE=3 SV=1 Length = 473
Score = 350 bits (897), Expect = 6e-95 Identities = 164/173 (94%), Positives = 171/173 (98%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEG+LEDFATQGGDRKDVFFYQADD+HY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALL+DLEPRVINGIQNSEY+NLYNHEN+FV+DHGGGAGNNWASGYHQG+ VEEDIMD Sbjct: 61 IPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASGYHQGKGVEEDIMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFP 173
>tr|A5BTA6|A5BTA6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014578 PE=3 SV=1 Length = 492
Score = 350 bits (897), Expect = 6e-95 Identities = 164/173 (94%), Positives = 171/173 (98%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEG+LEDFATQGGDRKDVFFYQADD+HY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALL+DLEPRVINGIQNSEY+NLYNHEN+FV+DHGGGAGNNWASGYHQG+ VEEDIMD Sbjct: 61 IPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASGYHQGKGVEEDIMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFP 173
>tr|Q9LEC3|Q9LEC3_TOBAC Gamma tubulin (Fragment) OS=Nicotiana tabacum GN=gtub PE=2 SV=1 Length = 474
Score = 348 bits (894), Expect = 1e-94 Identities = 162/173 (93%), Positives = 170/173 (98%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEG+LEDFATQGGDRKDVFFYQADD+HY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALL+DLEPRVINGIQN EY+NLYNHENVF+ADHGGGAGNNWASGYHQG+Q EED+MD Sbjct: 61 IPRALLMDLEPRVINGIQNGEYRNLYNHENVFIADHGGGAGNNWASGYHQGKQYEEDLMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSY+LE LNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYILETLNDRYSKKLVQTYSVFP 173
>tr|Q8GZT0|Q8GZT0_LUPAL Gamma-tubulin OS=Lupinus albus GN=TubG1 PE=3 SV=1 Length = 472
Score = 348 bits (893), Expect = 2e-94 Identities = 163/173 (94%), Positives = 170/173 (98%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEG+LEDFATQGGDRKDVFFYQADD+HY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALL+DLEPRVINGIQN EY+NLYNHENVF++DHGGGAGNNWASGYHQG+ VEEDIMD Sbjct: 61 IPRALLIDLEPRVINGIQNGEYRNLYNHENVFLSDHGGGAGNNWASGYHQGKNVEEDIMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFP 173
>tr|Q9FRU9|Q9FRU9_TOBAC Gamma-tubulin1 OS=Nicotiana tabacum GN=nttug1 PE=2 SV=1 Length = 474
Score = 347 bits (890), Expect = 4e-94 Identities = 161/173 (93%), Positives = 170/173 (98%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIITLQVGQCGNQIGMEFWK+LCLEHGISKEG+LEDFATQGGDRKDVFFYQADD+HY Sbjct: 1 MPREIITLQVGQCGNQIGMEFWKRLCLEHGISKEGILEDFATQGGDRKDVFFYQADDQHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALL+DLEPRVINGIQN EY+NLYNHENVF+ADHGGGAGNNWASGYHQG+Q EED+MD Sbjct: 61 IPRALLMDLEPRVINGIQNGEYRNLYNHENVFIADHGGGAGNNWASGYHQGKQYEEDLMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSY+LE LNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYILETLNDRYSKKLVQTYSVFP 173
>tr|Q0DKL1|Q0DKL1_ORYSJ Os05g0156600 protein OS=Oryza sativa subsp. japonica GN=Os05g0156600 PE=2 SV=1 Length = 469
Score = 346 bits (888), Expect = 6e-94 Identities = 161/173 (93%), Positives = 170/173 (98%) Frame = +2
Query: 134 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGGDRKDVFFYQADDEHY 313 MPREIIT+QVGQCGNQIGMEFWKQLCLEHGI K+G+LEDFATQGGDRKDVFFYQADD+HY Sbjct: 1 MPREIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGGDRKDVFFYQADDQHY 60
Query: 314 IPRALLLDLEPRVINGIQNSEYKNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMD 493 IPRALL+DLEPRVINGIQNSEY+NLYNHEN+FVA+HGGGAGNNWASGYHQGEQV +DIMD Sbjct: 61 IPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQGEQVVDDIMD 120
Query: 494 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFP 652 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDRYSKKLVQTYSVFP Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFP 173
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