NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954993
Clone id TST39A01NGRL0021_O18
Library
Length 265
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_O18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATCAGGCGAAGGTCTTTACGAGGGCTTGGATTGGCTCTCTGGTAACATTGCCAGCAAGGG
TTAGGAGAAGGTTTCCTAGTAAACATGAACTTTTTTGAAGATCTTGCTTAGGGAATTTCA
TATGAGACTGATTGTTGAATTATCATGCGAGTAAGTTATGTATCTGGTCATGACATTGGT
TGTGTTTGCCTTCTGGGGACAAACTCATGTTGAAATATCATGCTTGACAGCTTGTTATGA
TGTCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q06396
Definition sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica
Align length 14
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954993|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_O18, 5'
         (230 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa s...    32   1.3  
sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota ...    32   1.3  
sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis th...    32   1.3  
sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 ...    30   2.9  
sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa s...    30   2.9  
sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN...    30   2.9  
sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 OS=Catharanthus r...    30   2.9  
sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata...    30   3.8  
sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 2 OS=Arabidopsis th...    30   3.8  
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 OS=Chlamydomonas ...    30   5.0  

>sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa
           subsp. japonica GN=Os01g0813400 PE=2 SV=3
          Length = 181

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS NIASK
Sbjct: 167 YEGLDWLSNNIASK 180


>sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota
           GN=ARF1 PE=2 SV=2
          Length = 181

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS NIASK
Sbjct: 167 YEGLDWLSNNIASK 180


>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis
           thaliana GN=ARF1 PE=1 SV=2
          Length = 181

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS NIASK
Sbjct: 167 YEGLDWLSNNIASK 180


>sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1
           PE=2 SV=2
          Length = 181

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS NIA+K
Sbjct: 167 YEGLDWLSSNIATK 180


>sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa
           subsp. japonica GN=ARF PE=2 SV=2
          Length = 181

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS NIA+K
Sbjct: 167 YEGLDWLSNNIANK 180


>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko
           GN=ARF1 PE=2 SV=3
          Length = 181

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS NI+SK
Sbjct: 167 YEGLDWLSNNISSK 180


>sp|O23778|ARF1_CATRO ADP-ribosylation factor 1 OS=Catharanthus
           roseus GN=ARF1 PE=2 SV=3
          Length = 181

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS NIA+K
Sbjct: 167 YEGLDWLSNNIANK 180


>sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata
           GN=ARF PE=2 SV=3
          Length = 181

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGL+WLS NIASK
Sbjct: 167 YEGLEWLSNNIASK 180


>sp|Q9SRC3|ARF2_ARATH ADP-ribosylation factor 2 OS=Arabidopsis
           thaliana GN=ARF2-A PE=2 SV=3
          Length = 181

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS NIA K
Sbjct: 167 YEGLDWLSNNIAGK 180


>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 OS=Chlamydomonas
           reinhardtii GN=ARF1 PE=2 SV=2
          Length = 181

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 3   YEGLDWLSGNIASK 44
           YEGLDWLS N+A+K
Sbjct: 167 YEGLDWLSNNLANK 180
tr_hit_id Q677H6
Definition tr|Q677H6|Q677H6_HYAOR ADP-ribosylation factor (Fragment) OS=Hyacinthus orientalis
Align length 15
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954993|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_O18, 5'
         (230 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q677H6|Q677H6_HYAOR ADP-ribosylation factor (Fragment) OS=Hya...    34   4.2  
tr|Q677C8|Q677C8_HYAOR ADP-ribosylation factor (Fragment) OS=Hya...    34   4.2  
tr|Q8W4Z3|Q8W4Z3_GOSHI ADP-ribosylation factor (ADP-ribosylation...    33   9.3  
tr|Q84TR7|Q84TR7_GOSHI ARF1-like GTP-binding protein OS=Gossypiu...    33   9.3  
tr|Q3HVL9|Q3HVL9_SOLTU ARF-like small GTPase-like protein OS=Sol...    33   9.3  

>tr|Q677H6|Q677H6_HYAOR ADP-ribosylation factor (Fragment)
           OS=Hyacinthus orientalis GN=ARF PE=2 SV=1
          Length = 199

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   YEGLDWLSGNIASKG 47
           YEGLDWLS NIASKG
Sbjct: 185 YEGLDWLSNNIASKG 199


>tr|Q677C8|Q677C8_HYAOR ADP-ribosylation factor (Fragment)
           OS=Hyacinthus orientalis GN=ARF PE=2 SV=1
          Length = 145

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   YEGLDWLSGNIASKG 47
           YEGLDWLS NIASKG
Sbjct: 131 YEGLDWLSNNIASKG 145


>tr|Q8W4Z3|Q8W4Z3_GOSHI ADP-ribosylation factor (ADP-ribosylation
           factor 1) OS=Gossypium hirsutum GN=ARF1 PE=2 SV=1
          Length = 181

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   YEGLDWLSGNIASKG 47
           YEGLDWLS NIA+KG
Sbjct: 167 YEGLDWLSNNIANKG 181


>tr|Q84TR7|Q84TR7_GOSHI ARF1-like GTP-binding protein OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 181

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   YEGLDWLSGNIASKG 47
           YEGLDWLS NIA+KG
Sbjct: 167 YEGLDWLSNNIANKG 181


>tr|Q3HVL9|Q3HVL9_SOLTU ARF-like small GTPase-like protein
           OS=Solanum tuberosum PE=2 SV=1
          Length = 181

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   YEGLDWLSGNIASKG 47
           YEGLDWLS NIA+KG
Sbjct: 167 YEGLDWLSNNIANKG 181