DK954898 |
Clone id |
TST39A01NGRL0021_K19 |
Library |
TST39 |
Length |
548 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_K19. 5' end sequence. |
Accession |
DK954898 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1313Contig1 |
Sequence |
CGGAAATTTCGTGTTCGGCTGTTCTGGACAGGGACTTCCTCATTAGCGGCCTTCTGTAGC TCGCTATGCCGAAGTCCAAGCGCAACAAGCTAGTGACATTGTCTAAAACCAAAAAGAAAG GGAGGGAGAGCAAGGAATCATTAGTGAAGACTGTAAGGGAATGTCTTGAAGAGTACTCGT CATTGTACATCTTCGCATTTGAGAATATGCGGAATACAAAGTTCAAAGAGTTCCGTGACA GCCTTAAAAGTAGCAGCAGATTTTTTCTCGGCTCCAACAAAGTCTTGCAATTAGCTCTTG GAAGGACAACAGCAGAGGAAGTTAAGGATGACCTCCATAAAGCCAGTGAGATGCTACATG GAGAGTGTGGTCTTTTTTTGACAAATTTGCCTAAAGAAGAGGTTGAAAGAATCTTTGAGG AGTTTGAAGAGCATGATTTTGGGAAGACTGGAAGTCTTGCTACAGAGACGGTTGAATTGA CAGAGGGGCCTTTGGAACAGTTTAGTCATGACATGGAACCTTTTTTGAGGAAGCAGGGAC TTCCAGTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A4FV84 |
Definition |
sp|A4FV84|MRT4_BOVIN mRNA turnover protein 4 homolog OS=Bos taurus |
Align length |
160 |
Score (bit) |
153.0 |
E-value |
6.0e-37 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P0E2 |
Definition |
tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
161 |
Score (bit) |
244.0 |
E-value |
2.0e-63 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954898|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_K19, 5' (548 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea... 244 2e-63 tr|A9U247|A9U247_PHYPA Predicted protein OS=Physcomitrella paten... 239 5e-62 tr|A9SYQ4|A9SYQ4_PHYPA Predicted protein OS=Physcomitrella paten... 239 5e-62 tr|Q3HVP9|Q3HVP9_SOLTU Putative uncharacterized protein OS=Solan... 218 2e-55 tr|A9PEW5|A9PEW5_POPTR Putative uncharacterized protein OS=Popul... 216 5e-55 tr|A7PYW1|A7PYW1_VITVI Chromosome chr12 scaffold_38, whole genom... 214 2e-54 tr|A2Q489|A2Q489_MEDTR Ribosomal protein L10 OS=Medicago truncat... 207 4e-52 tr|B7FJL4|B7FJL4_MEDTR Putative uncharacterized protein OS=Medic... 206 8e-52 tr|Q94AK8|Q94AK8_ARATH Putative uncharacterized protein At1g2526... 193 6e-48 tr|Q2RBN3|Q2RBN3_ORYSJ Os11g0105400 protein OS=Oryza sativa subs... 192 7e-48 tr|B8BNS8|B8BNS8_ORYSI Putative uncharacterized protein OS=Oryza... 192 7e-48 tr|A2ZH94|A2ZH94_ORYSI Putative uncharacterized protein OS=Oryza... 192 7e-48 tr|B4FT06|B4FT06_MAIZE Putative uncharacterized protein OS=Zea m... 187 3e-46 tr|B6T5L3|B6T5L3_MAIZE mRNA turnover protein 4 OS=Zea mays PE=2 ... 184 2e-45 tr|Q9FRH5|Q9FRH5_ARATH Putative uncharacterized protein F4F7.35 ... 182 8e-45 tr|Q2QYV8|Q2QYV8_ORYSJ Os12g0105200 protein OS=Oryza sativa subs... 179 1e-43 tr|Q4KTI9|Q4KTI9_SUBDO PO-like OS=Suberites domuncula PE=2 SV=1 157 3e-37 tr|B6PP82|B6PP82_BRAFL Putative uncharacterized protein OS=Branc... 155 2e-36 tr|A7T1P1|A7T1P1_NEMVE Predicted protein OS=Nematostella vectens... 154 3e-36 tr|A2AMV1|A2AMV1_MOUSE MRT4, mRNA turnover 4, homolog (S. cerevi... 152 9e-36 tr|A2AMU9|A2AMU9_MOUSE MRT4, mRNA turnover 4, homolog (S. cerevi... 152 9e-36 tr|B5X718|B5X718_SALSA mRNA turnover protein 4 homolog OS=Salmo ... 152 1e-35 tr|A8XH03|A8XH03_CAEBR Putative uncharacterized protein OS=Caeno... 152 1e-35 tr|B3KNB3|B3KNB3_HUMAN cDNA FLJ14165 fis, clone NT2RP1000746, hi... 151 2e-35 tr|B5DF25|B5DF25_RAT Mrto4 protein (Fragment) OS=Rattus norvegic... 150 3e-35 tr|Q6DEP1|Q6DEP1_XENTR MGC89995 protein (Novel protein) OS=Xenop... 149 7e-35 tr|B5XC66|B5XC66_SALSA mRNA turnover protein 4 homolog OS=Salmo ... 149 9e-35 tr|Q19302|Q19302_CAEEL Putative uncharacterized protein OS=Caeno... 149 9e-35 tr|Q4RX35|Q4RX35_TETNG Chromosome 11 SCAF14979, whole genome sho... 148 2e-34 tr|Q568C9|Q568C9_DANRE Zgc:110388 OS=Danio rerio GN=zgc:110388 P... 148 2e-34
>tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 229
Score = 244 bits (624), Expect = 2e-63 Identities = 118/161 (73%), Positives = 134/161 (83%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKRNK+VTLSKTKKKGRE KES+V VR+ LE+Y S+Y+F+FENMRN KFK RD L Sbjct: 1 MPKSKRNKMVTLSKTKKKGREHKESIVNQVRQALEDYISVYVFSFENMRNVKFKGLRDRL 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 K SSRFFLGSNKVLQ++LGRT A+EVKD +HKASEMLHG+CGLF TNLPK Sbjct: 61 KGSSRFFLGSNKVLQISLGRTAADEVKDGIHKASEMLHGDCGLFFTNLPKEEVMRVFETF 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 HDF +TGSLATET+EL EGPLEQF+HDMEPFLRKQG+PV Sbjct: 121 EEHDFARTGSLATETIELKEGPLEQFTHDMEPFLRKQGMPV 161
>tr|A9U247|A9U247_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_227616 PE=4 SV=1 Length = 232
Score = 239 bits (611), Expect = 5e-62 Identities = 116/161 (72%), Positives = 136/161 (84%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKRNKLVTLSKTKKKG+E KESLVK+VR+CL+EY+SLYIF+F NMRNTKFKEF++ L Sbjct: 1 MPKSKRNKLVTLSKTKKKGKEQKESLVKSVRDCLDEYASLYIFSFVNMRNTKFKEFKEKL 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 K+SSRFFLG NKVLQ+ALG+T AEE K+ LH+ASE +HG CGLF TNLPK Sbjct: 61 KASSRFFLGGNKVLQIALGKTAAEEHKEGLHQASEQIHGFCGLFFTNLPKFEVLREFREF 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 DF +TGS+ATETV+L EGPL+QF+HDMEPFLRKQG+PV Sbjct: 121 EELDFARTGSIATETVDLKEGPLDQFTHDMEPFLRKQGMPV 161
>tr|A9SYQ4|A9SYQ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_217191 PE=4 SV=1 Length = 232
Score = 239 bits (611), Expect = 5e-62 Identities = 117/161 (72%), Positives = 136/161 (84%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKRNKLVTLSKTKKK +E KESLVK+VR+CL++Y+SLYIF+FENMRN KFKEF++ L Sbjct: 1 MPKSKRNKLVTLSKTKKKDKEQKESLVKSVRDCLDQYTSLYIFSFENMRNIKFKEFKEKL 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 KSSSRFFLG NKVLQ+ALG++ AEE K+ LH+ASE++HG CGLF TNLPK Sbjct: 61 KSSSRFFLGGNKVLQIALGKSEAEEQKEGLHQASELIHGFCGLFFTNLPKSEVIRGFQEF 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 DF +TGS+ATETVEL EGPLEQFSHDMEPFLRKQG+PV Sbjct: 121 EELDFARTGSVATETVELQEGPLEQFSHDMEPFLRKQGMPV 161
>tr|Q3HVP9|Q3HVP9_SOLTU Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1 Length = 229
Score = 218 bits (554), Expect = 2e-55 Identities = 103/161 (63%), Positives = 129/161 (80%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKRN+ VTLSKTKKKG+E KE++V ++REC E+YSS Y+F+FENMRN KFKEFRD L Sbjct: 1 MPKSKRNRAVTLSKTKKKGKEHKENIVNSIRECAEKYSSAYVFSFENMRNLKFKEFRDQL 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 KSSSRFFLGSNKV+Q+ALGR+ ++E++ LHK S+++ G+ GL TNL K Sbjct: 61 KSSSRFFLGSNKVMQVALGRSDSDEIRPGLHKISKLVRGDSGLCFTNLSKEEVQRLFNEY 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 HDF +TG+ ATE VEL EGPL+QF+H+MEPFLRKQG+PV Sbjct: 121 EEHDFARTGTTATEKVELQEGPLDQFTHEMEPFLRKQGMPV 161
>tr|A9PEW5|A9PEW5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 229
Score = 216 bits (551), Expect = 5e-55 Identities = 102/161 (63%), Positives = 132/161 (81%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKRN+ VTLSKTKKKGRE KES+V ++R+ +E+Y+S+Y+F+FENMRN KFKEFR+ Sbjct: 1 MPKSKRNRPVTLSKTKKKGREHKESIVNSIRDAVEKYNSIYVFSFENMRNLKFKEFREQH 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 K +SRFFLGSNKV+Q++LGR+ A+E++ LHK S++L G+ GLFLTNLP+ Sbjct: 61 KLTSRFFLGSNKVMQVSLGRSAADEIRPGLHKVSKLLCGDAGLFLTNLPREEVERLFNEY 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 +DF +TG+ ATETVEL EGPLEQF+H+MEPFLRKQG+PV Sbjct: 121 EEYDFARTGTTATETVELKEGPLEQFTHEMEPFLRKQGMPV 161
>tr|A7PYW1|A7PYW1_VITVI Chromosome chr12 scaffold_38, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026600001 PE=3 SV=1 Length = 229
Score = 214 bits (546), Expect = 2e-54 Identities = 101/161 (62%), Positives = 129/161 (80%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKR++ VTLSKTKKKGR KES+V ++R+ +E YSS+Y+F+FENMRN KFKEFR+ L Sbjct: 1 MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 KS+SRFFLGSNKV+Q+A+GR+ A+E++ L K S++LHG+ GLF TNLPK Sbjct: 61 KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 +DF +TGS A E VEL EGPL+QF+H+MEPFLRKQG+PV Sbjct: 121 EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQGMPV 161
>tr|A2Q489|A2Q489_MEDTR Ribosomal protein L10 OS=Medicago truncatula GN=MtrDRAFT_AC157375g4v1 PE=3 SV=1 Length = 228
Score = 207 bits (526), Expect = 4e-52 Identities = 97/161 (60%), Positives = 127/161 (78%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKRNK VTLSKT KKGR KE ++ +R+ E+YSS+Y+F F+NMRN+K KEFR+ L Sbjct: 1 MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 +SSS+FFLGSNKV+Q+A+GR++++E+K +LHK S++L G+ G+ TNL K Sbjct: 61 QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 +DF +TGS+ATE VEL EGPLEQF+HDMEPFLRKQG+PV Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPFLRKQGMPV 161
>tr|B7FJL4|B7FJL4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 228
Score = 206 bits (523), Expect = 8e-52 Identities = 96/161 (59%), Positives = 127/161 (78%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKRNK VTLSKT KKGR KE ++ +R+ E+YSS+Y+F F+NMRN+K KEFR+ L Sbjct: 1 MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 +SSS+FFLGSNKV+Q+A+GR++++E+K +LHK S++L G+ G+ TNL K Sbjct: 61 QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 +DF +TGS+ATE VEL EGPLEQF+HDMEPFLR+QG+PV Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPFLRRQGMPV 161
>tr|Q94AK8|Q94AK8_ARATH Putative uncharacterized protein At1g25260 (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=At1g25260 PE=2 SV=1 Length = 235
Score = 193 bits (490), Expect = 6e-48 Identities = 91/161 (56%), Positives = 122/161 (75%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 245 MPKSKR++ VTLSKTKKKGRE KE +V +RE +E+YSS+Y+F+FENMRN KFKEFR Sbjct: 1 MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60
Query: 246 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 425 + + +FFLGSNKV+Q+ALGR+ +E++ ++K S++L G+ GL +T++PK Sbjct: 61 RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120
Query: 426 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 DF +TGS+A ETVEL EGPLEQF+H+MEP LRK +PV Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPV 161
>tr|Q2RBN3|Q2RBN3_ORYSJ Os11g0105400 protein OS=Oryza sativa subsp. japonica GN=Os11g0105400 PE=2 SV=1 Length = 233
Score = 192 bits (489), Expect = 7e-48 Identities = 94/162 (58%), Positives = 119/162 (73%), Gaps = 1/162 (0%) Frame = +3
Query: 66 MPKSKRNKLVTLSKTKKK-GRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDS 242 MPKSKRN+ VTLSKTKKK G E K +V +++ +E Y++ Y+F ++NMRN K K+ R+ Sbjct: 1 MPKSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQ 60
Query: 243 LKSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXX 422 LKSSSR FL KV+Q+ALGR++A+E K LHK S+ L G+ GLF TNLP+ Sbjct: 61 LKSSSRIFLAGKKVMQIALGRSSADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFRE 120
Query: 423 XXXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQGLPV 548 HDF +TGS+ TETVEL EGPLEQF+H+MEPFLRKQGLPV Sbjct: 121 FEEHDFARTGSIVTETVELKEGPLEQFTHEMEPFLRKQGLPV 162
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