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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955911
Clone id TST39A01NGRL0024_F20
Library
Length 212
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0024_F20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCTCATTCCTGTGGTGCGCGATGGCATTCTTTGGTCTGCCCAGCAAAATATGGCGGGGGA
TTCTGCGAGCAACAAACGATGGAGATGGTGGATTCCCTCTGCTATGGTGGGCGCTTGCGC
TCATCTCATGTCTGGCATCATGGATGCTGGCTTCTCTCCTCATGAATGCTCGACTCGGAA
GATCCCCACACTTTCCTCCAGTTGTGCCTGGA
■■Homology search results ■■ -
sp_hit_id Q8VHS2
Definition sp|Q8VHS2|CRUM1_MOUSE Crumbs homolog 1 OS=Mus musculus
Align length 39
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955911|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_F20, 5'
         (212 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VHS2|CRUM1_MOUSE Crumbs homolog 1 OS=Mus musculus GN=Crb1 P...    31   1.7  
sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=...    31   2.2  
sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 O...    30   2.9  
sp|P82279|CRUM1_HUMAN Crumbs homolog 1 OS=Homo sapiens GN=CRB1 P...    30   2.9  
sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 O...    30   4.9  
sp|Q9QYP0|MEGF8_RAT Multiple epidermal growth factor-like domain...    30   4.9  
sp|Q7Z7M0|MEGF8_HUMAN Multiple epidermal growth factor-like doma...    30   4.9  
sp|Q9JI71|DLL4_MOUSE Delta-like protein 4 OS=Mus musculus GN=Dll...    30   4.9  
sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protei...    29   6.4  
sp|O15245|S22A1_HUMAN Solute carrier family 22 member 1 OS=Homo ...    29   6.4  
sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 O...    29   6.4  
sp|Q9Y219|JAG2_HUMAN Protein jagged-2 OS=Homo sapiens GN=JAG2 PE...    29   6.4  
sp|Q9NR61|DLL4_HUMAN Delta-like protein 4 OS=Homo sapiens GN=DLL...    29   6.4  
sp|P21783|NOTCH_XENLA Neurogenic locus notch protein homolog OS=...    29   8.3  
sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2    29   8.3  

>sp|Q8VHS2|CRUM1_MOUSE Crumbs homolog 1 OS=Mus musculus GN=Crb1 PE=1
           SV=2
          Length = 1405

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 34  VCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVWHHGCW 150
           +CP  Y G FCE    E   S C+ G +    +  + C+
Sbjct: 134 ICPPGYAGRFCETDHNECASSPCHNGAMCQDGINGYSCF 172


>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2
            OS=Rattus norvegicus GN=Notch2 PE=1 SV=1
          Length = 2471

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 25   HSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVWHHGC 147
            H   CP  Y G +CE+Q  E   + C  G   S  +  + C
Sbjct: 1133 HHCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRC 1173


>sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2
            OS=Homo sapiens GN=NOTCH2 PE=1 SV=3
          Length = 2471

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 25   HSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVWHHGC 147
            H   CP  Y G +CE+Q  E   + C  G   S  +  + C
Sbjct: 1133 HYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRC 1173


>sp|P82279|CRUM1_HUMAN Crumbs homolog 1 OS=Homo sapiens GN=CRB1 PE=1
           SV=2
          Length = 1406

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 34  VCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVWHHGCW 150
           +CPA Y G FCE    E   S C  G +    +  + C+
Sbjct: 135 ICPAGYAGRFCEIDHDECASSPCQNGAVCQDGIDGYSCF 173


>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus
            musculus GN=Notch2 PE=1 SV=1
          Length = 2470

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 25   HSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVWHHGC 147
            H   CP  Y G +CE+Q  E   + C  G   +  +  + C
Sbjct: 1131 HHCQCPLGYTGSYCEEQLDECASNPCQHGATCNDFIGGYRC 1171


>sp|Q9QYP0|MEGF8_RAT Multiple epidermal growth factor-like domains 8
            OS=Rattus norvegicus GN=Megf8 PE=2 SV=2
          Length = 2788

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 13   GARWHSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVWHHG 144
            GAR H L+C     G  CEQ     V S   GG  R  H +  G
Sbjct: 2208 GARDHCLLCRNHTKGSHCEQCLPLFVGSALGGGTCRPCHAFCRG 2251


>sp|Q7Z7M0|MEGF8_HUMAN Multiple epidermal growth factor-like domains 8
            OS=Homo sapiens GN=MEGF8 PE=1 SV=2
          Length = 2845

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 13   GARWHSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVWHHG 144
            GAR H L+C     G  CEQ     V S   GG  R  H +  G
Sbjct: 2265 GARDHCLLCRNHTKGSHCEQCLPLFVGSAVGGGTCRPCHAFCRG 2308


>sp|Q9JI71|DLL4_MOUSE Delta-like protein 4 OS=Mus musculus GN=Dll4
           PE=2 SV=1
          Length = 686

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 34  VCPAKYGGGFCEQQTMEMVDSLCYGG 111
           +CP  Y G  CE  T+   DS C+ G
Sbjct: 350 LCPPGYYGQHCEHSTLTCADSPCFNG 375


>sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D
            OS=Homo sapiens GN=VPS13D PE=1 SV=1
          Length = 4387

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 114  APTIAEGIHHLHRLLLAESPAIFCWADQRMPSRTT 10
            A T A G    H L  + SP +FC+AD+  P+  T
Sbjct: 3300 AKTDAAGQFEEHELARSLSPLLFCYADKEQPNLCT 3334


>sp|O15245|S22A1_HUMAN Solute carrier family 22 member 1 OS=Homo
           sapiens GN=SLC22A1 PE=1 SV=1
          Length = 554

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 56  GDSASNKRWRWWIPSAMVGACAHLMSGIMDAGFSP-HECSTRKIPTLSSSCAW 211
           G+S   ++  + I   +  A A +  GI+  GF+P H C +  +  LS  C W
Sbjct: 12  GESGWFQKQAFLILCLLSAAFAPICVGIVFLGFTPDHHCQSPGVAELSQRCGW 64
tr_hit_id A8NK03
Definition tr|A8NK03|A8NK03_BRUMA Metalloprotease 1, putative OS=Brugia malayi
Align length 37
Score (bit) 36.2
E-value 0.86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955911|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0024_F20, 5'
         (212 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NK03|A8NK03_BRUMA Metalloprotease 1, putative OS=Brugia mal...    36   0.86 
tr|A3P5A7|A3P5A7_BURP0 Amino acid permease OS=Burkholderia pseud...    34   3.3  
tr|B5INM6|B5INM6_9CHRO Na+-dependent transporter of the SNF fami...    34   4.3  
tr|Q7UF65|Q7UF65_RHOBA Putative uncharacterized protein OS=Rhodo...    33   5.6  
tr|Q7U8C2|Q7U8C2_SYNPX Transporter OS=Synechococcus sp. (strain ...    33   5.6  
tr|B8BWW4|B8BWW4_THAPS Predicted protein OS=Thalassiosira pseudo...    33   5.6  
tr|Q3AI72|Q3AI72_SYNSC Transporter OS=Synechococcus sp. (strain ...    33   9.5  
tr|Q2T220|Q2T220_BURTA Dipeptide ABC transporter, permease prote...    33   9.5  
tr|A3Z7N6|A3Z7N6_9SYNE Transporter OS=Synechococcus sp. RS9917 G...    33   9.5  
tr|B4KD59|B4KD59_DROMO GI24477 OS=Drosophila mojavensis GN=GI244...    33   9.5  

>tr|A8NK03|A8NK03_BRUMA Metalloprotease 1, putative OS=Brugia malayi
           GN=Bm1_04145 PE=4 SV=1
          Length = 468

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 25  HSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLRSSHVW 135
           +S +CP+ YGG +CE++     DS  +GG LR++  W
Sbjct: 330 YSCLCPSGYGGRYCERR----ADSFGWGGNLRATSEW 362


>tr|A3P5A7|A3P5A7_BURP0 Amino acid permease OS=Burkholderia
           pseudomallei (strain 1106a) GN=BURPS1106A_A1483 PE=4
           SV=1
          Length = 173

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 187 GDLPSRAFMRREASIHDARHEMSASAHHSRGNPPSPSFVARRIPRHILLGRPKNA 23
           G  P+RA  RR  ++H  R   SA A   RG P +P FV R + R     +P +A
Sbjct: 79  GSRPARARSRRAGTLHLRRAAASAPAR--RGRPATPRFVTRFVARFSTRKQPLSA 131


>tr|B5INM6|B5INM6_9CHRO Na+-dependent transporter of the SNF family
           protein OS=Cyanobium sp. PCC 7001 GN=CPCC7001_2420 PE=4
           SV=1
          Length = 456

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 48  IWRGILRATNDGDGGFPLLWWALALISCLASWMLASLLMNARLGRSPHFPPVVPG 212
           +W    RA+  G G F LL+  + L+ CL   ++A +++    G +P   P+  G
Sbjct: 40  LWGFAYRASQGGGGAFVLLYLLIVLVVCLPV-LVAEMVLGRSTGHAPLLAPITAG 93


>tr|Q7UF65|Q7UF65_RHOBA Putative uncharacterized protein
            OS=Rhodopirellula baltica GN=RB10314 PE=4 SV=1
          Length = 1073

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 89   WIPSAMVGACAHLMSGIMDAGFSPHECSTRKIPTLSSSCAW 211
            W+  A++    + +   +D  F PH  + R+IPT+ SS  W
Sbjct: 997  WVQLAILDPSTYTIQRYIDGHFEPHVVTDREIPTVQSSMHW 1037


>tr|Q7U8C2|Q7U8C2_SYNPX Transporter OS=Synechococcus sp. (strain
           WH8102) GN=SYNW0699 PE=3 SV=1
          Length = 439

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 48  IWRGILRATNDGDGGFPLLWWALALISCLASWMLASLLMNARLGRSPHFPPVVPG 212
           +W    RA+  G G F LL+  + L+ CL   ++A +++    G SP   PV  G
Sbjct: 26  LWGFAYRASQGGGGAFLLLYLLIVLVVCLPV-LVAEMVLGRSTGSSPLLAPVNAG 79


>tr|B8BWW4|B8BWW4_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_21607 PE=4 SV=1
          Length = 768

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 172 RAFMRREASIHDARHEMSASAHHSRGNPPSPSFVARRIPRHILLGRPKNAIAHH 11
           R   R    I  ARH+ S+SAHH    PPS     +   +  L+ RPK     H
Sbjct: 94  RGRRRTSVEIESARHQQSSSAHHHHSPPPS----QQPSQQQQLVSRPKQRRPRH 143


>tr|Q3AI72|Q3AI72_SYNSC Transporter OS=Synechococcus sp. (strain
           CC9605) GN=Syncc9605_1969 PE=3 SV=1
          Length = 439

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 48  IWRGILRATNDGDGGFPLLWWALALISCLASWMLASLLMNARLGRSPHFPPV 203
           +W    RA+  G G F LL+  + L+ CL   ++A +++    G+SP   PV
Sbjct: 26  LWGFAYRASQGGGGAFLLLYVLIVLLVCLPV-LVAEMVLGRSTGQSPLLAPV 76


>tr|Q2T220|Q2T220_BURTA Dipeptide ABC transporter, permease protein
           OS=Burkholderia thailandensis (strain E264 / ATCC 700388
           / DSM 13276 / CIP 106301) GN=BTH_I0221 PE=3 SV=1
          Length = 336

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
 Frame = +3

Query: 15  CAMAF---FGLPSKIWRGILRATNDGDG---------GFPLLWWALALISCLASWM 146
           CA+AF   FGLP+ ++  + R T    G           P+ WW L LI   +S++
Sbjct: 105 CALAFALAFGLPAGVFAALRRGTIVDHGVMGTALTGYSMPIFWWGLILIMVFSSYL 160


>tr|A3Z7N6|A3Z7N6_9SYNE Transporter OS=Synechococcus sp. RS9917
           GN=RS9917_01462 PE=3 SV=1
          Length = 446

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 48  IWRGILRATNDGDGGFPLLWWALALISCLASWMLASLLMNARLGRSPHFPPV 203
           +W    RA+  G G F LL+  + L+ CL   ++A +++    G SP   PV
Sbjct: 27  LWGFAYRASQGGGGAFLLLYVLIVLVVCLPV-LVAEMVLGRSTGHSPLLAPV 77


>tr|B4KD59|B4KD59_DROMO GI24477 OS=Drosophila mojavensis GN=GI24477
           PE=4 SV=1
          Length = 861

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 19  RWHSLVCPAKYGGGFCEQQTMEMVDSLCYGGRLR--SSH 129
           R +  VCP  + G  CE++ +   D  C+ GR R  SSH
Sbjct: 355 RGYKCVCPKGWNGRMCEEKLLTCADKPCHQGRCRNTSSH 393