DK954712 |
Clone id |
TST39A01NGRL0021_C19 |
Library |
TST39 |
Length |
631 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_C19. 5' end sequence. |
Accession |
DK954712 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GTGAGTGGGAGCATTGATGCAACTATGGAGGATGGGCACTTGTTAGAAGACGAGAAGTTA GATGATGCTTTGGAGAGGGAATTTCAGCGTGCCCAATCTCCGCACGCACACAAAGATCCT CGAGGACTACCCCTTGCGCACGATCCTCCCCAGCCCTCCTCTCTCACATTCTCTTTCCCA GGCTGGGGAGTGCAGATCTTTCGAGACAGCAAACGGCGCAAGCCCTCCATTATCAGAGAC GCATCACAAGAAGATGCACAAACCCAGCAAGAAGAAGCAGAATCACTTCCTCTCGCTTTG GGATTTGCGGATGACCCTGGCAATGGCCACTCTGTTTACCAGATGCCCCCGGAAATTGTG GTCAACATCCTCAAGCGCCTCTCTATCAAAGACCTCTGCTCTGCCATGCGCACTTGCCAT TGGTGGCAGCACCTTGGCTCGCAAGATGATGTGTGGCAACGGTTTCATGAAAGCAATGAC ACTCCAATCCCTCTGCCCAGGTGGGGATTTGTAAAACATGATGCTTTGTCGTTTCAAGTG CAAACTCGAGAGGTTCTTGGTCGTGGTGGATATTTTTGTAAAGTCTTCTCACACCTAAGA AATGCATTGCGTGCATGGTGGGATACTGAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9D417 |
Definition |
sp|Q9D417|FBX24_MOUSE F-box only protein 24 OS=Mus musculus |
Align length |
48 |
Score (bit) |
43.1 |
E-value |
0.001 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NW14 |
Definition |
tr|A9NW14|A9NW14_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
163 |
Score (bit) |
115.0 |
E-value |
2.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954712|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_C19, 5' (631 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NW14|A9NW14_PICSI Putative uncharacterized protein OS=Picea... 115 2e-24 tr|A9T7N2|A9T7N2_PHYPA Predicted protein OS=Physcomitrella paten... 88 5e-16 tr|Q75AK9|Q75AK9_ASHGO ADL082Cp OS=Ashbya gossypii GN=ADL082C PE... 43 0.014 tr|B5VKQ1|B5VKQ1_YEAS6 YIL046Wp-like protein OS=Saccharomyces ce... 43 0.018 tr|B3LTQ2|B3LTQ2_YEAS1 F-box protein OS=Saccharomyces cerevisiae... 43 0.018 tr|A6ZVM3|A6ZVM3_YEAS7 F-box protein OS=Saccharomyces cerevisiae... 43 0.018 tr|A9TGM3|A9TGM3_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.023 tr|A7S147|A7S147_NEMVE Predicted protein OS=Nematostella vectens... 42 0.031 tr|A7TNL2|A7TNL2_VANPO Putative uncharacterized protein OS=Vande... 42 0.040 tr|A8N441|A8N441_COPC7 Predicted protein OS=Coprinopsis cinerea ... 40 0.089 tr|Q4RH23|Q4RH23_TETNG Chromosome 18 SCAF15072, whole genome sho... 40 0.12 tr|A8XT88|A8XT88_CAEBR CBR-FSN-1 protein OS=Caenorhabditis brigg... 40 0.12 tr|Q54DW1|Q54DW1_DICDI DOCK family protein OS=Dictyostelium disc... 40 0.15 tr|B8P4A0|B8P4A0_9APHY Predicted protein OS=Postia placenta Mad-... 40 0.15 tr|B6JXQ1|B6JXQ1_SCHJP F-box/WD repeat-containing protein pof1 O... 39 0.26 tr|B4DY42|B4DY42_HUMAN cDNA FLJ55008, highly similar to F-box on... 39 0.34 tr|B4DX91|B4DX91_HUMAN cDNA FLJ53233, highly similar to F-box on... 39 0.34 tr|A4D2D4|A4D2D4_HUMAN F-box protein 24 (F-box protein 24, isofo... 39 0.34 tr|A4D2D3|A4D2D3_HUMAN cDNA FLJ76929, highly similar to Homo sap... 39 0.34 tr|A9SKW4|A9SKW4_PHYPA Predicted protein (Fragment) OS=Physcomit... 38 0.44 tr|Q7PY35|Q7PY35_ANOGA AGAP001731-PA OS=Anopheles gambiae GN=AGA... 38 0.44 tr|B0W274|B0W274_CULQU Putative uncharacterized protein OS=Culex... 38 0.44 tr|Q17BQ9|Q17BQ9_AEDAE F-box only protein OS=Aedes aegypti GN=AA... 38 0.58 tr|Q16HH2|Q16HH2_AEDAE Putative uncharacterized protein OS=Aedes... 38 0.58 tr|B6P160|B6P160_BRAFL Putative uncharacterized protein OS=Branc... 38 0.58 tr|B6ND67|B6ND67_BRAFL Putative uncharacterized protein OS=Branc... 38 0.58 tr|B3S636|B3S636_TRIAD Putative uncharacterized protein (Fragmen... 38 0.58 tr|B0W6E2|B0W6E2_CULQU F-box only protein OS=Culex quinquefascia... 38 0.58 tr|Q6CID5|Q6CID5_KLULA KLLA0F27511p OS=Kluyveromyces lactis GN=K... 38 0.58 tr|B7PBI2|B7PBI2_IXOSC F-box containing protein, putative OS=Ixo... 37 0.76
>tr|A9NW14|A9NW14_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 474
Score = 115 bits (288), Expect = 2e-24 Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 9/163 (5%) Frame = +1
Query: 163 LTFSFPGWGVQIFRDSKRRKPSIIRXXXXXXXXXXXXXXXXLPLALGFADDPGNGHSVYQ 342 L+F FPGWG+ I +D+KR+ ++ R + + G AD PGNG VY Sbjct: 56 LSFEFPGWGIDICQDAKRKGAAVTRHTAMLSLEVPHKS---VEKSFGEADKPGNGTFVYG 112
Query: 343 MPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQRFHESND---------TPIPL 495 MP E+ ++IL RL+ +DLCS M+TC W L SQD+VW FH + + L Sbjct: 113 MPNEVWMHILTRLNTRDLCSIMQTCRWLHSLASQDEVWLSFHSPTEEEEEEGNKASDANL 172
Query: 496 PRWGFVKHDALSFQVQTREVLGRGGYFCKVFSHLRNALRAWWD 624 PRW +K LS Q++ R Y+ K + ++R+AL AWWD Sbjct: 173 PRWIKIKSGILSCQMKQ-----RFSYYSKGYDYMRSALNAWWD 210
>tr|A9T7N2|A9T7N2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_89160 PE=4 SV=1 Length = 491
Score = 87.8 bits (216), Expect = 5e-16 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 11/177 (6%) Frame = +1
Query: 127 LPLAHDPPQPSSLTFSFPGWGVQIFRDSKRRKPSIIRXXXXXXXXXXXXXXXXLPL---- 294 +P+ + P S L+F+FPGW IF+ KR+ PS Sbjct: 48 IPVVIEEPTSSHLSFAFPGWESDIFQGGKRKMPSTSGYIDDPQSSPSKRGKQVKNTDTAG 107
Query: 295 ---ALGFADDPGN----GHSVYQMPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDV 453 A +DP G + M E++ + K+L++KDLCS+MRTC W + ++DV Sbjct: 108 PSRASSALEDPTTPPVEGCPMDSMDDELLAYVFKKLNMKDLCSSMRTCKRWHRVACKEDV 167
Query: 454 WQRFHESNDTPIPLPRWGFVKHDALSFQVQTREVLGRGGYFCKVFSHLRNALRAWWD 624 W + P LPRW +++ A+S ++ R + R GY +R+AL AWW+ Sbjct: 168 WGHLPLPANVPGALPRWMEIRNAAMSMDLRVRFQVFRRGY-----DFIRSALDAWWN 219
>tr|Q75AK9|Q75AK9_ASHGO ADL082Cp OS=Ashbya gossypii GN=ADL082C PE=4 SV=1 Length = 569
Score = 43.1 bits (100), Expect = 0.014 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = +1
Query: 343 MPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQRFHESN-DTPIPLPRWG 507 +P E+ + IL L + LCSA C WQ L D VW E + D P WG Sbjct: 141 LPEEVALKILGYLDCQSLCSAAAVCRRWQELADDDTVWYHMCEQHIDRKCPKCGWG 196
>tr|B5VKQ1|B5VKQ1_YEAS6 YIL046Wp-like protein OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AWRI1631_91140 PE=4 SV=1 Length = 640
Score = 42.7 bits (99), Expect = 0.018 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1
Query: 343 MPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQRFHESN-DTPIPLPRWG 507 +P E+ + IL L + LC+A R C WQ L D VW E + D P WG Sbjct: 187 LPQELSLKILSYLDCQSLCNATRVCRKWQKLADDDRVWYHMCEQHIDRKCPNCGWG 242
>tr|B3LTQ2|B3LTQ2_YEAS1 F-box protein OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SCRG_05223 PE=4 SV=1 Length = 640
Score = 42.7 bits (99), Expect = 0.018 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1
Query: 343 MPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQRFHESN-DTPIPLPRWG 507 +P E+ + IL L + LC+A R C WQ L D VW E + D P WG Sbjct: 187 LPQELSLKILSYLDCQSLCNATRVCRKWQKLADDDRVWYHMCEQHIDRKCPNCGWG 242
>tr|A6ZVM3|A6ZVM3_YEAS7 F-box protein OS=Saccharomyces cerevisiae (strain YJM789) GN=MET30 PE=4 SV=1 Length = 640
Score = 42.7 bits (99), Expect = 0.018 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1
Query: 343 MPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQRFHESN-DTPIPLPRWG 507 +P E+ + IL L + LC+A R C WQ L D VW E + D P WG Sbjct: 187 LPQELSLKILSYLDCQSLCNATRVCRKWQKLADDDRVWYHMCEQHIDRKCPNCGWG 242
>tr|A9TGM3|A9TGM3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_145308 PE=4 SV=1 Length = 257
Score = 42.4 bits (98), Expect = 0.023 Identities = 21/53 (39%), Positives = 29/53 (54%) Frame = +1
Query: 310 DDPGNGHSVYQMPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQRFH 468 DDPG+ H +P ++V I+ LS +D CS R +W + S D VW FH Sbjct: 17 DDPGSWHEESHLPIDVVHQIVTILSERDTCSLGRCSRYWHAICSSDVVW--FH 67
>tr|A7S147|A7S147_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g165143 PE=4 SV=1 Length = 320
Score = 42.0 bits (97), Expect = 0.031 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +1
Query: 334 VYQMPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQ 459 + P +++NI + L IK LC+A + C W HLG +W+ Sbjct: 11 ICSFPDNVMLNIFRYLDIKALCAASKVCRRWYHLGKDRSLWK 52
>tr|A7TNL2|A7TNL2_VANPO Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_1070p11 PE=4 SV=1 Length = 666
Score = 41.6 bits (96), Expect = 0.040 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +1
Query: 343 MPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQRFHESN-DTPIPLPRWG 507 +P EI + IL L + LC+A C W++L D VW R E + D P WG Sbjct: 135 LPQEISLKILSYLDCQSLCNAAIVCRSWKNLADDDRVWYRLCEQHIDRKCPNCGWG 190
>tr|A8N441|A8N441_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_08791 PE=4 SV=1 Length = 1120
Score = 40.4 bits (93), Expect = 0.089 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = +1
Query: 340 QMPPEIVVNILKRLSIKDLCSAMRTCHWWQHLGSQDDVWQRFHESN-DTPIPLP 498 ++P EI+V I+KRL +D+ + R H++ L + +VW E++ DT IP P Sbjct: 20 RLPHEILVEIMKRLEWRDVLAIRRCSHFFHSLSKEREVWVAMLENDLDTRIPRP 73
|