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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955248
Clone id TST39A01NGRL0022_J10
Library
Length 333
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_J10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAAGAGGGTTTTCTTCTTCCCGCTTCTCCACATACACTCACTCCCCCTCCCAGCGCGTGG
CGGCCGCTTCTGCTCCTGAAGTCTGCAGCTTCCGGCTCCATTTTCGAGCTCGCCATTGTT
CCTGTACCTTGCCCCTCTACAGAAATTCGGCTTATTGCGGCTTCCATGGCTCTGGCTGAA
GTGGTGGCCGCGGCGCCTGACTCGGCTCACCATACAGGTGATCCGGTTCGGACTATGGGT
GGTGGTTTCAAAGGGGACCTACCTCAGGAACATGTTTCCGACGACAAGAATGGGGATGCT
ACTCAGTTTAAAAAGATTAGATGGAGCAGCTGA
■■Homology search results ■■ -
sp_hit_id Q8AZM0
Definition sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead virus
Align length 54
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955248|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_J10, 5'
         (333 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead...    31   1.7  
sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subs...    31   1.7  
sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle ...    31   2.2  
sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing p...    30   2.9  
sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus gen...    30   3.8  
sp|P35523|CLCN1_HUMAN Chloride channel protein, skeletal muscle ...    30   3.8  
sp|Q8BYG0|TTC24_MOUSE Tetratricopeptide repeat protein 24 OS=Mus...    30   3.8  
sp|Q4I8X0|TRM10_GIBZE tRNA (guanine-N(1)-)-methyltransferase OS=...    30   4.9  
sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1...    29   6.4  
sp|A7M7C7|CORL2_MOUSE Ladybird homeobox corepressor 1-like prote...    29   6.4  
sp|Q9H3S7|PTN23_HUMAN Tyrosine-protein phosphatase non-receptor ...    29   8.4  

>sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead
            virus PE=1 SV=1
          Length = 1069

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = -3

Query: 217  LYGEPSQAPRPPLQPEPWKPQ*AEFL*RGKVQEQWRARKWSRKLQTSGAEAAAT 56
            +YG P+QAP PP   E       E   RG  Q Q R  +       SG+ AAAT
Sbjct: 983  IYGSPNQAPAPPEFVEEVAAVLMENNGRGPNQAQMRELRLKALTMKSGSGAAAT 1036


>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp.
            japonica GN=FH12 PE=3 SV=3
          Length = 1669

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 244  HHP*SEPDHLYGEPSQAPRPPLQPEP 167
            HHP   P +L GE   AP PP  P P
Sbjct: 1043 HHPPERPHYLPGEVGGAPSPPSPPPP 1068


>sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle
            OS=Mus musculus GN=Clcn1 PE=2 SV=2
          Length = 994

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 13   LLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEI 147
            ++P  P T  PPPS   P  L  + A G + EL +V    P  E+
Sbjct: 928  MVPTMPETPVPPPSPEAPSCLAPARAEGELEELEMVGSLEPEEEL 972


>sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing
           protein FLJ44005 OS=Homo sapiens PE=2 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 123 RNNG--ELENGAGSCRLQEQKRPPRAGRGSECMWRSGK 16
           RN G  ELE  AGS R +EQ  P   GR     W SG+
Sbjct: 7   RNRGLRELEEVAGSSRTREQLVPRLGGRAGYDWWASGE 44


>sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus genotype
            2c (isolate BEBE1) PE=3 SV=3
          Length = 3037

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
 Frame = +1

Query: 7    GFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEIRLIXXXXXXXXXX 186
            G  LP    T  PPP   R ++L +S    ++ ELAI    CP                 
Sbjct: 2317 GCALPPPGTTPVPPPRRRRAVVLDQSNVGEALKELAIKSFGCPPP--------------- 2361

Query: 187  XXXXXXXHHTGDPVRTMGGGFKGDL---PQEHVSDDKNGDAT 303
                     +GDP  + GGG  G+    P +   D + G  +
Sbjct: 2362 ---------SGDPGHSTGGGTTGETSKSPPDEPDDSEAGSVS 2394


>sp|P35523|CLCN1_HUMAN Chloride channel protein, skeletal muscle
            OS=Homo sapiens GN=CLCN1 PE=1 SV=2
          Length = 988

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 7    GFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVP 129
            G ++ ASP T  P PS   PL L      G + EL +V  P
Sbjct: 920  GDVIAASPETPVPSPSPEPPLSLAPGKVEGELEELELVESP 960


>sp|Q8BYG0|TTC24_MOUSE Tetratricopeptide repeat protein 24 OS=Mus
           musculus GN=Ttc24 PE=2 SV=1
          Length = 334

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -3

Query: 292 HSCRRKHVPEVGPL*NHHP*SEPDHLYGEPSQAPRPPLQPEPWKPQ*AEFL*R--GKVQE 119
           H    K+  E   L  H P S  + L  + + A R  +  E  K   A FL    GK+Q 
Sbjct: 168 HDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQE--KIAQARFLPSAPGKLQT 225

Query: 118 QWRARKWSRKLQTSGAEAAATRWEGE 41
             +A K S ++Q+S  +A  ++WEGE
Sbjct: 226 SRKA-KTSARVQSSAEDAQESQWEGE 250


>sp|Q4I8X0|TRM10_GIBZE tRNA (guanine-N(1)-)-methyltransferase
           OS=Gibberella zeae GN=TRM10 PE=3 SV=1
          Length = 407

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = -3

Query: 205 PSQAPRPP----LQPEPWKPQ*AEFL*RGKVQEQWRARKWSRKLQTSGAEAAATRWEGE* 38
           PSQ    P     + EP +P     L R + Q+QW A K  RKL+   +  A        
Sbjct: 48  PSQGSTIPQKRSAEDEPAQPMSKNALKRLRKQQQWEAGKEDRKLKRKDSRIARK------ 101

Query: 37  VYVEKREEENPL 2
             V KREE + L
Sbjct: 102 --VRKREERDAL 111


>sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1
           OS=Homo sapiens GN=HRCT1 PE=2 SV=1
          Length = 115

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 298 HPHSCRRKHVPEVGPL*NHHP*SEPDHLY 212
           H H     HVP VG   +HHP   P HL+
Sbjct: 73  HRHPGHVSHVPNVGLHHHHHPRHTPHHLH 101


>sp|A7M7C7|CORL2_MOUSE Ladybird homeobox corepressor 1-like protein
           OS=Mus musculus GN=Corl2 PE=1 SV=1
          Length = 1008

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 268 PEVGPL*NHHP*SEPDHLYGEPSQAPRP--PLQPEPWKP 158
           P   P  +HH    P H +  P Q P P   LQP+P +P
Sbjct: 645 PHSAPAHHHHHHHHPHHHHHHPPQPPSPLLLLQPQPDEP 683
tr_hit_id A6G5F2
Definition tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein OS=Plesiocystis pacifica SIR-1
Align length 18
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955248|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_J10, 5'
         (333 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein OS=Plesi...    35   2.5  
tr|A3Z252|A3Z252_9SYNE Deoxyribodipyrimidine photolyase OS=Synec...    34   3.2  
tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI204...    34   3.2  
tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH2060...    34   3.2  
tr|Q2BC21|Q2BC21_9BACI Helicase, SWF/SNF family protein OS=Bacil...    34   4.2  
tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116 ...    34   4.2  
tr|A5JZZ7|A5JZZ7_PLAVI Formin 2, putative OS=Plasmodium vivax GN...    33   7.2  
tr|B6HSL9|B6HSL9_PENCH Pc22g04050 protein OS=Penicillium chrysog...    33   7.2  
tr|Q4SN68|Q4SN68_TETNG Chromosome 8 SCAF14543, whole genome shot...    33   9.4  
tr|Q6T445|Q6T445_LEIMA MP90 OS=Leishmania major PE=4 SV=1              33   9.4  
tr|Q4QCV6|Q4QCV6_LEIMA RNA editing complex protein MP90, putativ...    33   9.4  
tr|Q4JTE2|Q4JTE2_CORJK Putative uncharacterized protein OS=Coryn...    33   9.4  

>tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_03463 PE=4 SV=1
          Length = 480

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 211 GEPSQAPRPPLQPEPWKP 158
           G+P+ AP PP +PEPW+P
Sbjct: 154 GDPADAPEPPPEPEPWEP 171


>tr|A3Z252|A3Z252_9SYNE Deoxyribodipyrimidine photolyase
           OS=Synechococcus sp. WH 5701 GN=WH5701_10699 PE=3 SV=1
          Length = 508

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 37  LTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEI 147
           + PPP A +PL  L   A  S  EL + P PCP  ++
Sbjct: 154 MVPPPEALQPLAGLDPGAIPSASELGLAPDPCPGRQV 190


>tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI20446
           PE=4 SV=1
          Length = 791

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
 Frame = -3

Query: 298 HPHSCRRK----------HVPEVGPL*NHHP*SEPDHLYGEP---SQAPRPPLQPEPWKP 158
           HPHS   +          H P   P+   HP + P H++G P     AP  P+ P P  P
Sbjct: 228 HPHSVHPREYRPMHHEYPHPPRGPPIHRGHPHAHPHHMHGHPPPHQYAPMRPMAPRPHVP 287


>tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH20604
           PE=4 SV=1
          Length = 793

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
 Frame = -3

Query: 298 HPHSCRRK----------HVPEVGPL*NHHP*SEPDHLYGEP---SQAPRPPLQPEPWKP 158
           HPH+   +          H P   P+   HP + P HL+G P     AP  P+ P P  P
Sbjct: 228 HPHAAHPREYRPMHHEYPHPPRGPPMHRGHPHTHPHHLHGHPPPHQYAPMRPMAPRPHVP 287


>tr|Q2BC21|Q2BC21_9BACI Helicase, SWF/SNF family protein OS=Bacillus
           sp. NRRL B-14911 GN=B14911_18970 PE=4 SV=1
          Length = 1061

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
 Frame = +1

Query: 1   KEGFLLPASPHTLTPPPSAWRPLLLLKSAA-------SGSIFELAIVPV-PCP 135
           KEG  L A P  L  PP++WR LL L +AA        G ++E   +PV P P
Sbjct: 217 KEGQTLEAEPSILLIPPTSWRRLLSLLTAAPMVQLKNKGQVYEGISLPVEPLP 269


>tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116
           PE=4 SV=1
          Length = 793

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
 Frame = -3

Query: 298 HPHSCRRK----------HVPEVGPL*NHHP*SEPDHLYGEP---SQAPRPPLQPEPWKP 158
           HPH+   +          H P   P+   HP + P HL+G P     AP  P+ P P  P
Sbjct: 228 HPHAVHPREYRPMHHEYPHPPRGPPMHRGHPHAHPHHLHGHPPPHQYAPMRPMAPRPHVP 287


>tr|A5JZZ7|A5JZZ7_PLAVI Formin 2, putative OS=Plasmodium vivax
            GN=PVX_123615 PE=4 SV=1
          Length = 2840

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = -1

Query: 252  FETTTHSPNRITCMVSRVRRRGHHFSQSHGSRNKPNFCRGA----RYRNNGE--LENGAG 91
            F   +H P    C+ +++RR   H+S  +GS    + C GA      R+NG   L    G
Sbjct: 892  FVDRSHEPT--ACVSNKLRRTASHYSLRNGSNGCSDSCEGASLNTENRSNGSNGLNRSNG 949

Query: 90   SCRLQEQKRPPRAGRGS 40
            S R     R  R+ R +
Sbjct: 950  SNRSNGSNRSNRSNRST 966


>tr|B6HSL9|B6HSL9_PENCH Pc22g04050 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc22g04050 PE=4 SV=1
          Length = 1261

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -3

Query: 280 RKHVPEVGPL*NHHP*SEPDHLYGEPSQAPRPPLQPEPWKPQ 155
           R   PE     NH P SEP+HL G  S +PR  ++P P +P+
Sbjct: 51  RTVTPESHSPANHSPLSEPEHLTG-ASSSPRNTVRPRPNEPE 91


>tr|Q4SN68|Q4SN68_TETNG Chromosome 8 SCAF14543, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00015416001
           PE=4 SV=1
          Length = 793

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 7   GFLLPASPHTLTPPPSAWRPLLLLKSAASGSI---FELAIV-PVPCPSTEIRLI 156
           G   P+ P  + P PSA  PLLLL S++S S+     L +  P  C ST + L+
Sbjct: 585 GISAPSQPIQIFPNPSANAPLLLLSSSSSSSLGLTLPLTLAQPASCSSTPMFLL 638


>tr|Q6T445|Q6T445_LEIMA MP90 OS=Leishmania major PE=4 SV=1
          Length = 1022

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -1

Query: 177 SQSHGSRNKPNFCRGARYRNNGELENGAGSCRLQEQKRPPRAGRGSECMWRSG 19
           S++H S    N   GARY    E +NGAGS   Q   R  RA  G++ +  +G
Sbjct: 203 SRTHSSGGSANSDLGARYE---EADNGAGSGHQQHTSRLDRAAHGTKGLSAAG 252