DK954966 |
Clone id |
TST39A01NGRL0021_N15 |
Library |
TST39 |
Length |
610 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_N15. 5' end sequence. |
Accession |
DK954966 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL783Contig1 |
Sequence |
GCAACCCCATCACCAAATCATGGAGAAGGTTGCCCCATCTTGCAGAGATAGATCAATGGT TTGACGATGACACAGTACAAGCATTTGGGTTGAAGTACATTGCTGTATCTGGTACATATG AATTCCTCCTTCTCAATCACTGCGCGCCAAAGTCCCTTGCAAGCGAAGCCATACTAATGA CTTACAGCTCCGCATCCTCACAATGGCTTTGCGGGTTGCCTCTTATCATGCCTGTCGGAT GTAAGCTTCATAATGATACCATCCTTTCTTGGAACTCCAGGTTATATTCACTATGGATGC GGAAAGGAATTATAGTGATTTTTGCCTTCCTCAGAGACACTTGGACGGAGGTAGAAGTGC CGACGCTTAAATATCCGCTAACATTGTTGAAAGCTTTCTTAATGGTTGTTAGCGGTAGCT TGTACATGGTGGGTGGGGTAGGTCCTGTTTGGCACCATAATAATTACCGAGAGCAACCCA CAACTATTCGCATTTGGAAGTTGCTGGCGCCAGGCGATGAATGGGAGGAAGTGACAACAA TGCCCTCTCTAGTCTTTCGTGAATTTGAACAGTGTATTGACTTCGATTTTGTCCAGTGTT GGGGAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LFV5 |
Definition |
sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Arabidopsis thaliana |
Align length |
207 |
Score (bit) |
45.1 |
E-value |
0.0003 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TB91 |
Definition |
tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
192 |
Score (bit) |
57.8 |
E-value |
5.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954966|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_N15, 5' (610 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella paten... 58 5e-07 tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella paten... 56 1e-06 tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella paten... 51 6e-05 tr|Q9ZTZ0|Q9ZTZ0_PEA Stamina pistilloidia OS=Pisum sativum GN=St... 50 1e-04 tr|A9TTQ6|A9TTQ6_PHYPA Predicted protein OS=Physcomitrella paten... 49 3e-04 tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella paten... 47 7e-04 tr|Q84L18|Q84L18_PEA Stp-h4 OS=Pisum sativum PE=4 SV=1 47 9e-04 tr|Q84JN4|Q84JN4_PEA Stp-h2 (Stp-h3) OS=Pisum sativum PE=4 SV=1 47 0.001 tr|A9SVA4|A9SVA4_PHYPA Predicted protein OS=Physcomitrella paten... 47 0.001 tr|A9SR45|A9SR45_PHYPA Predicted protein OS=Physcomitrella paten... 47 0.001 tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea... 46 0.001 tr|A9TXI0|A9TXI0_PHYPA Predicted protein OS=Physcomitrella paten... 46 0.001 tr|Q5BMD2|Q5BMD2_MEDTR Stamina pistilloidia (Fragment) OS=Medica... 45 0.003 tr|A2Q633|A2Q633_MEDTR Cyclin-like F-box; Galactose oxidase, cen... 45 0.003 tr|A9RPC5|A9RPC5_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.004 tr|Q6QVX1|Q6QVX1_PEDGR Fimbriata (Fragment) OS=Pedicularis groen... 44 0.006 tr|A9TY82|A9TY82_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.006 tr|Q6QVX0|Q6QVX0_PAUTO Fimbriata (Fragment) OS=Paulownia tomento... 44 0.007 tr|A7P2M5|A7P2M5_VITVI Chromosome chr1 scaffold_5, whole genome ... 44 0.007 tr|A5BDR7|A5BDR7_VITVI Putative uncharacterized protein OS=Vitis... 44 0.007 tr|Q6QVX5|Q6QVX5_SYRVU Fimbriata (Fragment) OS=Syringa vulgaris ... 44 0.010 tr|Q6QVW9|Q6QVW9_MIMLE Fimbriata (Fragment) OS=Mimulus lewisii G... 44 0.010 tr|Q6QVW8|Q6QVW8_MIMGU Fimbriata (Fragment) OS=Mimulus guttatus ... 44 0.010 tr|Q6QVX2|Q6QVX2_SALCC Fimbriata (Fragment) OS=Salvia coccinea G... 43 0.012 tr|Q1KUZ9|Q1KUZ9_9ROSI Putative uncharacterized protein OS=Cleom... 43 0.012 tr|A9S5R2|A9S5R2_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.012 tr|A7PAG5|A7PAG5_VITVI Chromosome chr14 scaffold_9, whole genome... 43 0.012 tr|Q7XR72|Q7XR72_ORYSJ Os04g0668600 protein OS=Oryza sativa subs... 42 0.021 tr|Q6QVX3|Q6QVX3_VEROI Fimbriata (Fragment) OS=Verbena officinal... 42 0.021 tr|B8AW14|B8AW14_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.021
>tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_90500 PE=4 SV=1 Length = 371
Score = 57.8 bits (138), Expect = 5e-07 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 3/192 (1%) Frame = +3
Query: 3 NPITKSWRRLPHLAEIDQWFDDDTVQAFGLKYIAVSGTYEFLLLNHCAPKSLASEAILMT 182 NP+T+ WR+L + ++ W + G+ Y + T++ L+ ++ +E Sbjct: 132 NPMTQKWRQL---SPMNTWM----ISTVGMVYDDATATFKVLVCGRLENHTMITEV---- 180
Query: 183 YSSASSQW-LCGLPLIMPVGCKLHNDTILSWNSRLYSLWMRKGIIVIFAF--LRDTWTEV 353 Y S S W L G P K DT L + Y L + + ++ + TW EV Sbjct: 181 YDSQSDGWTLSGTPF---PARKYGGDTSLWCDGIFYCLTYPFSTLCLLSYDLSQGTWREV 237
Query: 354 EVPTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTIRIWKLLAPGDEWEEV 533 + + P ++ L+ G L +VGG+ ++ I+IW L EWEE+ Sbjct: 238 PI---RMPSPIMSPSLVESRGKLLLVGGLE--------EQEVFGIQIWSLDTVKQEWEEL 286
Query: 534 TTMPSLVFREFE 569 MPS + +EFE Sbjct: 287 ERMPSQLCKEFE 298
>tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_164284 PE=4 SV=1 Length = 648
Score = 56.2 bits (134), Expect = 1e-06 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 1/190 (0%) Frame = +3
Query: 3 NPITKSWRRLPHLAEIDQWFDDDTVQAFGLKYIAVSGTYEFLLLNHCAPKSLASEAILMT 182 NP+T+ WR+LP + + W + G+ Y + T+ L+ + +E Sbjct: 409 NPMTQKWRQLPRM---NTWM----ISTVGMAYDDATATFTVLVCGRLEDHIMITEV---- 457
Query: 183 YSSASSQW-LCGLPLIMPVGCKLHNDTILSWNSRLYSLWMRKGIIVIFAFLRDTWTEVEV 359 Y S S W L G P K D L + Y L + + ++ T EV Sbjct: 458 YDSKSDVWTLSGTPFSAR---KYGGDISLWCDGIFYCLTYPFSTLCLLSYDLSQGTWCEV 514
Query: 360 PTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTIRIWKLLAPGDEWEEVTT 539 P ++ P ++ L+ G+L +VGG+ ++ I+IWKL EW+E+ Sbjct: 515 P-IRMPSPIMSPALVESRGTLLLVGGLE--------EQELFGIQIWKLDTVKQEWQELER 565
Query: 540 MPSLVFREFE 569 MP + +EFE Sbjct: 566 MPLQLCKEFE 575
>tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_91322 PE=4 SV=1 Length = 393
Score = 50.8 bits (120), Expect = 6e-05 Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 8/195 (4%) Frame = +3
Query: 3 NPITKSWRRLPHLAEIDQWFDDDTVQAFGLKYIAVSGTYEFLLLNHCAPKSLASEAILMT 182 NP+T SWR+LP + + W D GL + Y+ ++ ++ A + ++ A+L T Sbjct: 153 NPVTSSWRKLPPM--LGGWRDG----LLGLVIDKQTCAYKIIVRSNLASVN-SNGAVLRT 205
Query: 183 --YSSASSQWLC--GLPLIMPVGCKLHNDTI--LSWNSRLYSLWMRKGIIVIFAF--LRD 338 Y S ++ W+C GL + G + ++W + R G+ ++A+ + Sbjct: 206 EVYDSTTNLWICTNGLEDGITTGYAYCKGVLYFMTWET-------RSGVYGVYAYNLEQG 258
Query: 339 TWTEVEVPTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTIRIWKLLAPGD 518 TW++V VP P + ++ L MVGG G H I +W+L P Sbjct: 259 TWSKVHVP---IPDFMTCPHVVECQERLLMVGGFGRRPHF-----VTEGICVWELQPPTR 310
Query: 519 EWEEVTTMPSLVFRE 563 +W V MP +FR+ Sbjct: 311 DWVVVQNMPEGLFRD 325
>tr|Q9ZTZ0|Q9ZTZ0_PEA Stamina pistilloidia OS=Pisum sativum GN=Stp PE=2 SV=1 Length = 443
Score = 50.1 bits (118), Expect = 1e-04 Identities = 36/159 (22%), Positives = 69/159 (43%) Frame = +3
Query: 129 LLNHCAPKSLASEAILMTYSSASSQWLCGLPLIMPVGCKLHNDTILSWNSRLYSLWMRKG 308 +++ A K+L+SE+ + S S W G +P C L + ++ + Y + Sbjct: 227 MISPYAVKNLSSESFHIDASGFYSIW--GTTSSLPRLCSLESGRMVYSQGKFYCMNCSPF 284
Query: 309 IIVIFAFLRDTWTEVEVPTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTI 488 ++ + +TW +++ P K+ L L+ +G L +V V N P + Sbjct: 285 SVLAYDIATNTWFKIQAPMRKF---LRSPNLVECNGKLLLVAAV-----EKNKLNVPKNL 336
Query: 489 RIWKLLAPGDEWEEVTTMPSLVFREFEQCIDFDFVQCWG 605 R+W L G+ W E MP ++ +F + + +C G Sbjct: 337 RVWSLQGCGNVWVETERMPQQLYVQFADMENGNGFECVG 375
>tr|A9TTQ6|A9TTQ6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_97006 PE=4 SV=1 Length = 780
Score = 48.5 bits (114), Expect = 3e-04 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 3/191 (1%) Frame = +3
Query: 3 NPITKSWRRLPHLAEIDQWFDDDTVQAFGLKYIAVSGTYEFLLLNHCAPKSLASEAILMT 182 NP+T W+ LP + I + V G+ V+ Y+ +++ + + L S + Sbjct: 542 NPLTTQWKHLPSMLYIKR------VHLLGMVVDKVTRHYKIVVVGTQSRQDLVSNTEV-- 593
Query: 183 YSSASSQW-LCGLPLIMPVGCKLHNDTILSWNSRLYSLWMRKGIIVIFAFLRDTWTEVEV 359 Y SA+ W + G L +L L +N W I+ + + +W E E+ Sbjct: 594 YESATGSWEITGRALGSFTSHRLVYCNGLFYNLSATRGWPVTLILHAYDIGQQSWRE-EI 652
Query: 360 PTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTIRIWKLLAP--GDEWEEV 533 + L+ GSL +VG + +++ +P IR+W+L G EW EV Sbjct: 653 RSAMLLNFQAPPSLVECQGSLLIVGRIS----EDSHFAKPKAIRLWELREKETGGEWVEV 708
Query: 534 TTMPSLVFREF 566 TMP + EF Sbjct: 709 VTMPPALLEEF 719
>tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_234671 PE=4 SV=1 Length = 462
Score = 47.4 bits (111), Expect = 7e-04 Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 2/194 (1%) Frame = +3
Query: 3 NPITKSWRRLPHLAEIDQWFDDDTVQAFGLKYIAVSGTYEFLLLNHCAPKSLASEAILMT 182 NP+TK W+ LP + I T+ G+ S +Y+ L+ ++ Sbjct: 182 NPMTKFWQHLPPMRFIK------TIHVVGMVNDRASKSYKILVAGLFFDEAHNGRLATEI 235
Query: 183 YSSASSQWLCGLPL--IMPVGCKLHNDTILSWNSRLYSLWMRKGIIVIFAFLRDTWTEVE 356 + S ++ W G IM KL + Y + ++ + R+ W EV Sbjct: 236 FCSQTNAWAVGGKPWPIMAAAWKLGAGYAVWSMGSFYCITFSPFGVIAYDIERNLWDEVH 295
Query: 357 VPTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTIRIWKLLAPGDEWEEVT 536 V + P ++ L+ G L MVGG N+ IRIW+L W E+ Sbjct: 296 V---RMPACIVSPSLVECQGRLLMVGGC----EEGNF----LGIRIWELERIKMVWVEIE 344
Query: 537 TMPSLVFREFEQCI 578 MP + REF + + Sbjct: 345 RMPRKLRREFVEML 358
>tr|Q84L18|Q84L18_PEA Stp-h4 OS=Pisum sativum PE=4 SV=1 Length = 443
Score = 47.0 bits (110), Expect = 9e-04 Identities = 34/159 (21%), Positives = 69/159 (43%) Frame = +3
Query: 129 LLNHCAPKSLASEAILMTYSSASSQWLCGLPLIMPVGCKLHNDTILSWNSRLYSLWMRKG 308 +++ A K+L+SE+ + S S W G +P C L + ++ + Y + Sbjct: 227 MISPYAVKNLSSESFHIDASGFYSIW--GTTSSLPRLCSLESGRMVYSQGKFYCMNCSPF 284
Query: 309 IIVIFAFLRDTWTEVEVPTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTI 488 ++ + +TW +++ P ++ L L+ +G L +V V + P ++ Sbjct: 285 SVLAYDIATNTWFKIQAPMRRF---LRSPNLVECNGKLLLVAAV-----EKSKLNVPKSL 336
Query: 489 RIWKLLAPGDEWEEVTTMPSLVFREFEQCIDFDFVQCWG 605 R+W L G W E MP ++ +F + + +C G Sbjct: 337 RVWSLQGCGSVWVETERMPQQLYVQFADMENGNGFECVG 375
>tr|Q84JN4|Q84JN4_PEA Stp-h2 (Stp-h3) OS=Pisum sativum PE=4 SV=1 Length = 441
Score = 46.6 bits (109), Expect = 0.001 Identities = 34/159 (21%), Positives = 68/159 (42%) Frame = +3
Query: 129 LLNHCAPKSLASEAILMTYSSASSQWLCGLPLIMPVGCKLHNDTILSWNSRLYSLWMRKG 308 +++ A K+L+SE+ + S S W G +P C L + ++ + Y + Sbjct: 225 MISPYAVKNLSSESFHIDASGFYSIW--GTTSSLPRLCSLESGRMVYSQGKFYCMNCSPF 282
Query: 309 IIVIFAFLRDTWTEVEVPTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTI 488 ++ + +TW +++ P ++ L L+ G L +V V + P ++ Sbjct: 283 SVLAYDIATNTWFKIQAPMRRF---LRSPNLVECKGKLLLVAAV-----EKSKLNVPKSL 334
Query: 489 RIWKLLAPGDEWEEVTTMPSLVFREFEQCIDFDFVQCWG 605 R+W L G W E MP ++ +F + + +C G Sbjct: 335 RVWSLQGCGSVWVETERMPQQLYVQFADMENGNGFECVG 373
>tr|A9SVA4|A9SVA4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_166753 PE=4 SV=1 Length = 463
Score = 46.6 bits (109), Expect = 0.001 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 1/186 (0%) Frame = +3
Query: 3 NPITKSWRRLPHLAEIDQWFDDDTVQAFGLKYIAVSGTYEFLLLNHCAPKSLASEAILMT 182 NP+T++ R+LP + + + G+ +Y+ L++ +SL S+ Sbjct: 194 NPMTRTQRKLPPMLHMKSPY------VVGMVMDREHRSYKILVVQD--GESLTSQV---- 241
Query: 183 YSSASSQWLCGLPLIMPVGCKLHNDTILSWNSRLYSLWMRKGI-IVIFAFLRDTWTEVEV 359 Y S S+ W L +P L T N LYS+ ++ F + TW +V+V Sbjct: 242 YDSRSNSWY--LTSSLPSRVALITGTAFI-NGYLYSMSFGATTGVLAFDVNKGTWDQVKV 298
Query: 360 PTLKYPLTLLKAFLMVVSGSLYMVGGVGPVWHHNNYREQPTTIRIWKLLAPGDEWEEVTT 539 K PL L+ L+ G L MVGGV + + R ++R+W+L EW E Sbjct: 299 ---KMPLALICPQLIGHRGQLLMVGGVE---EYGSLR----SVRLWRLDITRSEWVEFQC 348
Query: 540 MPSLVF 557 MP +F Sbjct: 349 MPETLF 354
>tr|A9SR45|A9SR45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233823 PE=4 SV=1 Length = 534
Score = 46.6 bits (109), Expect = 0.001 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 8/128 (6%) Frame = +3
Query: 3 NPITKSWRRLPHLAEIDQWFDDDTVQAFGLKYIAV---SGTYEFLLLNHCAPKSLASEAI 173 NP+TKSWR LP L D +D + + I V S +Y+ +L++ + + + Sbjct: 291 NPVTKSWRELPPLDVED---PEDFMWYLAMVSIVVDEHSNSYKVILVSQTSYEPYNASWR 347
Query: 174 LMTYSSASSQWLCGLPLIMPVGCKLHNDTILSW-----NSRLYSLWMRKGIIVIFAFLRD 338 + YSS + W P +G +HNDT W N L+ + + + + LR Sbjct: 348 TLVYSSLTKDW--SRPHSHYLGADVHNDTCEMWTPVECNGVLFENFGTE-YVWTYDLLRG 404
Query: 339 TWTEVEVP 362 TW +E+P Sbjct: 405 TWRHIELP 412
|