DK955452 |
Clone id |
TST39A01NGRL0023_C04 |
Library |
TST39 |
Length |
608 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C04. 5' end sequence. |
Accession |
DK955452 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL4134Contig1 |
Sequence |
AGAAACGAAGTCAGTGGCCAGAGCTCGCATTGCAGTGGATATCGGCTGACGGTGGCCAGC AGCTCTCCATGTGGGATAGGCTGCCATTCTGCCCTCCTTATAGCTGGCCGGCGGCCATCT TCTCAATGACGAAGGCAAGTCGATCACCGTCCTCGTCTCCCACCATTCTGCACCCTCATG AGGATGAAAGCTGTGAAACAAAGCAAAATTGTGAGGAAGGTCATGTGATGGTGATCAAAG AAGACAAGGACAATGCCATGAGCTCAGGTAAGGCACCGATCAGGTCCTTTAATTCGGCTT TTGCATCTGTCGGAAGGGACGGTGGTGCTCCAAATGGCGACAATGCAACCGAAGAGACTG TTTTAATCGGAGCCAACGATGTGGTGATGGATGTGAGGATTTGGAGCTCTCTTCCAGAAG ACATCATAGAGAAGGTGCTAGCATGGCTTCCACTCACTAGCGTGCTGCGATTCCGGGCAG TATGCCGACGATGGAACTCAGTGCTCCTATCAGGAAGGTTCTTGAGCTCACACTCTAAGA GCTCTCCACGCAGACAGCCCTGCTTTCTGCTCTGTACAATTGGCCAATTTGCATGCACCT ATGACCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LFV5 |
Definition |
sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Arabidopsis thaliana |
Align length |
77 |
Score (bit) |
60.5 |
E-value |
7.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LMU8 |
Definition |
tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
74 |
Score (bit) |
83.6 |
E-value |
8.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955452|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_C04, 5' (608 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea... 84 8e-15 tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella paten... 83 1e-14 tr|A9RNC3|A9RNC3_PHYPA Predicted protein OS=Physcomitrella paten... 73 1e-11 tr|B8LS03|B8LS03_PICSI Putative uncharacterized protein OS=Picea... 69 2e-10 tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment) OS=Physcomit... 69 2e-10 tr|A9NV51|A9NV51_PICSI Putative uncharacterized protein OS=Picea... 69 2e-10 tr|A9TY82|A9TY82_PHYPA Predicted protein OS=Physcomitrella paten... 67 1e-09 tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella paten... 66 1e-09 tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella paten... 66 2e-09 tr|A9TZQ0|A9TZQ0_PHYPA Predicted protein OS=Physcomitrella paten... 65 2e-09 tr|A7PAG5|A7PAG5_VITVI Chromosome chr14 scaffold_9, whole genome... 65 2e-09 tr|A5BFR1|A5BFR1_VITVI Putative uncharacterized protein OS=Vitis... 65 2e-09 tr|Q2WBM6|Q2WBM6_9LAMI Fimbriata protein OS=Misopates orontium G... 65 4e-09 tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella paten... 64 5e-09 tr|Q1KUZ9|Q1KUZ9_9ROSI Putative uncharacterized protein OS=Cleom... 64 7e-09 tr|A2Q633|A2Q633_MEDTR Cyclin-like F-box; Galactose oxidase, cen... 64 9e-09 tr|Q41223|Q41223_ANTMA Fim protein OS=Antirrhinum majus GN=fim P... 63 1e-08 tr|A7QP47|A7QP47_VITVI Chromosome chr1 scaffold_136, whole genom... 62 2e-08 tr|A5BZT8|A5BZT8_VITVI Putative uncharacterized protein OS=Vitis... 62 2e-08 tr|B4FF73|B4FF73_MAIZE F-box domain containing protein OS=Zea ma... 62 3e-08 tr|A9SEW3|A9SEW3_PHYPA Predicted protein OS=Physcomitrella paten... 62 3e-08 tr|A7P2M5|A7P2M5_VITVI Chromosome chr1 scaffold_5, whole genome ... 62 3e-08 tr|B8Y9B5|B8Y9B5_PONTR F-box family protein OS=Poncirus trifolia... 61 4e-08 tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella paten... 61 6e-08 tr|A9SY62|A9SY62_PHYPA Predicted protein OS=Physcomitrella paten... 60 8e-08 tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein (UFO-... 60 1e-07 tr|A9TXI0|A9TXI0_PHYPA Predicted protein OS=Physcomitrella paten... 60 1e-07 tr|B6U651|B6U651_MAIZE F-box domain containing protein OS=Zea ma... 60 1e-07 tr|A9TTQ6|A9TTQ6_PHYPA Predicted protein OS=Physcomitrella paten... 60 1e-07 tr|B6DXL9|B6DXL9_MALDO Fbox protein OS=Malus domestica PE=2 SV=1 59 2e-07
>tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 416
Score = 83.6 bits (205), Expect = 8e-15 Identities = 37/74 (50%), Positives = 57/74 (77%), Gaps = 1/74 (1%) Frame = +3
Query: 390 DVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRFLSSHSK-SSPRRQPCF 566 +V +WS LPED+++++ + LPLTS+L R VC+RWNS++ S RF ++ ++ SSPR P F Sbjct: 39 EVNLWSGLPEDLMDRIFSCLPLTSILHLRCVCKRWNSLVQSKRFQTALARVSSPR--PWF 96
Query: 567 LLCTIGQFACTYDP 608 +LCT+G+ +C YDP Sbjct: 97 ILCTMGRTSCCYDP 110
>tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_234671 PE=4 SV=1 Length = 462
Score = 82.8 bits (203), Expect = 1e-14 Identities = 35/75 (46%), Positives = 55/75 (73%) Frame = +3
Query: 381 VVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRFLSSHSKSSPRRQP 560 V MD +W SLPED++E+VLAWLP+ S+ R R VC++WNS+L S RF++ +++ SP++ P Sbjct: 65 VAMDESVWKSLPEDLMERVLAWLPIHSLFRMRCVCKQWNSILFSERFVARYTQVSPQK-P 123
Query: 561 CFLLCTIGQFACTYD 605 ++ T G+ + YD Sbjct: 124 WIIMYTAGRVSSAYD 138
>tr|A9RNC3|A9RNC3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160103 PE=4 SV=1 Length = 407
Score = 72.8 bits (177), Expect = 1e-11 Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 2/76 (2%) Frame = +3
Query: 387 MDVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRFLSSHSKSSPRRQPCF 566 MD +IWS LPED+ +VLAWLP+ S+ + R+VC+RW+S ++S FLS HS+ + P Sbjct: 33 MDPKIWSLLPEDLTNRVLAWLPIPSLFQARSVCQRWSSTIVSSAFLSMHSEILCQHSPFL 92
Query: 567 LLCTIGQ--FACTYDP 608 L +IG +DP Sbjct: 93 LFPSIGDSLLYAAFDP 108
>tr|B8LS03|B8LS03_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 394
Score = 69.3 bits (168), Expect = 2e-10 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 5/89 (5%) Frame = +3
Query: 354 ETVLIGANDVVMDVR-IWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRFLSS 530 E LI A + +D + +WS LPE++IE++L LP+ S ++FR VC +W S+ LS + Sbjct: 13 EKQLISAGCLQLDAKSLWSGLPEEVIERILLCLPVASTVQFRTVCTKWRSLFLSDAYWRK 72
Query: 531 HSK----SSPRRQPCFLLCTIGQFACTYD 605 + +R F LCT G+F+C +D Sbjct: 73 RYRMDQDQEVKRSAWFFLCTTGKFSCAFD 101
>tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_44026 PE=4 SV=1 Length = 330
Score = 69.3 bits (168), Expect = 2e-10 Identities = 29/66 (43%), Positives = 44/66 (66%) Frame = +3
Query: 375 NDVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRFLSSHSKSSPRR 554 + + +D +W SLPED+ +++LAWLP T+ R VC+RWNSV+ S FL + + P Sbjct: 1 SSIQLDGELWGSLPEDLQDRILAWLPFTAFARASTVCKRWNSVMYSHSFLEMYQR-VPSP 59
Query: 555 QPCFLL 572 +PCFL+ Sbjct: 60 EPCFLM 65
>tr|A9NV51|A9NV51_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 405
Score = 69.3 bits (168), Expect = 2e-10 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%) Frame = +3
Query: 354 ETVLIGANDVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRF---- 521 E I A + ++ +WS LPE++IE++L LP+ S ++FR+VC +W S+ LS + Sbjct: 23 EKQFIPAVCLQLEANLWSRLPEEMIERILLCLPVVSTVQFRSVCTKWKSLFLSDAYWRKR 82
Query: 522 --LSSHSKSSPRRQPCFLLCTIGQFACTYD 605 + +R F LCT GQF+C +D Sbjct: 83 YRMDQDQDQEVKRDAWFFLCTTGQFSCAFD 112
>tr|A9TY82|A9TY82_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_98858 PE=4 SV=1 Length = 395
Score = 66.6 bits (161), Expect = 1e-09 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Frame = +3
Query: 351 EETVLIGANDVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRFLSS 530 ++T+L N+ +D +WS LP +IEK+LAWLP+ S LRFR VC+ WN +L S FL Sbjct: 32 QDTLLPVHNECDLDSDLWSDLPRHLIEKILAWLPIPSYLRFRRVCKTWNKLLQSPGFL-R 90
Query: 531 HSKSSPRRQPCFLLCTIGQF--ACTYDP 608 P + FL+ + A TY+P Sbjct: 91 ECHDVPSQGSWFLMFKNDHYREAATYNP 118
>tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_114815 PE=4 SV=1 Length = 362
Score = 66.2 bits (160), Expect = 1e-09 Identities = 33/82 (40%), Positives = 48/82 (58%) Frame = +3
Query: 327 APNGDNATEETVLIGANDVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVL 506 A GD+AT+ +D +W SLPED+ +++LAWLP + R VC+RWNSV+ Sbjct: 3 AEQGDSATQ-----------LDGGLWGSLPEDLQDRILAWLPFPAFARACTVCKRWNSVM 51
Query: 507 LSGRFLSSHSKSSPRRQPCFLL 572 S FL + + P +PCFL+ Sbjct: 52 YSHSFLEMY-RRVPSPEPCFLM 72
>tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_91322 PE=4 SV=1 Length = 393
Score = 65.9 bits (159), Expect = 2e-09 Identities = 27/65 (41%), Positives = 44/65 (67%) Frame = +3
Query: 378 DVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRFLSSHSKSSPRRQ 557 +VVMD ++WS PED++++VLAWLPL+S+ R RAVCR WN + + F+ ++ + + Sbjct: 31 EVVMDPQLWSFFPEDLVDRVLAWLPLSSIFRLRAVCRTWNIITHTRGFVELYALTPSSKD 90
Query: 558 PCFLL 572 L+ Sbjct: 91 AWILI 95
>tr|A9TZQ0|A9TZQ0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172882 PE=4 SV=1 Length = 593
Score = 65.5 bits (158), Expect = 2e-09 Identities = 27/57 (47%), Positives = 39/57 (68%) Frame = +3
Query: 375 NDVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFRAVCRRWNSVLLSGRFLSSHSKSS 545 +D MD IW SLPED+ +K+L WLP+ S RFR VC+RW +++ S F HS+++ Sbjct: 224 SDPEMDENIWQSLPEDVADKILLWLPVASCARFRPVCKRWLNLMKSEGFFQMHSQNA 280
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