DK955992 |
Clone id |
TST39A01NGRL0024_J05 |
Library |
TST39 |
Length |
585 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_J05. 5' end sequence. |
Accession |
DK955992 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3061Contig1 |
Sequence |
TACGCACTGAAGTGTTGCCATAACCTCAAAACCCCAGATCCAAGCTTCGTCGTCTCCTTC TTTGAAGCTGGGCCAAGAGCTGGGCACACCGTTGTGGTTCTGATCTGTGCAGCGATCAAG TTCTACCATGGGAGCTTCCACATTCGTTATCATTATAATCTTTGTTTTGGACTTGATTGC ATTCGGGCTGGGCATTGGAGCTGAACAGAGGCGTGCTGAAGGAAAGTACGTGACAGATGA TCCTTCAGACTACCAGTGGTGTCAATATTCTTCGGACATTGCGACAGGTTTGGCTACTGG AGCTTTGCTGTTCCTTTTGACAAGTCAGGTGTTGGTCCTTGGAGCTACTCGTTGTCTTTG CTGTGGAAACTCCTTGAAACCGGGTGCAGCACGTGCTTTTGCTGTCATCTTCTTCATTCT CAACTGGTTATCGTTCTTGGTGGCTGAAATTTGTTTCTTGGCGGGTGCAGTGCAGAATGC CAAGCACATTCGTTACTTTTCTAGCATACAGGTGACCTAGCAAGCCCACATGCTCTGCTA TCCCGGAAGGATACTTTTGCTGCTGGTGTAGCATTCACTTTTCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O76011 |
Definition |
sp|O76011|KRT34_HUMAN Keratin, type I cuticular Ha4 OS=Homo sapiens |
Align length |
122 |
Score (bit) |
35.8 |
E-value |
0.16 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NNH9 |
Definition |
tr|A9NNH9|A9NNH9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
128 |
Score (bit) |
112.0 |
E-value |
1.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955992|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_J05, 5' (585 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NNH9|A9NNH9_PICSI Putative uncharacterized protein OS=Picea... 112 1e-23 tr|A7P1I7|A7P1I7_VITVI Chromosome chr19 scaffold_4, whole genome... 104 3e-21 tr|B6T362|B6T362_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 100 8e-21 tr|B6TT59|B6TT59_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 95 2e-20 tr|A9NS70|A9NS70_PICSI Putative uncharacterized protein OS=Picea... 102 2e-20 tr|B6UFS5|B6UFS5_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 100 6e-20 tr|Q6Z3C2|Q6Z3C2_ORYSJ Os07g0462200 protein OS=Oryza sativa subs... 95 3e-19 tr|Q940M6|Q940M6_ARATH At4g27438 (At4g27438/At4g27438) OS=Arabid... 97 4e-19 tr|Q9LDK1|Q9LDK1_ARATH Gb|AAF30339.1 (AT3g15480/MJK13_14) (Putat... 96 4e-19 tr|Q9C930|Q9C930_ARATH Putative uncharacterized protein F14G24.1... 97 7e-19 tr|Q6T7D3|Q6T7D3_GOSBA Fiber protein Fb34 OS=Gossypium barbadens... 97 7e-19 tr|A9NLP2|A9NLP2_PICSI Putative uncharacterized protein OS=Picea... 96 9e-19 tr|A9P8A6|A9P8A6_POPTR Putative uncharacterized protein OS=Popul... 95 3e-18 tr|A9PDK5|A9PDK5_POPTR Putative uncharacterized protein OS=Popul... 93 8e-18 tr|Q7XKA9|Q7XKA9_ORYSJ Os04g0678200 protein OS=Oryza sativa subs... 87 8e-18 tr|Q259E5|Q259E5_ORYSA H0801D08.4 protein (H0402C08.14 protein) ... 87 8e-18 tr|A2XYZ8|A2XYZ8_ORYSI Putative uncharacterized protein OS=Oryza... 87 8e-18 tr|Q9FX59|Q9FX59_ARATH T6J4.13 protein (Expressed protein) (Puta... 92 2e-17 tr|A7QYP9|A7QYP9_VITVI Chromosome undetermined scaffold_252, who... 92 2e-17 tr|A7P384|A7P384_VITVI Chromosome chr1 scaffold_5, whole genome ... 91 6e-17 tr|Q8H8J9|Q8H8J9_ORYSJ Os10g0495900 protein OS=Oryza sativa subs... 89 1e-16 tr|A2Z8Y1|A2Z8Y1_ORYSI Putative uncharacterized protein OS=Oryza... 89 1e-16 tr|B6TXE3|B6TXE3_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 89 2e-16 tr|B4FVT6|B4FVT6_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 89 2e-16 tr|B6UF79|B6UF79_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 87 5e-16 tr|Q6H422|Q6H422_ORYSJ Os09g0281300 protein OS=Oryza sativa subs... 84 4e-15 tr|B8BGD1|B8BGD1_ORYSI Putative uncharacterized protein OS=Oryza... 84 4e-15 tr|Q8W576|Q8W576_ARATH Putative uncharacterized protein (At1g610... 84 6e-15 tr|Q8LCJ0|Q8LCJ0_ARATH Putative uncharacterized protein OS=Arabi... 84 6e-15 tr|B7FH32|B7FH32_MEDTR Putative uncharacterized protein OS=Medic... 84 8e-15
>tr|A9NNH9|A9NNH9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 189
Score = 112 bits (281), Expect = 1e-23 Identities = 56/128 (43%), Positives = 70/128 (54%) Frame = +2
Query: 134 ASTXXXXXXXXXXXXAFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXX 313 AST AFGL + AEQRR+ K V D S+Y +C Y SDI Sbjct: 6 ASTLLLIIVFILDVIAFGLAVAAEQRRSTAKVVPDPNSEYTYCVYDSDIATGYGVGAFLF 65
Query: 314 XXXXXXXXXGATRCLCCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIR 493 GATRCLCCG SL+PG +RA A++ FI WL+F++AE CF+ GA +NA H + Sbjct: 66 LFVSQALIMGATRCLCCGRSLRPGGSRASAIVLFIATWLTFIIAEACFVGGAARNAYHTK 125
Query: 494 YFSSIQVT 517 Y QVT Sbjct: 126 YRGFYQVT 133
>tr|A7P1I7|A7P1I7_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027631001 PE=4 SV=1 Length = 185
Score = 104 bits (260), Expect = 3e-21 Identities = 52/121 (42%), Positives = 68/121 (56%) Frame = +2
Query: 134 ASTXXXXXXXXXXXXAFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXX 313 AST AFGL + AEQRR+ + VTD +Y++C Y SDI Sbjct: 2 ASTVILVVVLIFDVIAFGLAVAAEQRRSTAQVVTDSEDNYKYCVYDSDISTGLGVGALLF 61
Query: 314 XXXXXXXXXGATRCLCCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIR 493 A+RC CCG +L PG +RA+AVI FI W++FL+AEIC LAG+V+NA H + Sbjct: 62 LFASQAIIMVASRCFCCGKALNPGGSRAWAVILFITCWVTFLIAEICLLAGSVRNAYHTK 121
Query: 494 Y 496 Y Sbjct: 122 Y 122
>tr|B6T362|B6T362_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 Length = 182
Score = 100 bits (249), Expect(2) = 8e-21 Identities = 47/106 (44%), Positives = 60/106 (56%) Frame = +2
Query: 179 AFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXXXXXXXXXXXGATRCL 358 AFGLG+ AEQRR+ D +Y +C Y SDI A+RC Sbjct: 17 AFGLGVAAEQRRSRATVTPDAAKEYDYCVYDSDIATGYGVGALLLLAAAQVVLMLASRCF 76
Query: 359 CCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIRY 496 CCG LKPG +RA A+I F+ W++FL+AE C LAG+V+NA H RY Sbjct: 77 CCGRGLKPGGSRACALILFLFTWVTFLIAEACLLAGSVRNAYHTRY 122
Score = 23.9 bits (50), Expect(2) = 8e-21 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = +1
Query: 544 RKDTFAAGVAFTF 582 RK FAAG AFTF Sbjct: 137 RKGVFAAGAAFTF 149
>tr|B6TT59|B6TT59_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 Length = 183
Score = 94.7 bits (234), Expect(2) = 2e-20 Identities = 47/107 (43%), Positives = 64/107 (59%) Frame = +2
Query: 179 AFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXXXXXXXXXXXGATRCL 358 AF L IGAE+RR+ YV+ DP+ +C YSSD ATRC Sbjct: 17 AFVLAIGAERRRSYVNYVSVDPAGGSYCVYSSDASTAYGVSALLLLLAAQAVAMVATRCF 76
Query: 359 CCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIRYF 499 CCG +L PG RA++ I FI+ W++F++AE+C LAG+V+NA H +YF Sbjct: 77 CCGRALSPGRWRAWSGICFIVCWVTFVIAELCLLAGSVRNAYHTKYF 123
Score = 28.5 bits (62), Expect(2) = 2e-20 Identities = 16/25 (64%), Positives = 17/25 (68%) Frame = +1
Query: 511 GDLASPHALLSRKDTFAAGVAFTFL 585 GD P A+L RK FAAG AFTFL Sbjct: 126 GDGPPPCAML-RKGVFAAGAAFTFL 149
>tr|A9NS70|A9NS70_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 190
Score = 102 bits (253), Expect = 2e-20 Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Frame = +2
Query: 179 AFGLGIGAEQRRAEGKYVTD-DPSDYQWCQYSSDIXXXXXXXXXXXXXXXXXXXXGATRC 355 AFG + AE+RR+ G+ V + + D +C Y SDI G T+C Sbjct: 21 AFGFAVAAERRRSTGRVVPEPNEVDVTYCVYKSDIATGYGVGAFLFLLLAEALIMGVTKC 80
Query: 356 LCCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIRYFSSIQV 514 LCCG+SL PG +RA+A+I+F+ +WL+FL+AE C +AGAV+NA H +Y +S+ + Sbjct: 81 LCCGSSLTPGGSRAWAIIYFLSSWLTFLIAETCLMAGAVRNAHHTKYRNSLHI 133
>tr|B6UFS5|B6UFS5_MAIZE Fiber protein Fb34 OS=Zea mays PE=2 SV=1 Length = 182
Score = 100 bits (249), Expect = 6e-20 Identities = 47/106 (44%), Positives = 60/106 (56%) Frame = +2
Query: 179 AFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXXXXXXXXXXXGATRCL 358 AFGLG+ AEQRR+ D +Y +C Y SDI A+RC Sbjct: 17 AFGLGVAAEQRRSRATVTPDAAKEYDYCVYDSDIATGYGVGALLLLAAAQVVLMLASRCF 76
Query: 359 CCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIRY 496 CCG LKPG +RA A+I F+ W++FL+AE C LAG+V+NA H RY Sbjct: 77 CCGRGLKPGGSRACALILFLFTWVTFLIAEACLLAGSVRNAYHTRY 122
>tr|Q6Z3C2|Q6Z3C2_ORYSJ Os07g0462200 protein OS=Oryza sativa subsp. japonica GN=P0038F09.45 PE=2 SV=1 Length = 185
Score = 95.1 bits (235), Expect(2) = 3e-19 Identities = 44/106 (41%), Positives = 59/106 (55%) Frame = +2
Query: 179 AFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXXXXXXXXXXXGATRCL 358 AFGL + AEQRR++ D Y +C Y SDI A++C Sbjct: 17 AFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIATGYGVGALLLLAAAQAVVMLASKCF 76
Query: 359 CCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIRY 496 CCG LKPG +RA A+I F+ WL+FL+AE C +AG+++NA H RY Sbjct: 77 CCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHTRY 122
Score = 23.9 bits (50), Expect(2) = 3e-19 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = +1
Query: 544 RKDTFAAGVAFTF 582 RK FAAG AFTF Sbjct: 137 RKGVFAAGAAFTF 149
>tr|Q940M6|Q940M6_ARATH At4g27438 (At4g27438/At4g27438) OS=Arabidopsis thaliana GN=At4g27435 PE=2 SV=1 Length = 173
Score = 97.4 bits (241), Expect(2) = 4e-19 Identities = 46/106 (43%), Positives = 60/106 (56%) Frame = +2
Query: 179 AFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXXXXXXXXXXXGATRCL 358 AFGL + AEQRR+ + V D Y +C Y SD +RC Sbjct: 17 AFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFLFSVASQILIMLVSRCF 76
Query: 359 CCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIRY 496 CCG LKPG +RA A+I FI++W+ FL+AEIC LAG+V+NA H +Y Sbjct: 77 CCGKPLKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHTKY 122
Score = 21.2 bits (43), Expect(2) = 4e-19 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = +1
Query: 526 PHALLSRKDTFAAGVAFTF 582 P RK FAAG +F F Sbjct: 131 PDCQTLRKGVFAAGASFVF 149
>tr|Q9LDK1|Q9LDK1_ARATH Gb|AAF30339.1 (AT3g15480/MJK13_14) (Putative uncharacterized protein) (MJK13.14 protein) OS=Arabidopsis thaliana GN=MJK13.14 PE=2 SV=1 Length = 175
Score = 96.3 bits (238), Expect(2) = 4e-19 Identities = 45/106 (42%), Positives = 60/106 (56%) Frame = +2
Query: 179 AFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXXXXXXXXXXXGATRCL 358 A GL I AEQRR+ GK TD Y +C Y +DI A+RC Sbjct: 17 AVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFVLLFVSQVLIMAASRCF 76
Query: 359 CCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIRY 496 CCG SL PG +RA A+I F++ W+ FL+AE+C LA +++NA H +Y Sbjct: 77 CCGKSLNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHTQY 122
Score = 22.3 bits (46), Expect(2) = 4e-19 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +1
Query: 526 PHALLSRKDTFAAGVAFT 579 P + RK FAAG AFT Sbjct: 132 PSCEVIRKGVFAAGAAFT 149
>tr|Q9C930|Q9C930_ARATH Putative uncharacterized protein F14G24.18 (Putative uncharacterized protein At1g52910) (At1g52910) OS=Arabidopsis thaliana GN=At1g52910 PE=2 SV=1 Length = 175
Score = 97.1 bits (240), Expect = 7e-19 Identities = 44/106 (41%), Positives = 62/106 (58%) Frame = +2
Query: 179 AFGLGIGAEQRRAEGKYVTDDPSDYQWCQYSSDIXXXXXXXXXXXXXXXXXXXXGATRCL 358 A GL I AEQRR+ GK V D +++ C+Y SDI A+RC Sbjct: 17 AVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFVLLFISQVIIMVASRCF 76
Query: 359 CCGNSLKPGAARAFAVIFFILNWLSFLVAEICFLAGAVQNAKHIRY 496 CCG +LKPG +RA ++ F++ W+ FL+AE+C LAG+++NA H Y Sbjct: 77 CCGKALKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHTTY 122
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