DK954758 |
Clone id |
TST39A01NGRL0021_E18 |
Library |
TST39 |
Length |
652 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_E18. 5' end sequence. |
Accession |
DK954758 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3296Contig1 |
Sequence |
CAGCTGTGTTTGCGTGTGTGCGCGCGCTCACTGAGGTAGAGAACCACGCATTTTAACTCT TCCTCACTCTCGCGTACACATACACACACACACCCTCCCACACCCGTTCCCTTCCTGATC CTTCTCTTCTCAATCTCCTTCCCTTACAAACGCTCACCCACCTACACACACACACACACA CACTTTCTCTCTTGCATTTTTCTCACTCTTCATTCTCTCTCTCACTCACACACACATATA CAGTATAGCAGCGAATTCAACAATGGCCGAGGTCCTTACCTCCTCAGTTCCCCTCCCTGT GGTTCATACTCCTCCTTCTGCGGTTGTAGCGGACGCCCCGACCGAACACATCTTCCGATC CCCCCTTCCAGACATAGATGTCCCGGATCACCTCACTCTCCATGACTACATCTTCCAAAA CGCGTCCCTCTATCCTGACAAGCCCTGCATCATCGAGCATTCCACAGGTAGAGAGATCTC CTATGCAGAGGTGGAGACGGCTTCCCGAAGAGTTGCCGCCGGTCTTGTGAATTTGGGCAT CAAACAGGGGGATGTGGTCATGCTTTTGCTACCCAATTGCTATGAATTTGTGGTTCTTTT CCTGGGCATCTCCATGCGAGGCGCTGTTGCAACCACTGCGAATCCGCTCTAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9S777 |
Definition |
sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana |
Align length |
134 |
Score (bit) |
132.0 |
E-value |
2.0e-30 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7SBA8 |
Definition |
tr|B7SBA8|B7SBA8_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physcomitrella patens subsp. magdalenae |
Align length |
148 |
Score (bit) |
142.0 |
E-value |
1.0e-32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954758|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_E18, 5' (652 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B7SBA8|B7SBA8_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physco... 142 1e-32 tr|Q3YAU2|Q3YAU2_EUCCA 4-coumarate:coenzyme A ligase OS=Eucalypt... 138 3e-31 tr|A8R7L9|A8R7L9_EUCGG 4-coumarate:coenzyme A ligase OS=Eucalypt... 136 1e-30 tr|B7SBA7|B7SBA7_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physco... 135 2e-30 tr|B7SB99|B7SB99_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physco... 135 3e-30 tr|A9T8V9|A9T8V9_PHYPA Predicted protein OS=Physcomitrella paten... 135 3e-30 tr|Q8S564|Q8S564_SOYBN 4-coumarate:coenzyme A ligase OS=Glycine ... 134 4e-30 tr|Q94G18|Q94G18_POPJC 4-coumarate:CoA ligase 4 OS=Populus jacki... 134 6e-30 tr|B7SBA5|B7SBA5_PHYPA 4-coumarate:coenzyme A ligase 3 OS=Physco... 134 6e-30 tr|B7SBA0|B7SBA0_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physco... 134 6e-30 tr|A9PGE3|A9PGE3_POPTR Putative uncharacterized protein OS=Popul... 134 6e-30 tr|B7SBA4|B7SBA4_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physco... 133 8e-30 tr|A9RP51|A9RP51_PHYPA Predicted protein OS=Physcomitrella paten... 133 8e-30 tr|Q3ECI2|Q3ECI2_ARATH Uncharacterized protein At1g65060.2 OS=Ar... 132 2e-29 tr|B7SBB0|B7SBB0_PHYPA 4-coumarate:coenzyme A ligase 4 OS=Physco... 132 2e-29 tr|B8QN50|B8QN50_PINRA 4-coumarate-CoA ligase OS=Pinus radiata P... 132 2e-29 tr|B8LQR8|B8LQR8_PICSI Putative uncharacterized protein OS=Picea... 132 2e-29 tr|B7SBA2|B7SBA2_PHYPA 4-coumarate:coenzyme A ligase 4 OS=Physco... 132 2e-29 tr|A9T5A3|A9T5A3_PHYPA Predicted protein OS=Physcomitrella paten... 132 2e-29 tr|O81140|O81140_POPTM 4-coumarate:CoA ligase OS=Populus tremulo... 131 3e-29 tr|B7SBA6|B7SBA6_PHYPA 4-coumarate:coenzyme A ligase 4 OS=Physco... 131 3e-29 tr|B6E466|B6E466_LEUGL 4-coumarate CoA ligase 1 OS=Leucaena glau... 131 4e-29 tr|B7SBA9|B7SBA9_PHYPA 4-coumarate:coenzyme A ligase 3 OS=Physco... 130 5e-29 tr|B7SBA1|B7SBA1_PHYPA 4-coumarate:coenzyme A ligase 3 OS=Physco... 130 5e-29 tr|B7SBA3|B7SBA3_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physco... 129 1e-28 tr|Q9LL50|Q9LL50_RUBID 4-coumarate:coA ligase 2 OS=Rubus idaeus ... 129 2e-28 tr|O48869|O48869_POPJC 4-coumarate:CoA ligase 1 OS=Populus jacki... 127 6e-28 tr|B1GUX0|B1GUX0_ARALY 4-cumarate-COA-ligase (Fragment) OS=Arabi... 127 8e-28 tr|A7Q6G1|A7Q6G1_VITVI Chromosome chr11 scaffold_56, whole genom... 127 8e-28 tr|Q42880|Q42880_LITER 4-coumarate:CoA ligase OS=Lithospermum er... 126 1e-27
>tr|B7SBA8|B7SBA8_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physcomitrella patens subsp. magdalenae GN=4CL2 PE=4 SV=1 Length = 583
Score = 142 bits (359), Expect = 1e-32 Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 11/148 (7%) Frame = +2
Query: 242 SIAANSTMAEVLTSSVPLPVVHTPPSAVVADAPTEH-----------IFRSPLPDIDVPD 388 S+ N AEV + +PL V P ++ ++PTE I+RS LPDID+P+ Sbjct: 18 SMMMNPAQAEVREARIPLTAVSEP---LLLESPTETEPAQYGQVQEVIYRSKLPDIDIPN 74
Query: 389 HLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDVVMLL 568 H+ L DY F+ A+ +P+K C+I+ +TGR+ +Y E+E + RRVAAGL +G+KQGDV+ LL Sbjct: 75 HMPLADYCFEKAAQWPEKVCLIDGNTGRKHTYGEIEVSMRRVAAGLAKIGVKQGDVIALL 134
Query: 569 LPNCYEFVVLFLGISMRGAVATTANPLY 652 LPNC EFV +FLG + RGAV TTANP Y Sbjct: 135 LPNCAEFVQVFLGAAKRGAVITTANPFY 162
>tr|Q3YAU2|Q3YAU2_EUCCA 4-coumarate:coenzyme A ligase OS=Eucalyptus camaldulensis GN=4CL1 PE=2 SV=1 Length = 544
Score = 138 bits (347), Expect = 3e-31 Identities = 66/108 (61%), Positives = 82/108 (75%) Frame = +2
Query: 329 ADAPTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASR 508 ++ P E IFRS LPDI +PD+L+LH Y F+N S + D+PC+I +TGR +YAEVE SR Sbjct: 6 SEQPREFIFRSKLPDIYIPDNLSLHAYCFENISEFADRPCVINGATGRTYTYAEVELISR 65
Query: 509 RVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISMRGAVATTANPLY 652 RV+AGL LG+ QGDV+MLLL NC EFV FLG S RGA++TTANP Y Sbjct: 66 RVSAGLNGLGVGQGDVIMLLLQNCPEFVFAFLGASYRGAISTTANPFY 113
>tr|A8R7L9|A8R7L9_EUCGG 4-coumarate:coenzyme A ligase OS=Eucalyptus globulus subsp. globulus GN=Egl4CL PE=3 SV=2 Length = 544
Score = 136 bits (342), Expect = 1e-30 Identities = 65/108 (60%), Positives = 82/108 (75%) Frame = +2
Query: 329 ADAPTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASR 508 ++ P E IFRS LPDI +PD+L+LH Y F+N S + D+PC+I +TG+ +YAEVE SR Sbjct: 6 SEQPREFIFRSKLPDIYIPDNLSLHAYCFENISEFADRPCVINGATGQTYTYAEVELISR 65
Query: 509 RVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISMRGAVATTANPLY 652 RV+AGL LG+ QGDV+MLLL NC EFV FLG S RGA++TTANP Y Sbjct: 66 RVSAGLNGLGVGQGDVIMLLLRNCPEFVFAFLGASYRGAISTTANPFY 113
>tr|B7SBA7|B7SBA7_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physcomitrella patens subsp. magdalenae GN=4CL1 PE=4 SV=1 Length = 585
Score = 135 bits (340), Expect = 2e-30 Identities = 69/137 (50%), Positives = 91/137 (66%) Frame = +2
Query: 242 SIAANSTMAEVLTSSVPLPVVHTPPSAVVADAPTEHIFRSPLPDIDVPDHLTLHDYIFQN 421 S+A + L+ + + P A V D I+RS LPDID+P+H+ L DY + Sbjct: 32 SLAIGENLEPFLSETDAESQIMEPVHAEVHD----FIYRSKLPDIDIPNHMPLADYCLEK 87
Query: 422 ASLYPDKPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDVVMLLLPNCYEFVVLF 601 +S +PDK C+I+ TGRE Y E+E +SRRVAAGL +G+KQGDV+ LLLPNC EFV++F Sbjct: 88 SSQWPDKVCLIDGVTGREHRYGEIELSSRRVAAGLDKIGVKQGDVIALLLPNCAEFVLVF 147
Query: 602 LGISMRGAVATTANPLY 652 LG + RGAV TTANP Y Sbjct: 148 LGAAKRGAVVTTANPFY 164
>tr|B7SB99|B7SB99_PHYPA 4-coumarate:coenzyme A ligase 1 OS=Physcomitrella patens subsp. patens GN=4CL1 PE=4 SV=1 Length = 585
Score = 135 bits (339), Expect = 3e-30 Identities = 62/103 (60%), Positives = 80/103 (77%) Frame = +2
Query: 344 EHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAG 523 + I+RS LPDID+P+H+ L DY + +S +PDK C+I+ TGRE Y E+E +SRRVAAG Sbjct: 62 DFIYRSKLPDIDIPNHMPLADYCLEKSSQWPDKVCLIDGVTGREHRYGEIELSSRRVAAG 121
Query: 524 LVNLGIKQGDVVMLLLPNCYEFVVLFLGISMRGAVATTANPLY 652 L +G+KQGDV+ LLLPNC EFV++FLG + RGAV TTANP Y Sbjct: 122 LDKIGVKQGDVIALLLPNCAEFVLVFLGAAKRGAVVTTANPFY 164
>tr|A9T8V9|A9T8V9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_89614 PE=3 SV=1 Length = 533
Score = 135 bits (339), Expect = 3e-30 Identities = 62/103 (60%), Positives = 80/103 (77%) Frame = +2
Query: 344 EHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAG 523 + I+RS LPDID+P+H+ L DY + +S +PDK C+I+ TGRE Y E+E +SRRVAAG Sbjct: 10 DFIYRSKLPDIDIPNHMPLADYCLEKSSQWPDKVCLIDGVTGREHRYGEIELSSRRVAAG 69
Query: 524 LVNLGIKQGDVVMLLLPNCYEFVVLFLGISMRGAVATTANPLY 652 L +G+KQGDV+ LLLPNC EFV++FLG + RGAV TTANP Y Sbjct: 70 LDKIGVKQGDVIALLLPNCAEFVLVFLGAAKRGAVVTTANPFY 112
>tr|Q8S564|Q8S564_SOYBN 4-coumarate:coenzyme A ligase OS=Glycine max GN=4CL1 PE=2 SV=1 Length = 546
Score = 134 bits (338), Expect = 4e-30 Identities = 61/109 (55%), Positives = 83/109 (76%) Frame = +2
Query: 326 VADAPTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETAS 505 +A +P E IFRSPLPDI +P HL L+ Y FQN S + D+PC+I+ TG ++YA+V+ A+ Sbjct: 1 MAPSPQEIIFRSPLPDIPIPTHLPLYSYCFQNLSQFHDRPCLIDGDTGETLTYADVDLAA 60
Query: 506 RRVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISMRGAVATTANPLY 652 RR+A+GL +GI+QGDV+ML+L NC +F + FLG + RGAV TTANP Y Sbjct: 61 RRIASGLHKIGIRQGDVIMLVLRNCPQFALAFLGATHRGAVVTTANPFY 109
>tr|Q94G18|Q94G18_POPJC 4-coumarate:CoA ligase 4 OS=Populus jackii PE=2 SV=1 Length = 579
Score = 134 bits (336), Expect = 6e-30 Identities = 69/131 (52%), Positives = 85/131 (64%), Gaps = 1/131 (0%) Frame = +2
Query: 263 MAEVLTSSVPLPVVHTPPSAVVADA-PTEHIFRSPLPDIDVPDHLTLHDYIFQNASLYPD 439 M V T P P + P + + T+HIFRS LPDI + +HL LH Y F+N S + D Sbjct: 1 MMSVATVEPPKPELSPPQNQNAPSSHETDHIFRSKLPDITISNHLPLHAYCFENLSDFSD 60
Query: 440 KPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDVVMLLLPNCYEFVVLFLGISMR 619 +PC+I STG+ S+AE SR+VAAGL NLGIK+GDV+M LL NC EFV F+G SM Sbjct: 61 RPCLISGSTGKTYSFAETHLISRKVAAGLSNLGIKKGDVIMTLLQNCPEFVFSFMGASMI 120
Query: 620 GAVATTANPLY 652 GAV TT NP Y Sbjct: 121 GAVTTTVNPFY 131
>tr|B7SBA5|B7SBA5_PHYPA 4-coumarate:coenzyme A ligase 3 OS=Physcomitrella patens subsp. californica GN=4CL3 PE=4 SV=1 Length = 576
Score = 134 bits (336), Expect = 6e-30 Identities = 71/152 (46%), Positives = 93/152 (61%), Gaps = 15/152 (9%) Frame = +2
Query: 242 SIAANSTMAEVLTSSV------------PLPV---VHTPPSAVVADAPTEHIFRSPLPDI 376 SI + S M+E LT S+ P P T +D E IFRS LPDI Sbjct: 4 SIISESLMSEPLTDSIMKSLQSDVQELKPFPTESWAETKTERAPSDQVQEFIFRSKLPDI 63
Query: 377 DVPDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDV 556 + +H+ L DY + + +PDK C+I+ +TGRE SY+E+E SRRVAAGL +G++QG V Sbjct: 64 YIANHMPLTDYCLEKVTQWPDKVCLIDGNTGREYSYSEMELTSRRVAAGLAKIGVEQGGV 123
Query: 557 VMLLLPNCYEFVVLFLGISMRGAVATTANPLY 652 + LLLPNC EFV +FLG + RGA+ TTANP Y Sbjct: 124 IALLLPNCAEFVQVFLGAAKRGAIVTTANPFY 155
>tr|B7SBA0|B7SBA0_PHYPA 4-coumarate:coenzyme A ligase 2 OS=Physcomitrella patens subsp. patens GN=4CL2 PE=4 SV=1 Length = 585
Score = 134 bits (336), Expect = 6e-30 Identities = 68/150 (45%), Positives = 96/150 (64%), Gaps = 13/150 (8%) Frame = +2
Query: 242 SIAANSTMAEVLTSSVPLPVVHTPPSAVVADAPTE-------------HIFRSPLPDIDV 382 S+ + AEV + +P V P ++ ++P E I+RS LPDID+ Sbjct: 18 SMKMKTAQAEVREARIPPTAVSEP---LLLESPMETETEPAQYGQVQEFIYRSKLPDIDI 74
Query: 383 PDHLTLHDYIFQNASLYPDKPCIIEHSTGREISYAEVETASRRVAAGLVNLGIKQGDVVM 562 P+H+ L DY + A+ +P+ C+I+ +TGR+ +Y E+E + RRVAAGL N+G+KQGDV+ Sbjct: 75 PNHMPLADYCLEKAAQWPENVCLIDGNTGRKHTYGEIEVSMRRVAAGLANIGVKQGDVIA 134
Query: 563 LLLPNCYEFVVLFLGISMRGAVATTANPLY 652 LLLPNC EFV +FLG + RGAV TTANP Y Sbjct: 135 LLLPNCAEFVQVFLGAAKRGAVITTANPFY 164
|