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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955739
Clone id TST39A01NGRL0023_O12
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_O12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTTTCGATGCTGCTCGATCGAGCTAGTCATCGCCATAGCTGTGCGTTCCATTCTCATCA
CGAGCATCTCTCCATGCGTGCCGCCACTGCAGGTCACTAGCTTTTCAGGTCTCTTGAGGG
CGGCTGAGCTTGAATTTGTTCTCTGTGGAGCGCGTCACCACGGCTACCTTGCGATACACC
TCCAAGCCCGATATGCCGGGGAAGCGCCCTCGCCCCTTTCTGCGAACGAGCAGTAGACCG
CAGCTGCTCCAGAGCTGCGGTCATGAAAGCCCTCCTCCTCCCTCGCCAGTAGGCGTGAAG
TATGACATGGGAGCTCCGCAGCGTGTCGTTGTTGGCTTTGATGTTAGTGGCGAAGCGAAC
AACACTAAGCCTCACTTCGACCCTTGTGAGAGCCCTAGGTCTGTGTTGGAATCGGATGCA
TTGAGTGATGATGATGATCATCATCTTCGTAGTTCTCCCCCGGCCCCGACCCCAGCTCCA
TCTCCACGCTCTGTTCTTGATAGGTTGTTATCAGGACCGGATTCTCGACCTGCTTACACA
GAAGGGGTTGGTCTA
■■Homology search results ■■ -
sp_hit_id Q56WH4
Definition sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis thaliana
Align length 67
Score (bit) 35.4
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955739|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O12, 5'
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis tha...    35   0.19 
sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella p...    35   0.25 
sp|P05670|Y126_ADE07 Uncharacterized 12.6 kDa early protein OS=H...    35   0.25 
sp|O35141|RASF5_RAT Ras association domain-containing protein 5 ...    33   1.2  
sp|Q5EBH1|RASF5_MOUSE Ras association domain-containing protein ...    33   1.2  
sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus lae...    32   1.6  
sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles g...    32   2.1  
sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus lae...    32   2.1  
sp|A6R7B8|MCA1_AJECN Metacaspase-1 OS=Ajellomyces capsulata (str...    31   3.6  
sp|Q89893|DR2_HHV6U Uncharacterized protein DR2 OS=Human herpesv...    30   6.0  
sp|Q32LQ1|PKHO2_BOVIN Pleckstrin homology domain-containing fami...    30   6.1  
sp|A1CJJ9|YAE1_ASPCL Uncharacterized protein yae1 OS=Aspergillus...    30   7.9  
sp|P54842|MAFB_RAT Transcription factor MafB OS=Rattus norvegicu...    30   7.9  
sp|P54841|MAFB_MOUSE Transcription factor MafB OS=Mus musculus G...    30   7.9  
sp|Q2PFS4|MAFB_MACFA Transcription factor MafB OS=Macaca fascicu...    30   7.9  
sp|Q9Y5Q3|MAFB_HUMAN Transcription factor MafB OS=Homo sapiens G...    30   7.9  
sp|Q8WWW0|RASF5_HUMAN Ras association domain-containing protein ...    30   8.0  
sp|P56975|NRG3_HUMAN Pro-neuregulin-3, membrane-bound isoform OS...    30   8.0  
sp|Q9H6F5|CCD86_HUMAN Coiled-coil domain-containing protein 86 O...    30   8.0  
sp|O35451|ATF6B_MOUSE Cyclic AMP-dependent transcription factor ...    30   8.0  

>sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis
           thaliana GN=HDT2 PE=2 SV=2
          Length = 306

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 181 SKPDMPGKRPRPFLRTSSRPQLLQSC---GHESPPPPSPVGVKYDMGAPQRVVVGFDVSG 351
           SK  + GK+ +P    +S PQ  +     GH + P P+  G K  + A Q    G   SG
Sbjct: 216 SKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 275

Query: 352 EANNTKP 372
             NN KP
Sbjct: 276 GNNNKKP 282


>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella
           patens GN=PP2 PE=2 SV=1
          Length = 421

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 541 LCKQVENPVLITTYQEQSVEMELGSGPGENYEDDDHHHHSMHPIPTQT*GSHKGRSE 371
           +C+  E PVL+   +     + +  GPG NY+DD   H S   + T++   H+  S+
Sbjct: 189 MCQSDEGPVLLKVPKAPKSPISVNPGPGCNYDDDS-EHSSSSTVTTKSHEDHRDSSD 244


>sp|P05670|Y126_ADE07 Uncharacterized 12.6 kDa early protein
           OS=Human adenovirus B serotype 7 PE=4 SV=1
          Length = 114

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = -1

Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSRDLK 103
           AL+     ARS +   A     G GG +QG+R  A HR        +Q+ ++PPSR  K
Sbjct: 45  ALDTASKHARSNRATAAQKEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSRPRK 103


>sp|O35141|RASF5_RAT Ras association domain-containing protein 5
           OS=Rattus norvegicus GN=Rassf5 PE=1 SV=1
          Length = 413

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 199 GKRPRPFLRTSSRPQLLQSCGHESPPPPS 285
           G+RP P L     P+ LQS G   PPPP+
Sbjct: 7   GQRPYPLLLDPEPPRYLQSLGGTEPPPPA 35


>sp|Q5EBH1|RASF5_MOUSE Ras association domain-containing protein 5
           OS=Mus musculus GN=Rassf5 PE=1 SV=1
          Length = 413

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 199 GKRPRPFLRTSSRPQLLQSCGHESPPPPS 285
           G+RP P L     P+ LQS G   PPPP+
Sbjct: 7   GQRPYPLLLDPEPPRYLQSLGGTEPPPPA 35


>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis
           GN=rax-B PE=2 SV=1
          Length = 325

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 178 TSKPDMPGK-RPRPFLRTSSRPQLLQSCGHESPPPPSPVGVKY 303
           T+   +PG   P PF+  +S    LQ  G   PPPP   G  Y
Sbjct: 246 TTPTSLPGSYTPPPFINPASMGHALQPLGAMGPPPPYQCGANY 288


>sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles
           gambiae GN=nkd PE=2 SV=1
          Length = 886

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
 Frame = -3

Query: 517 VLITTYQEQSVEME----LGSGPGE---NYEDDDHHHHS--MHPIPTQT*GSHKGRSEA* 365
           +L+T+ +EQ ++++     GSG G+   +++   HHHH    H  P+    +H G S   
Sbjct: 49  LLLTSDREQMLKVKSSASTGSGTGQTKTSFQHSHHHHHHGHHHQSPSSNGHNHSGTS--- 105

Query: 364 CCSLRH*HQSQQRH 323
                H  Q QQ+H
Sbjct: 106 -----HQQQQQQQH 114


>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis
           GN=rax-A PE=2 SV=1
          Length = 322

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 178 TSKPDMPGK-RPRPFLRTSSRPQLLQSCGHESPPPPSPVGVKY 303
           T+ P +PG   P PF+   S    LQ  G   PPPP   G  +
Sbjct: 246 TTPPSLPGSYTPPPFINPVSVGHALQPLGAMGPPPPYQCGANF 288


>sp|A6R7B8|MCA1_AJECN Metacaspase-1 OS=Ajellomyces capsulata (strain
           NAm1 / WU24) GN=MCA1 PE=3 SV=1
          Length = 356

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 175 YTSKPDMPGKRPRPFLRTSSRPQLLQSCGHESPPPPSPVGVKYDMGAPQ 321
           Y+ +   P     P+  + +      S GH  PPPP    V++  GAPQ
Sbjct: 2   YSGRSGAPPPAHSPYPNSYNHGPPGHSAGHNVPPPPPTQPVQFGHGAPQ 50


>sp|Q89893|DR2_HHV6U Uncharacterized protein DR2 OS=Human
           herpesvirus 6A (strain Uganda-1102) GN=DR2L PE=3 SV=1
          Length = 620

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 26/86 (30%), Positives = 36/86 (41%)
 Frame = -3

Query: 499 QEQSVEMELGSGPGENYEDDDHHHHSMHPIPTQT*GSHKGRSEA*CCSLRH*HQSQQRHA 320
           QE S + + G G G  + DD  H H+      Q  G H+ R +    S RH H  + + A
Sbjct: 351 QESSDDHQRG-GSGRGHRDDGAHRHANDKTEPQQRGEHEERKQT--DSGRHEHAQESQVA 407

Query: 319 AELPCHTSRLLAREEEGFHDRSSGAA 242
                   R     E+G  +RS G A
Sbjct: 408 -------RRDEEETEQGDSERSCGGA 426
tr_hit_id Q3E700
Definition tr|Q3E700|Q3E700_ARATH Uncharacterized protein At5g22650.2 OS=Arabidopsis thaliana
Align length 66
Score (bit) 35.8
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955739|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_O12, 5'
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3E700|Q3E700_ARATH Uncharacterized protein At5g22650.2 OS=Ar...    36   1.6  
tr|Q5AXG0|Q5AXG0_EMENI Predicted protein OS=Emericella nidulans ...    36   1.6  
tr|A9U1I8|A9U1I8_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.7  
tr|Q5EY75|Q5EY75_ADE07 E2B hypothetical 12.6 kDa early protein O...    35   2.7  
tr|Q2KSC4|Q2KSC4_9ADEN Hypothetical 12.6 kDa protein OS=Human ad...    35   2.7  
tr|Q2KRX9|Q2KRX9_ADE16 Hypothetical 12.6 kDa early protein OS=Hu...    35   2.7  
tr|B7Z562|B7Z562_HUMAN cDNA FLJ59041 OS=Homo sapiens PE=2 SV=1         27   2.7  
tr|B7FRG5|B7FRG5_PHATR Predicted protein OS=Phaeodactylum tricor...    35   3.5  
tr|Q2KSK5|Q2KSK5_ADE03 Hypothetical 12.6 kDa protein OS=Human ad...    34   4.6  
tr|Q3JGC1|Q3JGC1_BURP1 Acetyltransferase, GNAT family OS=Burkhol...    34   4.6  
tr|B7CGK3|B7CGK3_BURPS Acetyltransferase, GNAT family OS=Burkhol...    34   4.6  
tr|A8KQM5|A8KQM5_BURPS Acetyltransferase, GNAT family OS=Burkhol...    34   4.6  
tr|B4JPI4|B4JPI4_DROGR GH13525 OS=Drosophila grimshawi GN=GH1352...    34   6.0  
tr|Q2KG94|Q2KG94_MAGGR Putative uncharacterized protein OS=Magna...    34   6.0  
tr|Q2VNJ5|Q2VNJ5_METAI Chromosomal replication initiator protein...    34   6.1  
tr|A3U0E3|A3U0E3_9RHOB Amidase OS=Oceanicola batsensis HTCC2597 ...    34   6.1  
tr|Q1LL85|Q1LL85_RALME UspA OS=Ralstonia metallidurans (strain C...    33   7.8  
tr|Q9XEK5|Q9XEK5_CHLRE Gamete-specific homeodomain protein GSP1 ...    33   7.8  
tr|A8I3J2|A8I3J2_CHLRE Gamete-specific transcription factor OS=C...    33   7.8  
tr|B1G982|B1G982_9BURK Putative uncharacterized protein OS=Burkh...    33   7.9  
tr|Q6NRK0|Q6NRK0_XENLA MGC83760 protein OS=Xenopus laevis GN=asa...    28   8.7  

>tr|Q3E700|Q3E700_ARATH Uncharacterized protein At5g22650.2
           OS=Arabidopsis thaliana GN=At5g22650 PE=4 SV=2
          Length = 305

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 181 SKPDMPGKRPRPFLRTSSRPQLLQSC--GHESPPPPSPVGVKYDMGAPQRVVVGFDVSGE 354
           SK  + GK+ +P    +S PQ  +    GH + P P+  G K  + A Q    G   SG 
Sbjct: 216 SKTPVSGKKAKPAAAPASTPQKTEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSGG 275

Query: 355 ANNTKP 372
            NN KP
Sbjct: 276 NNNKKP 281


>tr|Q5AXG0|Q5AXG0_EMENI Predicted protein OS=Emericella nidulans
           GN=AN7020.2 PE=4 SV=1
          Length = 146

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = -1

Query: 435 IIITQCIRFQHRPRALTRVEVRLSVVRFAT--NIKANNDTLRSSHVILHAYWRGRRRAFM 262
           I+I   ++ Q    A+  + +RL +V      NI AN DT++     ++A+      AF 
Sbjct: 25  IMIIPIVQLQDVLCAMLSLSMRLGIVVCVDMGNISANGDTVQLIQKRINAFRLHDELAF- 83

Query: 261 TAALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHREQIQAQPPSRDLKS 100
             +L  L+   +     R+    +GLG VSQ +R D LH     +QP S+ L S
Sbjct: 84  -GSLVHLQKKFKQAGTVRSNQILLGLG-VSQLARTDVLHCADADSQPQSKYLSS 135


>tr|A9U1I8|A9U1I8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100368 PE=4 SV=1
          Length = 421

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 541 LCKQVENPVLITTYQEQSVEMELGSGPGENYEDDDHHHHSMHPIPTQT*GSHKGRSE 371
           +C+  E PVL+   +     + +  GPG NY+DD   H S   + T++   H+  S+
Sbjct: 189 MCQSDEGPVLLKVPKAPKSPISVNPGPGCNYDDDS-EHSSSSTVTTKSHEDHRDSSD 244


>tr|Q5EY75|Q5EY75_ADE07 E2B hypothetical 12.6 kDa early protein
           OS=Human adenovirus B serotype 7 GN=E2B PE=4 SV=1
          Length = 114

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = -1

Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSRDLK 103
           AL+     ARS +   A     G GG +QG+R  A HR        +Q+ ++PPSR  K
Sbjct: 45  ALDTASKHARSNRATAAQKEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSRPRK 103


>tr|Q2KSC4|Q2KSC4_9ADEN Hypothetical 12.6 kDa protein OS=Human
           adenovirus 21 PE=4 SV=1
          Length = 114

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = -1

Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSRDLK 103
           AL+     ARS +   A     G GG +QG+R  A HR        +Q+ ++PPSR  K
Sbjct: 45  ALDTASKHARSNRATAAQKEKQGHGGSTQGARNPASHRHLHQRTRGDQVPSEPPSRPRK 103


>tr|Q2KRX9|Q2KRX9_ADE16 Hypothetical 12.6 kDa early protein OS=Human
           adenovirus B serotype 16 PE=4 SV=1
          Length = 114

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = -1

Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSRDLK 103
           AL+     ARS +   A     G GG +QG+R  A HR        +Q+ ++PPSR  K
Sbjct: 45  ALDTASKHARSNRATAAQTEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSRPRK 103


>tr|B7Z562|B7Z562_HUMAN cDNA FLJ59041 OS=Homo sapiens PE=2 SV=1
          Length = 218

 Score = 27.3 bits (59), Expect(2) = 2.7
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +1

Query: 184 KPDMPGKRPRPFLRTSSRPQLLQSCGHESP-PPPSPVGVKYDMGAPQRVVVGF 339
           KP  P K PRP      RP L      + P PPP P      +G  Q  V  F
Sbjct: 32  KPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLPPPRPPKPPSPLGLAQSKVTLF 84



 Score = 26.2 bits (56), Expect(2) = 2.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 137 CSLWSASPRLPCDTPPSP 190
           C LWS  P LP   PP P
Sbjct: 19  CGLWSPPPPLPPRKPPRP 36


>tr|B7FRG5|B7FRG5_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_42487 PE=4 SV=1
          Length = 199

 Score = 34.7 bits (78), Expect = 3.5
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = -3

Query: 457 ENYEDDDHHHHSMHPIPTQT*GSHKGRSEA*CCSLRH*HQSQQRHAAELPCHTSRLLARE 278
           + +++DDHHHH   P  T+  G                H+   +H AE  C       +E
Sbjct: 87  KKHKEDDHHHHDHKPHATKAHGEEH-------------HEHDHKHTAE--CTHDHAHQKE 131

Query: 277 EEGFHDRSSG 248
           EE  HD   G
Sbjct: 132 EEAKHDGHHG 141


>tr|Q2KSK5|Q2KSK5_ADE03 Hypothetical 12.6 kDa protein OS=Human
           adenovirus B serotype 3 GN=E2B PE=4 SV=1
          Length = 111

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = -1

Query: 255 ALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHR--------EQIQAQPPSR 112
           AL+     ARS +   A     G GG +QG+R  A HR        +Q+ ++PPSR
Sbjct: 42  ALDTASKHARSNRATAAQKEKQGHGGSAQGARNPASHRHLHQRTRGDQVPSEPPSR 97


>tr|Q3JGC1|Q3JGC1_BURP1 Acetyltransferase, GNAT family
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_A2231 PE=4 SV=1
          Length = 213

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -1

Query: 273 RAFMTAALEQLRSTARSQKGARALPRHIGLGGVSQGSRGDALHREQIQAQPPS 115
           R F   A+  LR  AR    A AL R  G   ++   R   LHR  + AQPP+
Sbjct: 80  RVFAQDAVRALRRVARVTSDAHALYRPAGFTALAHPPRWMELHRPGVYAQPPA 132