DK954980 |
Clone id |
TST39A01NGRL0021_O05 |
Library |
TST39 |
Length |
640 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_O05. 5' end sequence. |
Accession |
DK954980 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL517Contig1 |
Sequence |
TGCTTGGTTCCCCAATGGCCTTGGATGTGTTGGAGCAGATCCAGGAACAATGCTGCCATG ACGACCTTCTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGAGGGAAAATGCAGCAGATG AGGTCGTCGCTCCTCAGCAGCACGAGGTGGACACCTTCTTGAGAGAGGCCGTGAACTCTC GCAACCGTATCACAGTTTTGAGGCTGGAGCAAGAGATTGAGAGATTTGCACGGAATATGT CCGAGCTGGACCTTCTCCTCAAGCCCATGCAGTCTTCCTATGAACGCCTTGCTGCACATC GCATTGCTCAGCATTATGGCCTGCAGTCAATGGTTGTGAGTGCTTCATTTCCAAAAGTCT CACGAATTCTGCTGGTGAAAACTTCAGAAACCAGGTTGCCTTCAGTAAGGCTTGCAGATA TTCCACTTGAAAGCTTGGCTACAGATAAGCCTGTTTCTGCTCCTAATGAGAAGATTGCTA TCAAGCAAAGGGCAAGCAGGGTGTCTAATGGTGAGGGATTGAACGGGTCCGCTGAATCAG GGAGAAATCCTCCTAAGACGATGGAGGAAAGAGAGGAAGAGTATGACAAAGCTAGGGCGA GGATCTTTAACAGTGGTGATTCGGCCAATGCTTTCAATGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q80TM6 |
Definition |
sp|Q80TM6|R3HD2_MOUSE R3H domain-containing protein 2 OS=Mus musculus |
Align length |
154 |
Score (bit) |
66.2 |
E-value |
1.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SL97 |
Definition |
tr|A9SL97|A9SL97_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
176 |
Score (bit) |
156.0 |
E-value |
1.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954980|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_O05, 5' (640 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SL97|A9SL97_PHYPA Predicted protein OS=Physcomitrella paten... 156 1e-36 tr|A9SVC8|A9SVC8_PHYPA Predicted protein OS=Physcomitrella paten... 155 2e-36 tr|A7QLJ1|A7QLJ1_VITVI Chromosome undetermined scaffold_119, who... 128 3e-28 tr|A2Q6F7|A2Q6F7_MEDTR Single-stranded nucleic acid binding R3H ... 123 1e-26 tr|Q9SG83|Q9SG83_ARATH T7M13.15 protein (Putative uncharacterize... 122 1e-26 tr|Q3EB95|Q3EB95_ARATH Uncharacterized protein At3g10770.2 OS=Ar... 122 1e-26 tr|Q8LBM0|Q8LBM0_ARATH Putative uncharacterized protein OS=Arabi... 121 4e-26 tr|A5AMT9|A5AMT9_VITVI Putative uncharacterized protein (Chromos... 121 4e-26 tr|Q652Q6|Q652Q6_ORYSJ cDNA clone:J013160I10, full insert sequen... 115 2e-24 tr|Q9LET8|Q9LET8_ARATH Putative uncharacterized protein T8M16_10... 114 4e-24 tr|Q9FF64|Q9FF64_ARATH Gb|AAF19572.1 OS=Arabidopsis thaliana PE=... 111 3e-23 tr|Q93YN3|Q93YN3_ARATH Putative uncharacterized protein MUG13.4 ... 111 3e-23 tr|B6T781|B6T781_MAIZE Nucleic acid binding protein OS=Zea mays ... 111 3e-23 tr|B4FSY1|B4FSY1_MAIZE Putative uncharacterized protein OS=Zea m... 111 3e-23 tr|B4G1B9|B4G1B9_MAIZE Putative uncharacterized protein OS=Zea m... 110 6e-23 tr|A9NUZ4|A9NUZ4_PICSI Putative uncharacterized protein OS=Picea... 110 6e-23 tr|B4FH94|B4FH94_MAIZE Putative uncharacterized protein OS=Zea m... 110 9e-23 tr|Q8LD07|Q8LD07_ARATH Putative uncharacterized protein OS=Arabi... 109 2e-22 tr|O22209|O22209_ARATH Expressed protein OS=Arabidopsis thaliana... 107 5e-22 tr|A5AV15|A5AV15_VITVI Putative uncharacterized protein OS=Vitis... 107 8e-22 tr|Q84PA5|Q84PA5_ORYSJ Os05g0411600 protein OS=Oryza sativa subs... 105 2e-21 tr|A2Y4N0|A2Y4N0_ORYSI Putative uncharacterized protein OS=Oryza... 105 2e-21 tr|A2Z474|A2Z474_ORYSI Putative uncharacterized protein OS=Oryza... 101 3e-20 tr|Q1ANZ5|Q1ANZ5_MAIZE DIP1 OS=Zea mays PE=2 SV=1 100 6e-20 tr|A3C1N0|A3C1N0_ORYSJ Putative uncharacterized protein OS=Oryza... 97 6e-19 tr|B3VWX8|B3VWX8_POPTN Single-stranded nucleic acid binding R3H ... 94 7e-18 tr|B3VWX6|B3VWX6_POPTN Single-stranded nucleic acid binding R3H ... 94 7e-18 tr|B3VWX5|B3VWX5_POPTN Single-stranded nucleic acid binding R3H ... 94 7e-18 tr|B3VWX4|B3VWX4_POPTN Single-stranded nucleic acid binding R3H ... 94 7e-18 tr|B3VWV8|B3VWV8_POPTN Single-stranded nucleic acid binding R3H ... 94 7e-18
>tr|A9SL97|A9SL97_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165532 PE=4 SV=1 Length = 659
Score = 156 bits (394), Expect = 1e-36 Identities = 95/176 (53%), Positives = 117/176 (66%), Gaps = 7/176 (3%) Frame = +3
Query: 102 RENAADEVVAPQQHEVDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSS 278 R ++ D P Q VD FL+EA+ N R+R+T+LRLEQE+ERF RN S L +PM SS Sbjct: 231 RTDSIDAASGPDQ--VDGFLKEALQNPRDRLTILRLEQEVERFIRNPSLQILEFQPMPSS 288
Query: 279 YERLAAHRIAQHYGLQSMVVSASFPKVSRILLVKTSETRLPSVRLADIPLESLATD---K 449 Y RLAAHR+AQHY LQSMVV + +RI+ KTSETR PS+RL DIP+ LA D K Sbjct: 289 YLRLAAHRVAQHYNLQSMVVDGGSAEGTRIVAKKTSETRFPSLRLVDIPVVPLAGDQEEK 348
Query: 450 PVSAP--NEKIAIKQRASRVSNGEGLNGSAESGR-NPPKTMEEREEEYDKARARIF 608 V AP K+AIKQR + G SG+ NP K++EER+EEY+KARARIF Sbjct: 349 VVVAPAVPSKVAIKQRPLKGGRSNGFGPGGSSGKLNPSKSVEERKEEYNKARARIF 404
>tr|A9SVC8|A9SVC8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_84479 PE=4 SV=1 Length = 465
Score = 155 bits (392), Expect = 2e-36 Identities = 95/176 (53%), Positives = 116/176 (65%), Gaps = 7/176 (3%) Frame = +3
Query: 102 RENAADEVVAPQQHEVDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSS 278 R +AAD P Q VD FL+EA+ N R+R+T+LRLEQE+ERF RN S L +PM SS Sbjct: 66 RTDAADAARGPDQ--VDGFLKEALQNPRDRLTILRLEQEVERFIRNPSLQVLEFQPMPSS 123
Query: 279 YERLAAHRIAQHYGLQSMVVSASFPKVSRILLVKTSETRLPSVRLADIPLESLATDKPVS 458 Y RLAAHR+AQHY LQSMVV + RI+ KTSETR PS+RL DIP+ A D+ Sbjct: 124 YLRLAAHRVAQHYYLQSMVVDGGSAEGMRIVARKTSETRFPSLRLVDIPVVPQAGDQEEK 183
Query: 459 AP-----NEKIAIKQRASRVSNGEGLNGSAESGR-NPPKTMEEREEEYDKARARIF 608 A K+AIKQR ++ S GL GR NP K++EER+EEY+KARARIF Sbjct: 184 AAMLPVLPTKVAIKQRPAKGSRSNGLGIGGNGGRLNPSKSVEERKEEYNKARARIF 239
>tr|A7QLJ1|A7QLJ1_VITVI Chromosome undetermined scaffold_119, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001638001 PE=4 SV=1 Length = 460
Score = 128 bits (321), Expect = 3e-28 Identities = 77/162 (47%), Positives = 107/162 (66%), Gaps = 4/162 (2%) Frame = +3
Query: 141 HEVDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSSYERLAAHRIAQHY 317 ++VD FLREA+ N R R+++LR+EQ+IE+F + ++ L + + +SY RLAAHR+AQHY Sbjct: 66 NQVDQFLREALQNPRERLSILRMEQDIEKFIHDPTQQQLEFQQLPTSYLRLAAHRVAQHY 125
Query: 318 GLQSMV-VSASFP--KVSRILLVKTSETRLPSVRLADIPLESLATDKPVSAPNEKIAIKQ 488 LQSMV + + P S+I++ KTSE RLP +RLADIP+ D V K+AIKQ Sbjct: 126 SLQSMVLLDNNLPDGSGSKIIVRKTSECRLPLIRLADIPVSLPPEDGGVI----KVAIKQ 181
Query: 489 RASRVSNGEGLNGSAESGRNPPKTMEEREEEYDKARARIFNS 614 R + S S N K++EER+EEY++ARARIFNS Sbjct: 182 RPQKRSQNVSCANSHSFKANNSKSVEERKEEYNRARARIFNS 223
>tr|A2Q6F7|A2Q6F7_MEDTR Single-stranded nucleic acid binding R3H OS=Medicago truncatula GN=MtrDRAFT_AC183371g11v1 PE=4 SV=1 Length = 353
Score = 123 bits (308), Expect = 1e-26 Identities = 72/160 (45%), Positives = 103/160 (64%), Gaps = 1/160 (0%) Frame = +3
Query: 147 VDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSSYERLAAHRIAQHYGL 323 VD FL EA+ N R+R+T+LR+E +I++F N + + SSY RLAAHR+AQHYG+ Sbjct: 21 VDPFLVEALQNPRHRLTILRMELDIQKFMNNADQQHFEFQHFPSSYLRLAAHRVAQHYGM 80
Query: 324 QSMVVSASFPKVSRILLVKTSETRLPSVRLADIPLESLATDKPVSAPNEKIAIKQRASRV 503 Q+MV S+IL+ K E++ P VRL++IP + L +K + +KI I+ R + Sbjct: 81 QTMVQDIGLDGQSKILVRKLPESKYPVVRLSEIPAKQLDNEK---SELKKIVIQSRPHKT 137
Query: 504 SNGEGLNGSAESGRNPPKTMEEREEEYDKARARIFNSGDS 623 S G N S + G NP +++EER+EEYD+ARARIFN S Sbjct: 138 SL-NGANDSTKKG-NPLRSVEERKEEYDRARARIFNGSTS 175
>tr|Q9SG83|Q9SG83_ARATH T7M13.15 protein (Putative uncharacterized protein At3g10770) OS=Arabidopsis thaliana GN=At3g10770 PE=2 SV=1 Length = 333
Score = 122 bits (307), Expect = 1e-26 Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 6/168 (3%) Frame = +3
Query: 147 VDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSSYERLAAHRIAQHYGL 323 VD FL EA+ N R+R+T+LR+E +I++F +N +L P +SY RLAAHR+AQHYGL Sbjct: 11 VDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHRVAQHYGL 70
Query: 324 QSMVV----SASFPKVSRILLVKTSETRLPSVRLADIPLESLATDKPVSAPNEKIAIKQR 491 +M + A +RIL+ KT+E+R P V L++IP++ +P KIAIK R Sbjct: 71 VTMALDNGTGAGDGSDNRILVTKTAESRFPYVCLSEIPVKQPENGRP---EGFKIAIKPR 127
Query: 492 ASRVSNGEGLNGSAES-GRNPPKTMEEREEEYDKARARIFNSGDSANA 632 R G G GS +N +++EER+EEYDKARARIFNS S+++ Sbjct: 128 PKR---GSGCGGSGSGVQQNLLRSVEERKEEYDKARARIFNSPSSSDS 172
>tr|Q3EB95|Q3EB95_ARATH Uncharacterized protein At3g10770.2 OS=Arabidopsis thaliana GN=At3g10770 PE=4 SV=1 Length = 325
Score = 122 bits (307), Expect = 1e-26 Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 6/168 (3%) Frame = +3
Query: 147 VDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSSYERLAAHRIAQHYGL 323 VD FL EA+ N R+R+T+LR+E +I++F +N +L P +SY RLAAHR+AQHYGL Sbjct: 11 VDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHRVAQHYGL 70
Query: 324 QSMVV----SASFPKVSRILLVKTSETRLPSVRLADIPLESLATDKPVSAPNEKIAIKQR 491 +M + A +RIL+ KT+E+R P V L++IP++ +P KIAIK R Sbjct: 71 VTMALDNGTGAGDGSDNRILVTKTAESRFPYVCLSEIPVKQPENGRP---EGFKIAIKPR 127
Query: 492 ASRVSNGEGLNGSAES-GRNPPKTMEEREEEYDKARARIFNSGDSANA 632 R G G GS +N +++EER+EEYDKARARIFNS S+++ Sbjct: 128 PKR---GSGCGGSGSGVQQNLLRSVEERKEEYDKARARIFNSPSSSDS 172
>tr|Q8LBM0|Q8LBM0_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 333
Score = 121 bits (303), Expect = 4e-26 Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 6/168 (3%) Frame = +3
Query: 147 VDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSSYERLAAHRIAQHYGL 323 VD FL EA+ N R+R+T+LR+E +I++F +N +L P +SY RLAAHR+AQHYGL Sbjct: 11 VDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHRVAQHYGL 70
Query: 324 QSMVV----SASFPKVSRILLVKTSETRLPSVRLADIPLESLATDKPVSAPNEKIAIKQR 491 +M + +RIL+ KT+E+R P V L++IP++ +P KIAIK R Sbjct: 71 VTMALDNGTGTGDGSDNRILVTKTAESRFPYVCLSEIPVKQPENGRP---EGFKIAIKPR 127
Query: 492 ASRVSNGEGLNGSAES-GRNPPKTMEEREEEYDKARARIFNSGDSANA 632 R G G GS +N +++EER+EEYDKARARIFNS S+++ Sbjct: 128 PKR---GSGCGGSGSGVQQNLLRSVEERKEEYDKARARIFNSPSSSDS 172
>tr|A5AMT9|A5AMT9_VITVI Putative uncharacterized protein (Chromosome chr8 scaffold_29, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00023292001 PE=4 SV=1 Length = 356
Score = 121 bits (303), Expect = 4e-26 Identities = 73/166 (43%), Positives = 114/166 (68%), Gaps = 4/166 (2%) Frame = +3
Query: 147 VDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSSYERLAAHRIAQHYGL 323 VD FL EA+ N R+R+T+LR+E +I+RF +N + + +SY RLAAHR+A HYGL Sbjct: 21 VDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQQFEFQHFPTSYLRLAAHRVALHYGL 80
Query: 324 QSMVVSASFPKV-SRILLVKTSETRLPSVRLADIPLESLATDKPVSAPNEKIAIKQRASR 500 Q+MV S + +RI+++KT+E+R P++ L++IP + +KP + KIAI++R ++ Sbjct: 81 QTMVQDNSVDGLANRIVVMKTAESRCPAICLSEIPAKQSENEKP---EHIKIAIRRRPNK 137
Query: 501 VSNGEGLNGSAESG--RNPPKTMEEREEEYDKARARIFNSGDSANA 632 S LN + E+G R+ +T+EER+EEYDKARARIF++ S ++ Sbjct: 138 TS----LNETNETGIKRSSVRTVEERKEEYDKARARIFSTPASPDS 179
>tr|Q652Q6|Q652Q6_ORYSJ cDNA clone:J013160I10, full insert sequence OS=Oryza sativa subsp. japonica GN=OJ1003_C09.7-1 PE=2 SV=1 Length = 455
Score = 115 bits (288), Expect = 2e-24 Identities = 75/166 (45%), Positives = 110/166 (66%), Gaps = 5/166 (3%) Frame = +3
Query: 144 EVDTFLREAVNS-RNRITVLRLEQEIERFARNMSELDLLLKPMQSSYERLAAHRIAQHYG 320 ++D FLREA+ R R++VLR+EQ+I +F + ++ + + +SY RLAAHR+AQHY Sbjct: 59 QLDQFLREALEKPRERLSVLRMEQDILKFIHDPTQTEFDFHGLPTSYLRLAAHRLAQHYF 118
Query: 321 LQSMVVSAS-FP--KVSRILLVKTS-ETRLPSVRLADIPLESLATDKPVSAPNEKIAIKQ 488 LQS+ + + P SRI+L KTS E RLP+VRL+DI + +L D+ S K+AIKQ Sbjct: 119 LQSIALQDNGLPDGSGSRIILRKTSAECRLPAVRLSDIQV-NLPQDESNSI--AKVAIKQ 175
Query: 489 RASRVSNGEGLNGSAESGRNPPKTMEEREEEYDKARARIFNSGDSA 626 R + + +G+ S N K++EER+EEY+KARARIFN+ S+ Sbjct: 176 RPQKHYHNNSSSGAHSSRANLQKSVEERKEEYNKARARIFNNNSSS 221
>tr|Q9LET8|Q9LET8_ARATH Putative uncharacterized protein T8M16_10 (AT3g56680/T8M16_10) (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=T8M16_10 PE=2 SV=1 Length = 353
Score = 114 bits (286), Expect = 4e-24 Identities = 68/165 (41%), Positives = 105/165 (63%), Gaps = 2/165 (1%) Frame = +3
Query: 123 VVAPQQHEVDTFLREAV-NSRNRITVLRLEQEIERFARNMSELDLLLKPMQSSYERLAAH 299 V+ VD FL EA+ NSR+R+T+LR+E +++R +N + + +SY RLAAH Sbjct: 16 VIGDYGFNVDPFLVEALHNSRHRLTILRMELDVQRLLQNPEQQQFEFQHFPTSYLRLAAH 75
Query: 300 RIAQHYGLQSMV-VSASFPKVSRILLVKTSETRLPSVRLADIPLESLATDKPVSAPNEKI 476 R+A HYGL + V S + +RIL+ KT+E++ P+VRL++IP+ + + + K+ Sbjct: 76 RVANHYGLATAVQESGADGNENRILVTKTTESKFPAVRLSEIPVAKQSENGKFE--SRKV 133
Query: 477 AIKQRASRVSNGEGLNGSAESGRNPPKTMEEREEEYDKARARIFN 611 +IK R S+ +G G G E R P +++EER+EEYDKAR RIF+ Sbjct: 134 SIKTRPSK-GSGYGA-GDLEKNRGPLRSVEERKEEYDKARERIFS 176
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