DK954435
Clone id TST39A01NGRL0020_G22
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_G22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATTGGGGGTCTGCTCTTCTGACCGTTTAGGGTTTCGCTACTGCTGTTAGGGTTTCTCCAC
GTGCCATCGTGATTTAGTTCGAGCTACCGTAATTCGGTCTTGTAGATCACTACAGAATTT
CCGTATCGACGCGAGGTTTTGGGACACAGCAGATCTCTCTCGTTCTACTTCAGATCTGTG
TCCAGGAGCTAAGCGAGCTCAGGATTGATGGAGAATATTTATTCTTTCTGGAGTCTAAAT
GACAATAATCGGCGCTCTCCCACTGAGATGCAAGAGGATCAAAGCTGGAAAGTAGCAGCT
ACCAAGCTTGCTTTTGCGGATCAGATGAGGCTGAAGTTTGATAGGTCTAGATCTGATGCG
AAGGTTGTGGCCCCTCATGAGAAGAACATTAAACAAGCAAAGGGACGATCCAAGGGCAGA
GCTGAAGACATGCTGAAGGGGGAAGGTTTCAACCAGAAGTTTTCGGATGGGGATTTGAGA
TATGGAGATTTGGGTCAGAAGCTTGGAGCAGGTAACATGTCAACATCACAGATTGTTGGC
AGTGCAGATAAA
■■Homology search results ■■ -
sp_hit_id Q15UD3
Definition sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Align length 99
Score (bit) 32.0
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954435|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_G22, 5'
(539 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas... 32 2.0
sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Sacchar... 32 2.6
sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium disco... 32 2.6
sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog OS... 30 5.7
sp|Q9UHP6|RTDR1_HUMAN Rhabdoid tumor deletion region protein 1 O... 30 7.5

>sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas
atlantica (strain T6c / BAA-1087) GN=dnaK PE=2 SV=1
Length = 639

Score = 32.0 bits (71), Expect = 2.0
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = +1

Query: 250 RRSPTEMQE-DQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRAE 426
R+ P MQ ++ + A +L+ A Q + +DA P IK + + + E
Sbjct: 253 RKDPLAMQRLKEAGEKAKIELSSAQQTEVNLPYITADAS--GPKHLTIKLTRAKLESLVE 310

Query: 427 DMLKG--EGFNQKFSDGDLRYGDLGQKLGAGNMSTSQIV 537
M+K E Q +D DL GD+ + G + +V
Sbjct: 311 KMVKATLEPLKQALADADLSVGDINDIILVGGQTRMPLV 349


>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2
OS=Saccharomyces cerevisiae GN=SSF2 PE=1 SV=1
Length = 453

Score = 31.6 bits (70), Expect = 2.6
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Frame = +1

Query: 265 EMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKG-----RSKGRAED 429
E + S ++ A + A +MRLK R + + +A +K +K AK R K RAE+
Sbjct: 355 EFVQKSSEEIKALEKRHAAKMRLKEQRRKEQEENIAK-KKAVKDAKKQRKLERRKARAEE 413

Query: 430 MLKGEGFNQKFSDG------DLRYGDLGQKL 504
+G+G + SD D Y D+ + L
Sbjct: 414 QGEGQGKDGAMSDDGSSSSEDEHYSDVPEDL 444


>sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium discoideum
GN=myoM PE=1 SV=1
Length = 1737

Score = 31.6 bits (70), Expect = 2.6
Identities = 19/100 (19%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Frame = +1

Query: 82 SYRNSVL*ITTEFPYRREVLGHSRSLSFYFRSVSRS*ASSGLMENIYSFWSLNDNNRRSP 261
SYR + +F R + +S ++ +++ S ++EN+ S + N+NN+ +
Sbjct: 795 SYRRDFI----QFYSRYNCILNSLNIKINLTNINHSNLCKEILENVNSQYKNNNNNKNNN 850

Query: 262 TEM-----QEDQSWKVAATKLAFADQMRLKFDRSRSDAKV 366
++ ++++ TK+ +D++ + ++ R D+ V
Sbjct: 851 NQIVKITTNSKPTFQIGKTKIFISDELYIYLEKKRYDSLV 890


>sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog
OS=Dictyostelium discoideum GN=wdr61 PE=4 SV=1
Length = 299

Score = 30.4 bits (67), Expect = 5.7
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1

Query: 121 PYRREVLGHSRSLSFYFRSVSRS*----ASSGLMENIYSFWSLNDNNRRSPTEMQEDQSW 288
PY +LGHS SF F V+ S ASSG ++ W + S DQ+W
Sbjct: 216 PYIASLLGHS---SFIFSLVASSNGDLLASSGSIDRKVCIWDIKTRKLDSSFTAHADQTW 272

Query: 289 KVA 297
+A
Sbjct: 273 DLA 275


>sp|Q9UHP6|RTDR1_HUMAN Rhabdoid tumor deletion region protein 1
OS=Homo sapiens GN=RTDR1 PE=2 SV=1
Length = 348

Score = 30.0 bits (66), Expect = 7.5
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = -3

Query: 492 QISISQIPIRKLLVETFPL--QHVFSSALGSS--LCLFNVLLMRGHNLRIRSRPIKLQPH 325
Q+ + + ++ +++T L Q + ALGS+ L L LL N+R ++ L
Sbjct: 159 QVEVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVS 218

Query: 324 LIRKSKLGSCYFPAL-ILLHL 265
+ R+ K C+F + IL+HL
Sbjct: 219 ISREGKKQVCHFDVIPILVHL 239


tr_hit_id A9NP04
Definition tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 75
Score (bit) 41.2
E-value 0.035
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954435|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_G22, 5'
(539 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea... 41 0.035
tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citru... 40 0.078
tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solan... 36 1.5
tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medic... 36 1.5
tr|Q3J402|Q3J402_RHOS4 Rod shape-determining protein MreC OS=Rho... 35 3.3
tr|A3PIE7|A3PIE7_RHOS1 Rod shape-determining protein MreC OS=Rho... 35 3.3
tr|Q70AN6|Q70AN6_RHOSH MreC protein OS=Rhodobacter sphaeroides G... 35 3.3
tr|Q8G712|Q8G712_BIFLO Putative uncharacterized protein OS=Bifid... 34 4.3
tr|B3DU84|B3DU84_BIFLD Subtilisin-like serine protease OS=Bifido... 34 4.3
tr|A4WSY0|A4WSY0_RHOS5 Rod shape-determining protein MreC OS=Rho... 34 4.3
tr|Q3T552|Q3T552_BIFLO Endo-alpha-N-acetylgalactosaminidase OS=B... 34 4.3
tr|B2C4I9|B2C4I9_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 34 4.3
tr|B2C4I3|B2C4I3_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 34 4.3
tr|B2C4I2|B2C4I2_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 34 4.3
tr|B2C4I1|B2C4I1_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 34 4.3
tr|B2C4I0|B2C4I0_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 34 4.3
tr|B2C4H8|B2C4H8_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 34 4.3
tr|B2C4H7|B2C4H7_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 34 4.3
tr|B2C4H6|B2C4H6_BIFLO EngBF (Fragment) OS=Bifidobacterium longu... 34 4.3
tr|Q231A2|Q231A2_TETTH Protein kinase domain containing protein ... 34 5.6
tr|Q119N5|Q119N5_TRIEI Band 7 protein OS=Trichodesmium erythraeu... 33 9.5
tr|A3ZX61|A3ZX61_9PLAN Putative uncharacterized protein OS=Blast... 33 9.5

>tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 273

Score = 41.2 bits (95), Expect = 0.035
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +1

Query: 208 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 387
M + ++FW L ++ R +E DQ+W +AA+KLA +Q R K DR S + E
Sbjct: 1 MVDSFAFWQLGESLRGLSSE---DQNWTLAASKLATFEQTRGKSDRINSLEPKTSYAE-- 55

Query: 388 IKQAKGRSKGRAEDM 432
+K G+S G+ E++
Sbjct: 56 VKHRGGKSNGKLEEV 70


>tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citrus
paradisi PE=2 SV=1
Length = 305

Score = 40.0 bits (92), Expect = 0.078
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +1

Query: 208 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 387
M+N++SFW L D R + EDQSW AA++L A+Q R K +R N
Sbjct: 1 MDNMHSFWQLGD-ELRGQSRTSEDQSWLRAASRL--AEQTRFKGERM-----------NN 46

Query: 388 IKQAKGRSKGRAEDML------KGEGFNQKFS 465
+ +KG ++ R D + E FN F+
Sbjct: 47 LDLSKGMTEIRPRDKIMYHEDNNFESFNFNFN 78


>tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solanum
tuberosum PE=2 SV=1
Length = 298

Score = 35.8 bits (81), Expect = 1.5
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1

Query: 208 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLA----FADQMRLKFDRSRSDAKV 366
MEN+ S+W D R ++ ED W AA KL+ + + R D S+S A++
Sbjct: 1 MENMQSYWQFGD-ELRGQSKASEDHKWSTAALKLSEQMKYKGERRNNLDLSKSSAEI 56


>tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 302

Score = 35.8 bits (81), Expect = 1.5
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Frame = +1

Query: 208 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 387
M+N++SFW L D R ++ ED W + A+KLA + R K +R N
Sbjct: 1 MDNMHSFWQLGD-ELRGHSKASEDHKWLMVASKLA---EQRSKAERF-----------NN 45

Query: 388 IKQAKGRSKGRAEDMLKGEGFNQ--KFSDGDLRYGDLGQKLGAGNMSTSQI 534
+ +KG + R D GF + KF +L +L K NMS S +
Sbjct: 46 LDLSKGPLETRPRDKF---GFQEENKFDTLNLSMLNLDSKF-TENMSKSSL 92


>tr|Q3J402|Q3J402_RHOS4 Rod shape-determining protein MreC
OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
NCIB 8253 / DSM 158) GN=mreC PE=4 SV=1
Length = 300

Score = 34.7 bits (78), Expect = 3.3
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Frame = +1

Query: 199 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 378
+G++EN S+ + + N+ E+Q+ ++WK AA +L + L ++ R D K+ H
Sbjct: 67 AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 379 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYGDLG--QKLGAGNMSTSQIV 537
+ A S R + +L G DG +G ++ +TS+++
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDGWATMDGIGLVGRISGVGRTTSRVI 178


>tr|A3PIE7|A3PIE7_RHOS1 Rod shape-determining protein MreC
OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=Rsph17029_1002 PE=4 SV=1
Length = 300

Score = 34.7 bits (78), Expect = 3.3
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Frame = +1

Query: 199 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 378
+G++EN S+ + + N+ E+Q+ ++WK AA +L + L ++ R D K+ H
Sbjct: 67 AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 379 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYGDLG--QKLGAGNMSTSQIV 537
+ A S R + +L G DG +G ++ +TS+++
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDGWATMDGIGLVGRISGVGRTTSRVI 178


>tr|Q70AN6|Q70AN6_RHOSH MreC protein OS=Rhodobacter sphaeroides
GN=mreC PE=4 SV=1
Length = 300

Score = 34.7 bits (78), Expect = 3.3
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Frame = +1

Query: 199 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 378
+G++EN S+ + + N+ E+Q+ ++WK AA +L + L ++ R D K+ H
Sbjct: 67 AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 379 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYGDLG--QKLGAGNMSTSQIV 537
+ A S R + +L G DG +G ++ +TS+++
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDGWATMDGIGLVGRISGVGRTTSRVI 178


>tr|Q8G712|Q8G712_BIFLO Putative uncharacterized protein
OS=Bifidobacterium longum GN=BL0464 PE=4 SV=1
Length = 1966

Score = 34.3 bits (77), Expect = 4.3
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1

Query: 244 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 423
NN E+ E +W++A + F Q + F + + K VA + + Q+
Sbjct: 622 NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 671

Query: 424 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMST 525
+LKG G N+ G YGD+GQ+L GA +M+T
Sbjct: 672 --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNT 703


>tr|B3DU84|B3DU84_BIFLD Subtilisin-like serine protease
OS=Bifidobacterium longum (strain DJO10A) GN=aprE PE=4
SV=1
Length = 1937

Score = 34.3 bits (77), Expect = 4.3
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1

Query: 244 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 423
NN E+ E +W++A + F Q + F + + K VA + + Q+
Sbjct: 593 NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 642

Query: 424 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMST 525
+LKG G N+ G YGD+GQ+L GA +M+T
Sbjct: 643 --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNT 674


>tr|A4WSY0|A4WSY0_RHOS5 Rod shape-determining protein MreC
OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=Rsph17025_1601 PE=4 SV=1
Length = 304

Score = 34.3 bits (77), Expect = 4.3
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +1

Query: 199 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 378
+G++EN S+ + + N+ E+Q+ ++WK AA +L + L ++ R D K+ H
Sbjct: 67 AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 379 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDG 471
+ A S R + +L G DG
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDG 154