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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955175
Clone id TST39A01NGRL0022_G08
Library
Length 491
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_G08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGCAAAAAGCCAATCTCTAGCGTCTAAATGTTTGTCAAATCGTCTCATGAGTTATGTGTG
CTTGCAGTTGGTGGTTTCGACTTGGTCAATGAGGGCAAATGCGTTGGCAAGGGTTCTTGG
GTCAGACACTTGGTATGCTTTATGGTTGTGGTATGCAATGCATCTCCCTCTTCTTGTTCT
GAGAGGCCTCAGACCCATGACCCTATCAATCTCGTTGTCGTGCTTGATACTAGTGGGAGC
ATGGCGAGCTTTTGGCTTTGGAGCTAATCATGATGCTGCTATCATGCATGCCATATGTGA
GGTCTCAGGGGGTACATTCTCGTTCATCCAGGCTAAAGAAAGAGTCCAGGATGCTTTTGC
ACAGTGCATTGGTGGCTTATTGAGTGTGGTAGCCCAAGATGTAGAGCTAAACGTTTCTTC
CTGGCAGCTATCGCAATTGTGTTGTACACGTGGGCAGCATGGTCAACTCAATTATCATGG
GAGTCAATCAT
■■Homology search results ■■ -
sp_hit_id O00534
Definition sp|O00534|LHR2A_HUMAN Loss of heterozygosity 11 chromosomal region 2 gene A protein OS=Homo sapiens
Align length 61
Score (bit) 38.5
E-value 0.017
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955175|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_G08, 5'
         (491 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O00534|LHR2A_HUMAN Loss of heterozygosity 11 chromosomal regi...    39   0.017
sp|Q75WE7|LHR2A_RAT Loss of heterozygosity 11 chromosomal region...    36   0.083
sp|Q99KC8|LHR2A_MOUSE Loss of heterozygosity 11 chromosomal regi...    33   0.70 
sp|P08739|NU5M_CHLRE NADH-ubiquinone oxidoreductase chain 5 OS=C...    33   0.92 
sp|P29920|NQO8_PARDE NADH-quinone oxidoreductase subunit 8 OS=Pa...    32   1.6  
sp|Q03613|YN84_CAEEL Probable G-protein coupled receptor ZC84.4 ...    30   4.5  
sp|Q28992|VIPR1_PIG Vasoactive intestinal polypeptide receptor 1...    30   4.5  
sp|Q3ITK1|DNLJ_NATPD DNA ligase OS=Natronomonas pharaonis (strai...    30   5.9  
sp|P11622|ORF1_PLRVW Uncharacterized protein ORF1 OS=Potato leaf...    30   7.8  
sp|Q6ZUJ4|CC062_HUMAN Uncharacterized protein C3orf62 OS=Homo sa...    30   7.8  

>sp|O00534|LHR2A_HUMAN Loss of heterozygosity 11 chromosomal region
           2 gene A protein OS=Homo sapiens GN=LOH11CR2A PE=2 SV=2
          Length = 786

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNVSSWQ 427
           +FG G     +++  I   SGGT  FI  K+R+Q    + +   L  V +DV L   SW 
Sbjct: 418 SFGIGEGTSTSLIKGIARASGGTSEFITGKDRMQSKALRTLKRSLQPVVEDVSL---SWH 474

Query: 428 L 430
           L
Sbjct: 475 L 475


>sp|Q75WE7|LHR2A_RAT Loss of heterozygosity 11 chromosomal region 2
           gene A protein homolog OS=Rattus norvegicus GN=Loh11cr2a
           PE=2 SV=1
          Length = 822

 Score = 36.2 bits (82), Expect = 0.083
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGL---LSVVAQDVELNVS 418
           +FG G     +++  I  VSGGT  FI  K+R+Q   A+ +G L   L     D+ L   
Sbjct: 418 SFGIGQGASTSLIKNIARVSGGTAEFITGKDRMQ---AKALGSLKLALQCALDDISL--- 471

Query: 419 SWQL 430
           SW+L
Sbjct: 472 SWEL 475


>sp|Q99KC8|LHR2A_MOUSE Loss of heterozygosity 11 chromosomal region
           2 gene A protein homolog OS=Mus musculus GN=Loh11cr2a
           PE=1 SV=2
          Length = 793

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNVSSWQ 427
           +FG G     +++  I  VSGGT  FI  K+R+Q    + +G L   +   V+    SW 
Sbjct: 418 SFGIGQGASTSLIKNIARVSGGTAVFITGKDRMQ---TKALGSLKFALQCAVDNISLSWD 474

Query: 428 L 430
           L
Sbjct: 475 L 475


>sp|P08739|NU5M_CHLRE NADH-ubiquinone oxidoreductase chain 5
           OS=Chlamydomonas reinhardtii GN=ND5 PE=3 SV=2
          Length = 546

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 22/135 (16%)
 Frame = +2

Query: 56  VCLQLVVSTWSMRANALARVL----------GSDTWYALWLWYAMHLPLLVLRGLRPMTL 205
           VC  L++  WS R +A+              G   W  LW+WY  HL  L    L   + 
Sbjct: 147 VCSYLLIGYWSHRLSAVKSAQKAILVNRVSDGLLMWGVLWVWY--HLGSLEYDLLNVYSA 204

Query: 206 SISLSCLILVGA-----------WRAFGF-GANHDAAIMHAICEVSGGTFSFIQAKERVQ 349
           S  +   IL+GA           W A    G    +A++HA   V+ G +  ++      
Sbjct: 205 SGFVGLSILIGAMGKSAQILFHVWLADAMEGPTPVSALIHAATLVTAGVYLLVRLHIH-D 263

Query: 350 DAFAQCIGGLLSVVA 394
           + F   +G L + +A
Sbjct: 264 EMFVIIVGSLTAFMA 278


>sp|P29920|NQO8_PARDE NADH-quinone oxidoreductase subunit 8
           OS=Paracoccus denitrificans GN=nqo8 PE=3 SV=1
          Length = 345

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +2

Query: 2   AKSQSLASKCLSNRLMSY------VCLQLVVSTWSMRANALARVLGSDTWYALWLWYAMH 163
           +K   LAS   + +++SY      + + +++ST SM   A+    G D     W W   H
Sbjct: 140 SKYPFLASLRSAAQMISYEVSLGLIIIGIIISTGSMNLTAIVEAHGGDYGLLNWYWLP-H 198

Query: 164 LPLLVL 181
           LP++VL
Sbjct: 199 LPMVVL 204


>sp|Q03613|YN84_CAEEL Probable G-protein coupled receptor ZC84.4
           OS=Caenorhabditis elegans GN=ZC84.4 PE=2 SV=2
          Length = 395

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 356 FAQCIGGLLSVVAQ---DVELNVSSWQLSQLCCT 448
           FA C+G L++++A     +EL   +WQ S + CT
Sbjct: 71  FALCVGDLMTMIAMLLLVIELVFGTWQFSSMVCT 104


>sp|Q28992|VIPR1_PIG Vasoactive intestinal polypeptide receptor 1
           OS=Sus scrofa GN=VIPR1 PE=2 SV=1
          Length = 458

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 206 IGSWV*GLSEQEEGDALHTTTIKHTKCLTQEPLPTHLPSLTK 81
           +GSW  GL +QEE D L    ++H +CL +  L       +K
Sbjct: 26  VGSWAVGL-QQEECDYLQMIKVQHKQCLEEAQLENETSGCSK 66


>sp|Q3ITK1|DNLJ_NATPD DNA ligase OS=Natronomonas pharaonis (strain
           DSM 2160 / ATCC 35678) GN=ligA PE=3 SV=1
          Length = 691

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -3

Query: 255 PKARHAPTSIKHDNEIDRVMGLRPLRTRRGRCIAYHNHKAYQVSDP----RTLANAFALI 88
           P  R  P   +  +E+D     R + T R   I +H+++ YQ++DP    R     F  +
Sbjct: 8   PYIRDPPLDFEPVDELDAASATRQVETLR-EAIRFHDYRYYQLADPVISDRAYDQLFERL 66

Query: 87  DQVET 73
           +++E+
Sbjct: 67  ERLES 71


>sp|P11622|ORF1_PLRVW Uncharacterized protein ORF1 OS=Potato
           leafroll virus (strain Wageningen) GN=ORF1 PE=3 SV=1
          Length = 639

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 65  QLVVSTWSMRANALARVLGSDTWYALWLWYAMHLPLLVLRGLRPMTLSISLSCLILVG 238
           +++ ++W+       +      W  + +W+ ++  L  L  L   T SI   CLIL+G
Sbjct: 105 EMLFASWNSVKEVSLKAASVTLWAIISIWFGLYWTLARLITLFLWTFSIEALCLILLG 162


>sp|Q6ZUJ4|CC062_HUMAN Uncharacterized protein C3orf62 OS=Homo
           sapiens GN=C3orf62 PE=2 SV=1
          Length = 267

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 447 VQHNCDSCQEETFSSTSWATTLNKPPMHCAKAS-WTLSLAWMNENV 313
           + H C  CQ+  F   +WA  ++K P     A   +L  A+ + N+
Sbjct: 200 LNHMCGHCQDSPFKEEAWALLMDKSPQKATDADPGSLKQAFDDHNI 245
tr_hit_id Q8H922
Definition tr|Q8H922|Q8H922_ORYSJ Putative uncharacterized protein OSJNBa0071K18.2 OS=Oryza sativa subsp. japonica
Align length 56
Score (bit) 85.5
E-value 1.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955175|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_G08, 5'
         (491 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8H922|Q8H922_ORYSJ Putative uncharacterized protein OSJNBa00...    86   1e-15
tr|Q7G2L9|Q7G2L9_ORYSJ Os10g0464500 protein OS=Oryza sativa subs...    86   1e-15
tr|A3C5J1|A3C5J1_ORYSJ Putative uncharacterized protein OS=Oryza...    86   1e-15
tr|A2Z8A0|A2Z8A0_ORYSI Putative uncharacterized protein OS=Oryza...    86   1e-15
tr|A7NZL5|A7NZL5_VITVI Chromosome chr6 scaffold_3, whole genome ...    84   4e-15
tr|A5BI34|A5BI34_VITVI Putative uncharacterized protein OS=Vitis...    84   4e-15
tr|Q948G7|Q948G7_ORYSA Putative uncharacterized protein OSJNBa00...    83   8e-15
tr|Q6K8E9|Q6K8E9_ORYSJ Os02g0806700 protein OS=Oryza sativa subs...    83   8e-15
tr|B8AEF5|B8AEF5_ORYSI Putative uncharacterized protein OS=Oryza...    83   8e-15
tr|A3ACH0|A3ACH0_ORYSJ Putative uncharacterized protein OS=Oryza...    83   8e-15
tr|Q9FF49|Q9FF49_ARATH Retroelement pol polyprotein-like OS=Arab...    82   1e-14
tr|Q8L849|Q8L849_ARATH Putative uncharacterized protein At5g6071...    82   1e-14
tr|A7PI33|A7PI33_VITVI Chromosome chr13 scaffold_17, whole genom...    82   1e-14
tr|A5BTD1|A5BTD1_VITVI Putative uncharacterized protein OS=Vitis...    82   1e-14
tr|Q6K937|Q6K937_ORYSJ Os02g0619600 protein OS=Oryza sativa subs...    82   2e-14
tr|B8AFH9|B8AFH9_ORYSI Putative uncharacterized protein OS=Oryza...    82   2e-14
tr|A3A951|A3A951_ORYSJ Putative uncharacterized protein OS=Oryza...    82   2e-14
tr|A7QCT4|A7QCT4_VITVI Chromosome undetermined scaffold_79, whol...    81   3e-14
tr|A5B5Z1|A5B5Z1_VITVI Putative uncharacterized protein OS=Vitis...    81   3e-14
tr|Q9M1S2|Q9M1S2_ARATH Putative uncharacterized protein T5N23_14...    80   5e-14
tr|Q8H924|Q8H924_ORYSJ Putative uncharacterized protein OSJNBa00...    80   5e-14
tr|Q84WA3|Q84WA3_ARATH Putative uncharacterized protein At3g5478...    80   5e-14
tr|B6SXK5|B6SXK5_MAIZE Protein binding protein OS=Zea mays PE=2 ...    80   5e-14
tr|A3C5J3|A3C5J3_ORYSJ Putative uncharacterized protein OS=Oryza...    80   5e-14
tr|A2Z8A2|A2Z8A2_ORYSI Putative uncharacterized protein OS=Oryza...    80   5e-14
tr|Q9ZV10|Q9ZV10_ARATH Putative retroelement pol polyprotein OS=...    79   9e-14
tr|Q8S9I2|Q8S9I2_ARATH At2g38970/T7F6.14 OS=Arabidopsis thaliana...    79   9e-14
tr|Q10RY0|Q10RY0_ORYSJ Os03g0142500 protein OS=Oryza sativa subs...    79   1e-13
tr|Q6YZC1|Q6YZC1_ORYSJ Histone deacetylase HD2-like protein OS=O...    79   1e-13
tr|B8BAE9|B8BAE9_ORYSI Putative uncharacterized protein OS=Oryza...    78   2e-13

>tr|Q8H922|Q8H922_ORYSJ Putative uncharacterized protein
           OSJNBa0071K18.2 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0071K18.2 PE=4 SV=1
          Length = 731

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNV 415
           AFGFGA+HD+  MH+I E+SGGTFSFI A   +QDAFAQCIGGLLSVVAQ++ L+V
Sbjct: 410 AFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGLLSVVAQELRLSV 465


>tr|Q7G2L9|Q7G2L9_ORYSJ Os10g0464500 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0464500 PE=4 SV=1
          Length = 719

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNV 415
           AFGFGA+HD+  MH+I E+SGGTFSFI A   +QDAFAQCIGGLLSVVAQ++ L+V
Sbjct: 410 AFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGLLSVVAQELRLSV 465


>tr|A3C5J1|A3C5J1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_030563 PE=4 SV=1
          Length = 654

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNV 415
           AFGFGA+HD+  MH+I E+SGGTFSFI A   +QDAFAQCIGGLLSVVAQ++ L+V
Sbjct: 333 AFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGLLSVVAQELRLSV 388


>tr|A2Z8A0|A2Z8A0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33939 PE=4 SV=1
          Length = 654

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNV 415
           AFGFGA+HD+  MH+I E+SGGTFSFI A   +QDAFAQCIGGLLSVVAQ++ L+V
Sbjct: 333 AFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGLLSVVAQELRLSV 388


>tr|A7NZL5|A7NZL5_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024560001
           PE=4 SV=1
          Length = 729

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 4/68 (5%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNVS--- 418
           AFGFG +HDA  MHAI E SGGTFSFI+A+  +QDAFAQCIGGLLSVV Q++ + V    
Sbjct: 424 AFGFGTDHDATSMHAISETSGGTFSFIEAEGVIQDAFAQCIGGLLSVVVQELRVGVECVH 483

Query: 419 -SWQLSQL 439
            S QLS +
Sbjct: 484 PSLQLSSI 491


>tr|A5BI34|A5BI34_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037547 PE=4 SV=1
          Length = 1324

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 4/68 (5%)
 Frame = +2

Query: 248 AFGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNVS--- 418
           AFGFG +HDA  MHAI E SGGTFSFI+A+  +QDAFAQCIGGLLSVV Q++ + V    
Sbjct: 424 AFGFGTDHDATSMHAISETSGGTFSFIEAEGVIQDAFAQCIGGLLSVVVQELRVGVECVH 483

Query: 419 -SWQLSQL 439
            S QLS +
Sbjct: 484 PSLQLSSI 491


>tr|Q948G7|Q948G7_ORYSA Putative uncharacterized protein
           OSJNBa0049O12.7 OS=Oryza sativa GN=OSJNBa0049O12.7 PE=4
           SV=1
          Length = 714

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +2

Query: 251 FGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNVSS 421
           FGFGA+HD+  +H+I + SGGTFSFI+ +  +QDAFAQCIGGLLSVVAQD+ + V S
Sbjct: 417 FGFGADHDSVSLHSISQTSGGTFSFIETEAAIQDAFAQCIGGLLSVVAQDLHVKVES 473


>tr|Q6K8E9|Q6K8E9_ORYSJ Os02g0806700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1111_C07.20 PE=2 SV=1
          Length = 723

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +2

Query: 251 FGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNVSS 421
           FGFGA+HD+  +H+I + SGGTFSFI+ +  +QDAFAQCIGGLLSVVAQD+ + V S
Sbjct: 426 FGFGADHDSVSLHSISQTSGGTFSFIETEAAIQDAFAQCIGGLLSVVAQDLHVKVES 482


>tr|B8AEF5|B8AEF5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09355 PE=4 SV=1
          Length = 723

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +2

Query: 251 FGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNVSS 421
           FGFGA+HD+  +H+I + SGGTFSFI+ +  +QDAFAQCIGGLLSVVAQD+ + V S
Sbjct: 426 FGFGADHDSVSLHSISQTSGGTFSFIETEAAIQDAFAQCIGGLLSVVAQDLHVKVES 482


>tr|A3ACH0|A3ACH0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008492 PE=4 SV=1
          Length = 750

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +2

Query: 251 FGFGANHDAAIMHAICEVSGGTFSFIQAKERVQDAFAQCIGGLLSVVAQDVELNVSS 421
           FGFGA+HD+  +H+I + SGGTFSFI+ +  +QDAFAQCIGGLLSVVAQD+ + V S
Sbjct: 453 FGFGADHDSVSLHSISQTSGGTFSFIETEAAIQDAFAQCIGGLLSVVAQDLHVKVES 509