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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955549
Clone id TST39A01NGRL0023_G09
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_G09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTGGGCAGTGCAATAGCCATGGCGGACG
AGCCCAAATACGCCTACCCTTACCCCCCTCAGCAAGGTTATCCTCCTCAAGGCTACTACC
AGCAGCCTCCTCCTGTAGCGGTTCCTCCTCAATACTCACAGGCACCTCCGCGGAGACCTG
GCTTTCTTGAGGGCTGTTTAGCTGCCCTTTGTTGCTGTTGCCTGCTTGACGAGTGTTGCT
GTGACCCCACCATCTTCATCAACTAACTGCTACATAAAACCAATTGTTGCAGAGTAGCTG
AGAAGCTTTTGAGCCACAACATTGAGATTTTGCTCATGTGGAACTAGCGTCTTTTTTTTA
ATCTTACACTCTCAATCATGTTGTATGTGTATTTGTAGCCAGTGTAATTGGAAGATGATA
TACTTACCTTTTGTACAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6NV32
Definition sp|Q6NV32|PTMAA_DANRE Prothymosin alpha-A OS=Danio rerio
Align length 52
Score (bit) 32.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955549|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_G09, 5'
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NV32|PTMAA_DANRE Prothymosin alpha-A OS=Danio rerio GN=ptma...    32   1.2  
sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious bron...    32   1.5  
sp|P02548|NFL_BOVIN Neurofilament light polypeptide OS=Bos tauru...    30   3.4  
sp|Q9M160|Y4095_ARATH Uncharacterized protein At4g00950 OS=Arabi...    30   5.7  
sp|Q9Z507|UVRA_STRCO UvrABC system protein A OS=Streptomyces coe...    29   7.3  
sp|Q9QX96|SALL2_MOUSE Sal-like protein 2 OS=Mus musculus GN=Sall...    29   7.5  
sp|Q0KD80|RIMM_RALEH Ribosome maturation factor rimM OS=Ralstoni...    29   7.5  
sp|Q5R6J7|PLCF_PONAB 1-acyl-sn-glycerol-3-phosphate acyltransfer...    29   7.5  
sp|Q86UL3|PLCF_HUMAN 1-acyl-sn-glycerol-3-phosphate acyltransfer...    29   7.5  
sp|A3FPG8|PLCF_BOVIN 1-acyl-sn-glycerol-3-phosphate acyltransfer...    29   7.5  
sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain-containing protein 1...    29   7.5  
sp|P36396|SRY_URSAR Sex-determining region Y protein OS=Ursus ar...    29   9.8  

>sp|Q6NV32|PTMAA_DANRE Prothymosin alpha-A OS=Danio rerio GN=ptmaa
           PE=2 SV=1
          Length = 105

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 225 AGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKGRR 70
           A  + + + N  QE++V  E    + EE  +++  G   +ED  AEGG G+R
Sbjct: 34  ANGNAENEENGDQENEVDEEDD-DVAEEDEEDDGEGDDDDEDEEAEGGTGKR 84


>sp|P12650|SPIKE_IBVK Spike glycoprotein OS=Avian infectious
           bronchitis virus (strain KB8523) GN=S PE=3 SV=1
          Length = 1162

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 249 TIFIN*LLHKTNCCRVAEKLLSHNIEILLMWN*RLFFNLTLSIMLY 386
           T+F+    +K   C +   L  H+I +  M N +LF+NLT+S+  Y
Sbjct: 108 TVFVT-HCYKHGGCPITGMLQQHSIRVSAMKNGQLFYNLTVSVAKY 152


>sp|P02548|NFL_BOVIN Neurofilament light polypeptide OS=Bos taurus
           GN=NEFL PE=1 SV=3
          Length = 555

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 228 QAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKG 76
           +A    K +  +  E++  AE     EE   +EEAA    EE    EGG+G
Sbjct: 476 EAEEEEKEKEEAEAEAEAEAEAEAEEEEGAQEEEAAKEDAEEAKEEEGGEG 526


>sp|Q9M160|Y4095_ARATH Uncharacterized protein At4g00950
           OS=Arabidopsis thaliana GN=At4g00950 PE=2 SV=1
          Length = 291

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 219 NSNKGQLNSPQESQVSAEVPVSIEEEP 139
           N++   ++SP  S +SA VP S EEEP
Sbjct: 26  NTHSHSMSSPIHSSISASVPFSWEEEP 52


>sp|Q9Z507|UVRA_STRCO UvrABC system protein A OS=Streptomyces
            coelicolor GN=uvrA PE=3 SV=1
          Length = 1014

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 245  VTATLVKQATATKGS*TALKKARSP 171
            VT T  K+ATAT+ + TA+KKA  P
Sbjct: 979  VTGTAAKKATATRTAKTAVKKAAKP 1003


>sp|Q9QX96|SALL2_MOUSE Sal-like protein 2 OS=Mus musculus GN=Sall2
           PE=2 SV=1
          Length = 1004

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -2

Query: 240 SNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGG 82
           +++ Q+  S  G    PQ  Q S E  +S EEE  +EE    + +ED+LA  G
Sbjct: 733 NSSEQSTASGPGSFPQPQSQQPSPEEEMSEEEEEDEEEEEDVT-DEDSLAGRG 784


>sp|Q0KD80|RIMM_RALEH Ribosome maturation factor rimM OS=Ralstonia
           eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier
           337) GN=rimM PE=3 SV=1
          Length = 222

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
 Frame = -2

Query: 201 LNSPQESQVSAEV----PVSIEEEPLQEE-----AAGSSLEEDNLAEGGKGRRIWAR 58
           L  PQ   V+A+     PV ++    +E      A  S + + NLAE  KGRR+W R
Sbjct: 80  LAPPQAGLVAADASRAQPVCVKIAQSREHSGTVVAQASGVADRNLAEALKGRRVWIR 136


>sp|Q5R6J7|PLCF_PONAB 1-acyl-sn-glycerol-3-phosphate acyltransferase
           zeta OS=Pongo abelii GN=AGPAT6 PE=2 SV=2
          Length = 456

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 249 WGHSNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAE 88
           W      +       QL  P  + + A+ P S+EEE  +   +GSS   DN  E
Sbjct: 56  WATLRMERGAKEKNHQLYKPYTNGIIAKDPTSLEEEIKEIRRSGSSKALDNTPE 109


>sp|Q86UL3|PLCF_HUMAN 1-acyl-sn-glycerol-3-phosphate acyltransferase
           zeta OS=Homo sapiens GN=AGPAT6 PE=1 SV=1
          Length = 456

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 249 WGHSNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAE 88
           W      +       QL  P  + + A+ P S+EEE  +   +GSS   DN  E
Sbjct: 56  WATLRMERGAKEKNHQLYKPYTNGIIAKDPTSLEEEIKEIRRSGSSKALDNTPE 109


>sp|A3FPG8|PLCF_BOVIN 1-acyl-sn-glycerol-3-phosphate acyltransferase
           zeta OS=Bos taurus GN=AGPAT6 PE=3 SV=1
          Length = 456

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 249 WGHSNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAE 88
           W      +       QL  P  + + A+ P S+EEE  +   +GSS   DN  E
Sbjct: 56  WATLRMERGAKEKNHQLYKPYTNGIIAKDPTSLEEEIKEIRRSGSSKALDNTPE 109
tr_hit_id Q6K8A9
Definition tr|Q6K8A9|Q6K8A9_ORYSJ Os02g0288200 protein OS=Oryza sativa subsp. japonica
Align length 59
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955549|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_G09, 5'
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K8A9|Q6K8A9_ORYSJ Os02g0288200 protein OS=Oryza sativa subs...    35   2.4  
tr|B8AFP0|B8AFP0_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|A3A5N7|A3A5N7_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|A2SEW9|A2SEW9_METPP Putative uncharacterized protein OS=Methy...    33   5.4  
tr|Q4PTC0|Q4PTC0_9HIV1 Pol protein (Fragment) OS=Human immunodef...    33   7.1  
tr|B7TF90|B7TF90_9HIV1 Pol protein (Fragment) OS=Human immunodef...    33   7.1  
tr|Q6R2Q2|Q6R2Q2_ORYSI NBS-LRR-like protein A OS=Oryza sativa su...    33   7.1  
tr|B6MU31|B6MU31_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|A2F612|A2F612_TRIVA Ubiquitin-conjugating enzyme family prote...    33   7.1  
tr|Q0CJV2|Q0CJV2_ASPTN Putative uncharacterized protein OS=Asper...    33   9.2  

>tr|Q6K8A9|Q6K8A9_ORYSJ Os02g0288200 protein OS=Oryza sativa subsp.
           japonica GN=OJ1756_H07.29 PE=4 SV=1
          Length = 578

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 249 WGHSNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKGR 73
           WG  N + AGNS+K +    ++ +VS +   + +E+ + E A   + +   LAE  KG+
Sbjct: 290 WG-KNAKDAGNSSKNKKGQAKKDKVSGDSKEAAKEDKVDEAAIAVNEKGGTLAENKKGK 347


>tr|B8AFP0|B8AFP0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06790 PE=4 SV=1
          Length = 556

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 249 WGHSNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKGR 73
           WG  N + AGNS+K +    ++ +VS +   + +E+ + E A   + +   LAE  KG+
Sbjct: 268 WG-KNAKDAGNSSKNKKGQAKKDKVSGDSKEAAKEDKVDEAAIAVNEKGGTLAENKKGK 325


>tr|A3A5N7|A3A5N7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006109 PE=4 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 249 WGHSNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKGR 73
           WG  N + AGNS+K +    ++ +VS +   + +E+ + E A   + +   LAE  KG+
Sbjct: 280 WG-KNAKDAGNSSKNKKGQAKKDKVSGDSKEAAKEDKVDEAAIAVNEKGGTLAENKKGK 337


>tr|A2SEW9|A2SEW9_METPP Putative uncharacterized protein
           OS=Methylibium petroleiphilum (strain PM1) GN=Mpe_A1147
           PE=4 SV=1
          Length = 136

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 189 QESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKGRRIW 64
           Q  +V  + PV  E E L  +A   S E  + A+GG GRR+W
Sbjct: 90  QSIKVQPKGPVKAEYEVLPIDAGRDSAEGPSSAKGGAGRRVW 131


>tr|Q4PTC0|Q4PTC0_9HIV1 Pol protein (Fragment) OS=Human
           immunodeficiency virus 1 GN=pol PE=4 SV=1
          Length = 1004

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 240 SNTRQAGNSNKGQLNSP-----QESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKG 76
           SN R+AG   +G LN P     Q   VS +V   I+E  L   A  + LEE NL+   K 
Sbjct: 42  SNPREAGVEGQGTLNCPQITLWQRPMVSIKVGGQIKEALLDTGADDTVLEEINLSGKWKP 101

Query: 75  RRI 67
           R I
Sbjct: 102 RMI 104


>tr|B7TF90|B7TF90_9HIV1 Pol protein (Fragment) OS=Human
           immunodeficiency virus 1 GN=pol PE=4 SV=1
          Length = 1004

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 240 SNTRQAGNSNKGQLNSP-----QESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKG 76
           SN R+AG   +G LN P     Q   VS +V   I+E  L   A  + LEE NL+   K 
Sbjct: 42  SNPREAGVEGQGTLNCPQITLWQRPMVSIKVGGQIKEALLDTGADDTVLEEINLSGKWKP 101

Query: 75  RRI 67
           R I
Sbjct: 102 RMI 104


>tr|Q6R2Q2|Q6R2Q2_ORYSI NBS-LRR-like protein A OS=Oryza sativa
           subsp. indica GN=NL-A PE=4 SV=1
          Length = 921

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 204 QLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKGRR-IWARPPWLLHC 37
           QL  P +  V  E  V IEEE  +EE A    EED  A   KG+  +  R  WLL C
Sbjct: 684 QLEPPHD--VQEEEWVFIEEEFEEEEEAAEEGEEDGAASKQKGKEALSPRSSWLLPC 738


>tr|B6MU31|B6MU31_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_124709 PE=4 SV=1
          Length = 1914

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -2

Query: 246 GHSNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKGR 73
           G    RQAGNS     NS + S+ S+ VP +  +   ++ AA +    DN  E G G+
Sbjct: 12  GDPRDRQAGNS----ANSKKLSKTSSAVPRNSADSTYRDAAAATGAASDNKGEEGSGQ 65


>tr|A2F612|A2F612_TRIVA Ubiquitin-conjugating enzyme family protein
           OS=Trichomonas vaginalis G3 GN=TVAG_091080 PE=3 SV=1
          Length = 352

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 219 NSNKGQLNSPQESQVSAEVPVSIEEEPLQEEAAGSSLEEDNLAEGGKGR 73
           N N+ Q N+  E+ +S E P  IEEEP+QE  + + L ++   +  K +
Sbjct: 189 NDNQEQPNNENENNISQETP--IEEEPVQENPSQNELAQEKPEDNVKNQ 235


>tr|Q0CJV2|Q0CJV2_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_06032
           PE=4 SV=1
          Length = 1063

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 252 WWGHSNTRQAGNSNKGQLNSPQESQVSAEVPVSIEEEP-LQEEAAGSSLEEDNLAEGGKG 76
           W+        GNS +G+ N P +SQ+    P   +  P LQ   +  S   D LA+  + 
Sbjct: 137 WYKQFADLMMGNSTRGRTNEPGDSQIRMPSPSQFQAAPSLQSNPSRHSTPADELAQ--RF 194

Query: 75  RRIWARPP 52
            ++ A PP
Sbjct: 195 AKLKASPP 202