DK955377 |
Clone id |
TST39A01NGRL0022_O24 |
Library |
TST39 |
Length |
612 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_O24. 5' end sequence. |
Accession |
DK955377 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL160Contig1 |
Sequence |
GGCAAGAAAACTATGACTAAGTCATCTTGTATTATTACGGGTGCTTCCTCTGGCCTTGGA CTTGCCACAGCAAAGGCTTTGACAGAGTCAGGGGAATGGCATGTTGTCATGGCCTGCCGA GACTTTTTGAAGGCCGAAAAAGCTGCCAAATCAGTTGGTCTGCCTAAAGGGAGCTACACT GTCATGCATTTGGATTTAGCATCATTGGAGAGTGTGCGTCAGTTTGTCACCAATTTCAGG AACTCTGGCATGCCTTTGGACGTCCTAGTTTGCAACGCCGCTGTTTACTTCCCTACCGCA AAGGAGCCTACTTTCTCTGCTGAAGGATTTGAATTAAGCGTAGCCACCAACCACCTGGGA CACTTTCTTCTTGCCCGATTACTCCTTGAGGACCTTGAAAAATCGCAAAGTAAGGCGAAG CGCTTGATTATTGTTGGATCTATCACTGGCAATACAAACACCCTTGCTGGAAACATCCCC CCGAAAGCCAACCTTGGTGATCTTAGAGGTCTTTCTGGAGGGCTGAATGGTGTCAATGCC TCTCCTATGATCGATGGCGGAGCTTTTGATGGGGCGAAAGCGTACAAGGACAGCAAAGTC TGCAACATGCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P21218 |
Definition |
sp|P21218|PORB_ARATH Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana |
Align length |
198 |
Score (bit) |
308.0 |
E-value |
1.0e-83 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955377|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_O24, 5' (598 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P21218|PORB_ARATH Protochlorophyllide reductase B, chloroplas... 308 1e-83 sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplastic... 302 7e-82 sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplasti... 300 3e-81 sp|O80333|POR_MARPA Protochlorophyllide reductase, chloroplastic... 297 3e-80 sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplastic O... 295 2e-79 sp|Q42536|PORA_ARATH Protochlorophyllide reductase A, chloroplas... 295 2e-79 sp|O48741|PORC_ARATH Protochlorophyllide reductase C, chloroplas... 289 9e-78 sp|Q42850|PORB_HORVU Protochlorophyllide reductase B, chloroplas... 281 2e-75 sp|P15904|POR_AVESA Protochlorophyllide reductase (Fragment) OS=... 273 5e-73 sp|Q41578|PORA_WHEAT Protochlorophyllide reductase A, chloroplas... 270 5e-72 sp|P13653|PORA_HORVU Protochlorophyllide reductase A, chloroplas... 270 5e-72 sp|Q39617|POR_CHLRE Protochlorophyllide reductase, chloroplastic... 259 7e-69 sp|O66148|POR_PLEBO Light-dependent protochlorophyllide reductas... 197 3e-50 sp|Q59987|POR_SYNY3 Light-dependent protochlorophyllide reductas... 179 1e-44 sp|Q803A8|WWOX_DANRE WW domain-containing oxidoreductase OS=Dani... 75 3e-13 sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gall... 73 1e-12 sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo... 72 2e-12 sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pong... 70 6e-12 sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus ... 67 5e-11 sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens G... 66 1e-10 sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens G... 65 2e-10 sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus G... 65 3e-10 sp|Q9ERI6|RDH14_MOUSE Retinol dehydrogenase 14 OS=Mus musculus G... 65 3e-10 sp|P59837|RDH12_BOVIN Retinol dehydrogenase 12 OS=Bos taurus GN=... 64 6e-10 sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens G... 63 1e-09 sp|Q6UX07|DHR13_HUMAN Dehydrogenase/reductase SDR family member ... 62 2e-09 sp|Q9HBH5|RDH14_HUMAN Retinol dehydrogenase 14 OS=Homo sapiens G... 62 3e-09 sp|Q8VBZ0|DHRSX_MOUSE Dehydrogenase/reductase SDR family member ... 62 3e-09 sp|Q17QU7|DHR13_BOVIN Dehydrogenase/reductase SDR family member ... 61 4e-09 sp|Q8CEE7|RDH13_MOUSE Retinol dehydrogenase 13 OS=Mus musculus G... 60 8e-09
>sp|P21218|PORB_ARATH Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3 Length = 401
Score = 308 bits (790), Expect = 1e-83 Identities = 153/198 (77%), Positives = 171/198 (86%) Frame = +2
Query: 5 KSSCIITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDL 184 K + ++TGASSGLGLATAKAL E+G+W+V+MACRDFLKAE+AAKSVG+PK SYTVMHLDL Sbjct: 88 KGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSVGMPKDSYTVMHLDL 147
Query: 185 ASLESVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXX 364 ASL+SVRQFV NFR + PLDVLVCNAAVYFPTAKEPT+SAEGFELSVATNH Sbjct: 148 ASLDSVRQFVDNFRRTETPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHFLLAR 207
Query: 365 XXXXXXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDG 544 +KS +KRLIIVGSITGNTNTLAGN+PPKANLGDLRGL+GGLNG+N+S MIDG Sbjct: 208 LLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDG 267
Query: 545 GAFDGAKAYKDSKVCNML 598 G FDGAKAYKDSKVCNML Sbjct: 268 GDFDGAKAYKDSKVCNML 285
>sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1 Length = 398
Score = 302 bits (774), Expect = 7e-82 Identities = 150/198 (75%), Positives = 166/198 (83%) Frame = +2
Query: 5 KSSCIITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDL 184 K S IITGASSGLGLATAKAL E+G+WHV+MACRDFLKAE+AAKS G+PK +YT+MHLDL Sbjct: 85 KGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGMPKENYTIMHLDL 144
Query: 185 ASLESVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXX 364 ASL+SVRQFV FR S PLDVLVCNAAVYFPTAKEPT++A+GFELSV TNH Sbjct: 145 ASLDSVRQFVETFRRSERPLDVLVCNAAVYFPTAKEPTYTADGFELSVGTNHLGHFLLSR 204
Query: 365 XXXXXXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDG 544 KS +KRLIIVGSITGNTNTLAGN+PPKANLGDLRGL+GGLNG+N+S MIDG Sbjct: 205 LLLDDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGMNSSAMIDG 264
Query: 545 GAFDGAKAYKDSKVCNML 598 FDGAKAYKDSKVCNML Sbjct: 265 AEFDGAKAYKDSKVCNML 282
>sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1 Length = 398
Score = 300 bits (769), Expect = 3e-81 Identities = 152/198 (76%), Positives = 166/198 (83%) Frame = +2
Query: 5 KSSCIITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDL 184 K S +ITGASSGLGLATAKAL E+G+WHV+MACRDFLKAE+AAKS G+ K +YTVMHLDL Sbjct: 86 KGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGITKENYTVMHLDL 145
Query: 185 ASLESVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXX 364 ASL+SVRQFV NFR SG PLDVLVCNAAVY PTAKEPTF+AEGFELSV TNH Sbjct: 146 ASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 205
Query: 365 XXXXXXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDG 544 KS +KRLIIVGSITGNTNTLAGN+PPKANLGDLRGL+GGLNG+ +S MIDG Sbjct: 206 LLLEDLNKSSYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLKSS-MIDG 264
Query: 545 GAFDGAKAYKDSKVCNML 598 G FDGAKAYKDSKVCNML Sbjct: 265 GEFDGAKAYKDSKVCNML 282
>sp|O80333|POR_MARPA Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1 Length = 458
Score = 297 bits (760), Expect = 3e-80 Identities = 146/198 (73%), Positives = 165/198 (83%) Frame = +2
Query: 2 TKSSCIITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLD 181 TKS+CIITGASSGLGLATAKAL ++GEWHV+MACRDFLKAE+AA+SVG+PK SYTV+H D Sbjct: 144 TKSTCIITGASSGLGLATAKALADTGEWHVIMACRDFLKAERAARSVGIPKDSYTVIHCD 203
Query: 182 LASLESVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXX 361 LAS +SVR FV NFR + LDVLVCNAAVYFPT KEP FSAEGFELSV TNH Sbjct: 204 LASFDSVRAFVDNFRRTERQLDVLVCNAAVYFPTDKEPKFSAEGFELSVGTNHMGHFLLA 263
Query: 362 XXXXXXXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMID 541 +K++ KR+IIVGSITGN+NT+AGN+PPKANLG LRGL+GGLNGVN+S MID Sbjct: 264 RLLMEDLQKAKDSLKRMIIVGSITGNSNTVAGNVPPKANLGHLRGLAGGLNGVNSSSMID 323
Query: 542 GGAFDGAKAYKDSKVCNM 595 GG FDGAKAYKDSKVCNM Sbjct: 324 GGEFDGAKAYKDSKVCNM 341
>sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1 Length = 399
Score = 295 bits (754), Expect = 2e-79 Identities = 146/198 (73%), Positives = 166/198 (83%) Frame = +2
Query: 5 KSSCIITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDL 184 K + +ITGASSGLGLATAKAL ESG+WHV+MACRD+LKA +AAKS GL K +YT+MHLDL Sbjct: 86 KGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAARAAKSAGLAKENYTIMHLDL 145
Query: 185 ASLESVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXX 364 ASL+SVRQFV NFR S MPLDVL+ NAAVYFPTAKEP+F+A+GFE+SV TNH Sbjct: 146 ASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTADGFEISVGTNHLGHFLLSR 205
Query: 365 XXXXXXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDG 544 +KS +KRLIIVGSITGNTNTLAGN+PPKANLGDLRGL+GGL G+N+S MIDG Sbjct: 206 LLLEDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLTGLNSSAMIDG 265
Query: 545 GAFDGAKAYKDSKVCNML 598 G FDGAKAYKDSKVCNML Sbjct: 266 GDFDGAKAYKDSKVCNML 283
>sp|Q42536|PORA_ARATH Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=2 SV=2 Length = 405
Score = 295 bits (754), Expect = 2e-79 Identities = 146/198 (73%), Positives = 165/198 (83%) Frame = +2
Query: 5 KSSCIITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDL 184 K + ++TGASSGLGLATAKAL E+G+WHV+MACRDFLKAE+AA+S G+PK SYTVMHLDL Sbjct: 92 KGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAQSAGMPKDSYTVMHLDL 151
Query: 185 ASLESVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXX 364 ASL+SVRQFV NFR + MPLDVLVCNAAVY PTA +PTF+AEGFELSV NH Sbjct: 152 ASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSR 211
Query: 365 XXXXXXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDG 544 + S +KRLIIVGSITGNTNTLAGN+PPKANLGDLRGL+GGLNG+N+S MIDG Sbjct: 212 LLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDG 271
Query: 545 GAFDGAKAYKDSKVCNML 598 G F GAKAYKDSKVCNML Sbjct: 272 GDFVGAKAYKDSKVCNML 289
>sp|O48741|PORC_ARATH Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1 Length = 401
Score = 289 bits (739), Expect = 9e-78 Identities = 145/198 (73%), Positives = 165/198 (83%) Frame = +2
Query: 5 KSSCIITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDL 184 K + +ITGASSGLGLATAKAL ++G+WHV+MACR+FLKAEKAA+SVG+ K YTVMHLDL Sbjct: 89 KGTAVITGASSGLGLATAKALADTGKWHVIMACRNFLKAEKAARSVGMSKEDYTVMHLDL 148
Query: 185 ASLESVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXX 364 ASLESV+QFV NFR + PLDVLVCNAAVY PTAKEP+F+AEGFE+SV TNH Sbjct: 149 ASLESVKQFVENFRRTEQPLDVLVCNAAVYQPTAKEPSFTAEGFEISVGTNHLGHFLLSR 208
Query: 365 XXXXXXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDG 544 +KS +KR+IIVGSITGNTNTLAGN+PPKANLGDLRGL+ GLNG N+S MIDG Sbjct: 209 LLLDDLKKSDYPSKRMIIVGSITGNTNTLAGNVPPKANLGDLRGLASGLNGQNSS-MIDG 267
Query: 545 GAFDGAKAYKDSKVCNML 598 G FDGAKAYKDSKVCNML Sbjct: 268 GEFDGAKAYKDSKVCNML 285
>sp|Q42850|PORB_HORVU Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1 Length = 395
Score = 281 bits (719), Expect = 2e-75 Identities = 137/196 (69%), Positives = 160/196 (81%) Frame = +2
Query: 11 SCIITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDLAS 190 + IITGASSGLGLATAKAL ESG+WHV+MACRD+LK +AA++ G+PKGSYT++HLDLAS Sbjct: 84 NAIITGASSGLGLATAKALAESGKWHVIMACRDYLKTARAARAAGMPKGSYTIVHLDLAS 143
Query: 191 LESVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXXXX 370 L+SVRQFV N R MP+DV+VCNAAVY PTAKEP+F+A+GFE+SV NH Sbjct: 144 LDSVRQFVKNVRQLDMPIDVVVCNAAVYQPTAKEPSFTADGFEMSVGVNHLGHFLLAREL 203
Query: 371 XXXXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDGGA 550 + S +KRLIIVGSITGNTNTLAGN+PPKANLGDLRGL+ GLNGV ++ MIDG Sbjct: 204 LEDLKASDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAAGLNGVGSAAMIDGAE 263
Query: 551 FDGAKAYKDSKVCNML 598 FDGAKAYKDSKVCNML Sbjct: 264 FDGAKAYKDSKVCNML 279
>sp|P15904|POR_AVESA Protochlorophyllide reductase (Fragment) OS=Avena sativa PE=2 SV=1 Length = 313
Score = 273 bits (698), Expect = 5e-73 Identities = 137/195 (70%), Positives = 157/195 (80%), Gaps = 1/195 (0%) Frame = +2
Query: 17 IITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDLASLE 196 +ITGASSGLGLA AKAL E+G+WHVVMACRDFLKA KAAK+ G+ GSYTVMHLDLASL+ Sbjct: 3 VITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLD 62
Query: 197 SVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXXXXXX 376 SVRQFV FR + MPLDVLVCNAA+Y PTA++PTF+AEG E+SV NH Sbjct: 63 SVRQFVDAFRRAEMPLDVLVCNAAIYRPTARKPTFTAEGVEMSVGVNHLGHFLLARLLLE 122
Query: 377 XXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDGG-AF 553 +KS ++RL+IVGSITGN NTLAGN+PPKANLGDLRGL+GGL G + S MIDG +F Sbjct: 123 DLQKSDYPSRRLVIVGSITGNDNTLAGNVPPKANLGDLRGLAGGLTGASGSAMIDGDESF 182
Query: 554 DGAKAYKDSKVCNML 598 DGAKAYKDSKVCNML Sbjct: 183 DGAKAYKDSKVCNML 197
>sp|Q41578|PORA_WHEAT Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1 Length = 388
Score = 270 bits (689), Expect = 5e-72 Identities = 134/195 (68%), Positives = 158/195 (81%), Gaps = 1/195 (0%) Frame = +2
Query: 17 IITGASSGLGLATAKALTESGEWHVVMACRDFLKAEKAAKSVGLPKGSYTVMHLDLASLE 196 +ITGASSGLGLA AKAL E+G+WHVVMACRDFLKA KAAK+ G+ GSYTVMHLDLASL+ Sbjct: 78 VITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLD 137
Query: 197 SVRQFVTNFRNSGMPLDVLVCNAAVYFPTAKEPTFSAEGFELSVATNHXXXXXXXXXXXX 376 SVRQFV FR + MPLDVLVCNAA+Y PTA+ PTF+A+G E+SV NH Sbjct: 138 SVRQFVDAFRRAEMPLDVLVCNAAIYRPTARTPTFTADGHEMSVGVNHLGHFLLARLLME 197
Query: 377 XXEKSQSKAKRLIIVGSITGNTNTLAGNIPPKANLGDLRGLSGGLNGVNASPMIDGG-AF 553 +KS ++R++IVGSITGN+NTLAGN+PPKA+LGDLRGL+GGL+G + S MIDG +F Sbjct: 198 DLQKSDYPSRRMVIVGSITGNSNTLAGNVPPKASLGDLRGLAGGLSGASGSAMIDGDESF 257
Query: 554 DGAKAYKDSKVCNML 598 DGAKAYKDSKVCNML Sbjct: 258 DGAKAYKDSKVCNML 272
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6VGD9 |
Definition |
tr|B6VGD9|B6VGD9_CHOBU Protochlorophyllide oxidoreductase B OS=Chorispora bungeana |
Align length |
198 |
Score (bit) |
311.0 |
E-value |
2.0e-83 |
Report |
|