DK954735 |
Clone id |
TST39A01NGRL0021_D18 |
Library |
TST39 |
Length |
543 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_D18. 5' end sequence. |
Accession |
DK954735 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3768Contig1 |
Sequence |
CTTGCAAAATAAGTAAAATAATTAGCAACACATTTGGAACAGCTTGTTCTTTGTATTGTT GTTGGAAGTGCGACAACAAAAGCGAAGGCTGGATGCGGGCCTGCGAGAGTGGTGCAGCGC GAACAGGGAAGTCTGTGTGTTGCAGCGGAGATCATGAACCCTTTGCGAGAGATAGGGCGT ACATTTACTCTGAATATGGGGAGCGATGGTGCTGCTTCCCTGCAGAAGGTCATCCTAAAG AAGCTCACCGAGTTTATGGGCGATTACTCAGATGATGTTCTTGCGCAATATATACTAGTT CTAGTGGCACATGGCAAGCAACAAGCCCAGGCTGTCAAGGATCTCGAAGCCTTCTTGGGC GACAGAAGTGAATCTTTTGTAGCCTGGCTATGGGATTATCTGTGCTCGAACCTACATCTG CATGCATCTGTTTCAAAAGCACCAGTATTGGGTGGTAATGGAGTGGAGCATAAGGTAGAA CAAGCAGACAGTGGGAGAGTAAAACTTGTCCAAGCTGATGTACAGGTGTCATCTTTAGGA AAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7TMD5 |
Definition |
sp|Q7TMD5|ZC3HE_RAT Zinc finger CCCH domain-containing protein 14 OS=Rattus norvegicus |
Align length |
67 |
Score (bit) |
48.9 |
E-value |
2.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S4C3 |
Definition |
tr|A9S4C3|A9S4C3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
80 |
Score (bit) |
99.8 |
E-value |
9.0e-20 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954735|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_D18, 5' (543 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S4C3|A9S4C3_PHYPA Predicted protein OS=Physcomitrella paten... 100 9e-20 tr|B6T7Z7|B6T7Z7_MAIZE RNA recognition motif family protein OS=Z... 99 1e-19 tr|Q7XR25|Q7XR25_ORYSJ OSJNBb0022F23.5 protein OS=Oryza sativa s... 96 9e-19 tr|A3AUR9|A3AUR9_ORYSJ Putative uncharacterized protein OS=Oryza... 96 9e-19 tr|A7QWV2|A7QWV2_VITVI Chromosome chr13 scaffold_210, whole geno... 96 2e-18 tr|Q01IL0|Q01IL0_ORYSA H0305E08.1 protein (B0806H07.2 protein) O... 95 2e-18 tr|Q9LTX1|Q9LTX1_ARATH Similarity to poly(A)-binding protein OS=... 87 4e-16 tr|Q9C7B4|Q9C7B4_ARATH Putative uncharacterized protein T2E22.5 ... 87 4e-16 tr|Q7XVN8|Q7XVN8_ORYSJ Os04g0306800 protein OS=Oryza sativa subs... 81 3e-14 tr|Q6ZK85|Q6ZK85_ORYSJ Os08g0504600 protein OS=Oryza sativa subs... 81 3e-14 tr|Q01M01|Q01M01_ORYSA OSIGBa0096F13.9 protein (OSIGBa0125J07.4 ... 81 3e-14 tr|B8BC98|B8BC98_ORYSI Putative uncharacterized protein OS=Oryza... 81 3e-14 tr|A3BUM5|A3BUM5_ORYSJ Putative uncharacterized protein OS=Oryza... 81 3e-14 tr|A3AS73|A3AS73_ORYSJ Putative uncharacterized protein OS=Oryza... 81 3e-14 tr|B8AVI4|B8AVI4_ORYSI Putative uncharacterized protein OS=Oryza... 71 4e-11 tr|Q0WPW8|Q0WPW8_ARATH Putative poly(A) binding protein (At2g243... 68 3e-10 tr|A9SZ88|A9SZ88_PHYPA Predicted protein OS=Physcomitrella paten... 65 2e-09 tr|Q0JCG2|Q0JCG2_ORYSJ Os04g0472400 protein OS=Oryza sativa subs... 58 3e-07 tr|A8P8R5|A8P8R5_BRUMA Putative uncharacterized protein OS=Brugi... 53 1e-05 tr|B6M805|B6M805_BRAFL Putative uncharacterized protein (Fragmen... 50 8e-05 tr|Q95XU6|Q95XU6_CAEEL Putative uncharacterized protein OS=Caeno... 50 1e-04 tr|A8WL05|A8WL05_CAEBR Putative uncharacterized protein OS=Caeno... 50 1e-04 tr|B4JFX0|B4JFX0_DROGR GH18800 OS=Drosophila grimshawi GN=GH1880... 49 1e-04 tr|Q5RA27|Q5RA27_PONAB Putative uncharacterized protein DKFZp459... 49 2e-04 tr|B5MBX9|B5MBX9_HUMAN Putative uncharacterized protein ZC3H14 O... 49 2e-04 tr|B4E2H4|B4E2H4_HUMAN cDNA FLJ56206, highly similar to Homo sap... 49 2e-04 tr|B4DZW7|B4DZW7_HUMAN cDNA FLJ54768, highly similar to Homo sap... 49 2e-04 tr|B4DXU8|B4DXU8_HUMAN cDNA FLJ53396, highly similar to Homo sap... 49 2e-04 tr|Q7PQL7|Q7PQL7_ANOGA AGAP004265-PA (Fragment) OS=Anopheles gam... 49 2e-04 tr|Q297C0|Q297C0_DROPS GA19083 OS=Drosophila pseudoobscura pseud... 49 2e-04
>tr|A9S4C3|A9S4C3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_162759 PE=4 SV=1 Length = 731
Score = 99.8 bits (247), Expect = 9e-20 Identities = 41/80 (51%), Positives = 64/80 (80%) Frame = +1
Query: 172 IGRTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEA 351 +G + +++ S GAA + + +KL+E++G+Y+DDVL +Y++VLV HGK+++QAV DLEA Sbjct: 2 VGAKYNMDLSSSGAAKFRGCVKEKLSEYIGNYTDDVLVEYVVVLVGHGKEKSQAVNDLEA 61
Query: 352 FLGDRSESFVAWLWDYLCSN 411 FLG SESFV+WLWD++ +N Sbjct: 62 FLGGDSESFVSWLWDHMATN 81
>tr|B6T7Z7|B6T7Z7_MAIZE RNA recognition motif family protein OS=Zea mays PE=2 SV=1 Length = 706
Score = 99.0 bits (245), Expect = 1e-19 Identities = 43/88 (48%), Positives = 63/88 (71%) Frame = +1
Query: 178 RTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAFL 357 RTF N +G LQ + +KL E MGDYSDD LA+Y++VL+ +G+++ +A K+L+ FL Sbjct: 7 RTFKANFTGEGVTMLQDRVKEKLRELMGDYSDDTLAEYVVVLLRNGRRKDEAAKELQVFL 66
Query: 358 GDRSESFVAWLWDYLCSNLHLHASVSKA 441 GD +++FV+WLWD+L SNLHL+ A Sbjct: 67 GDDNDAFVSWLWDHLSSNLHLYVHAKSA 94
>tr|Q7XR25|Q7XR25_ORYSJ OSJNBb0022F23.5 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0022F23.5 PE=4 SV=2 Length = 690
Score = 96.3 bits (238), Expect = 9e-19 Identities = 42/82 (51%), Positives = 61/82 (74%) Frame = +1
Query: 178 RTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAFL 357 RTF N +G L+ + +KL E MGDYSDD LA+Y++VL+ +G+++ +A K+LE FL Sbjct: 8 RTFKANFTGEGVRLLRARVKEKLRELMGDYSDDTLAEYVVVLLRNGRRKDEAAKELEVFL 67
Query: 358 GDRSESFVAWLWDYLCSNLHLH 423 D +E+FV+WLWD+L SNLHL+ Sbjct: 68 SDNNEAFVSWLWDHLSSNLHLY 89
>tr|A3AUR9|A3AUR9_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_014541 PE=4 SV=1 Length = 207
Score = 96.3 bits (238), Expect = 9e-19 Identities = 42/82 (51%), Positives = 61/82 (74%) Frame = +1
Query: 178 RTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAFL 357 RTF N +G L+ + +KL E MGDYSDD LA+Y++VL+ +G+++ +A K+LE FL Sbjct: 8 RTFKANFTGEGVRLLRARVKEKLRELMGDYSDDTLAEYVVVLLRNGRRKDEAAKELEVFL 67
Query: 358 GDRSESFVAWLWDYLCSNLHLH 423 D +E+FV+WLWD+L SNLHL+ Sbjct: 68 SDNNEAFVSWLWDHLSSNLHLY 89
>tr|A7QWV2|A7QWV2_VITVI Chromosome chr13 scaffold_210, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00008834001 PE=4 SV=1 Length = 698
Score = 95.5 bits (236), Expect = 2e-18 Identities = 42/82 (51%), Positives = 62/82 (75%) Frame = +1
Query: 178 RTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAFL 357 RTF +N DGAA L++ + +KL EFMGDY+DD L +Y++VL+ +G+++ +A +L FL Sbjct: 10 RTFRVNFSGDGAARLRERVKEKLKEFMGDYTDDTLVEYVIVLLRNGRRKEEARNELNVFL 69
Query: 358 GDRSESFVAWLWDYLCSNLHLH 423 GD S SFV+WLWD+L S+L L+ Sbjct: 70 GDDSHSFVSWLWDHLDSHLQLY 91
>tr|Q01IL0|Q01IL0_ORYSA H0305E08.1 protein (B0806H07.2 protein) OS=Oryza sativa GN=H0305E08.1 PE=4 SV=1 Length = 690
Score = 95.1 bits (235), Expect = 2e-18 Identities = 41/82 (50%), Positives = 61/82 (74%) Frame = +1
Query: 178 RTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAFL 357 RTF N +G L+ + +KL E MGDYSDD LA+Y++VL+ +G+++ +A K+LE FL Sbjct: 8 RTFKANFTGEGVRLLRARVKEKLRELMGDYSDDTLAEYVVVLLRNGRRKDEAAKELEVFL 67
Query: 358 GDRSESFVAWLWDYLCSNLHLH 423 D +++FV+WLWD+L SNLHL+ Sbjct: 68 SDNNDAFVSWLWDHLSSNLHLY 89
>tr|Q9LTX1|Q9LTX1_ARATH Similarity to poly(A)-binding protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 662
Score = 87.4 bits (215), Expect = 4e-16 Identities = 36/79 (45%), Positives = 60/79 (75%) Frame = +1
Query: 178 RTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAFL 357 RTF + +G A L++++ KL E+MGDY+DD+L +Y++VL+ +G+++ +A +L+ FL Sbjct: 10 RTFNGDFSVEGVAKLKEMVKDKLKEYMGDYTDDILVEYVIVLLRNGRRKEEANNELKIFL 69
Query: 358 GDRSESFVAWLWDYLCSNL 414 GD S+SFVAWLWD+L ++ Sbjct: 70 GDDSDSFVAWLWDHLAESV 88
>tr|Q9C7B4|Q9C7B4_ARATH Putative uncharacterized protein T2E22.5 OS=Arabidopsis thaliana GN=T2E22.5 PE=4 SV=1 Length = 674
Score = 87.4 bits (215), Expect = 4e-16 Identities = 36/79 (45%), Positives = 60/79 (75%) Frame = +1
Query: 178 RTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAFL 357 RTF + +G A L++++ KL E+MGDY+DD+L +Y++VL+ +G+++ +A +L+ FL Sbjct: 10 RTFNGDFSVEGVAKLKEMVKDKLKEYMGDYTDDILVEYVIVLLRNGRRKEEANNELKIFL 69
Query: 358 GDRSESFVAWLWDYLCSNL 414 GD S+SFVAWLWD+L ++ Sbjct: 70 GDDSDSFVAWLWDHLAESV 88
>tr|Q7XVN8|Q7XVN8_ORYSJ Os04g0306800 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0023J03.10 PE=2 SV=2 Length = 649
Score = 81.3 bits (199), Expect = 3e-14 Identities = 38/75 (50%), Positives = 52/75 (69%) Frame = +1
Query: 178 RTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAFL 357 R+F ++ S A +L+ + L F+G Y+DD+LA+YI++LV +GK Q QA DLEAFL Sbjct: 26 RSFRMDRLSPDADALRAAVADVLPRFLGSYTDDILAEYIVILVCNGKHQYQARDDLEAFL 85
Query: 358 GDRSESFVAWLWDYL 402 GD S FV+WLW YL Sbjct: 86 GDDSAKFVSWLWGYL 100
>tr|Q6ZK85|Q6ZK85_ORYSJ Os08g0504600 protein OS=Oryza sativa subsp. japonica GN=OJ1134_H03.9-1 PE=4 SV=1 Length = 684
Score = 81.3 bits (199), Expect = 3e-14 Identities = 33/88 (37%), Positives = 59/88 (67%) Frame = +1
Query: 175 GRTFTLNMGSDGAASLQKVILKKLTEFMGDYSDDVLAQYILVLVAHGKQQAQAVKDLEAF 354 GR F ++ G L + + +KL EF+ DY+++ L +Y+++L+ GK++ +A+K+L+ F Sbjct: 14 GRYFKADLTGAGVVQLSERVREKLREFVDDYTNNTLVEYVILLLEGGKRKDEAIKELDVF 73
Query: 355 LGDRSESFVAWLWDYLCSNLHLHASVSK 438 LG S +F++WLWD+L NLHL+ + Sbjct: 74 LGKDSRAFISWLWDHLSVNLHLYVQTQE 101
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