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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954430
Clone id TST39A01NGRL0020_G17
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_G17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGTTTGTACGATCCGACTGTGTCATCGGTGTGAGAATGGTAAGTTGGAATGGTAGGTCGT
AACAATTGAGAGTTGAAACCCACGCGAAGCAGCAAGCATGGCGACAAAATAAATTGCACA
TCGATCTTGAGTACCTGCAGAGTGTTGAAGTTTTCTATTGCAGGCTATCAGGTTGTCGGG
GACATCCGTTACGTTTAGCAGTTGTTTTGTGATGAAGAAGCTTACTTGTTAGCTTCTCCG
CTCCTCTTGCAGATCTGTGTATCACTCGCGACCCTTTTGCTTTGAGTGTGTGAGGAGGGT
GCTTGATCCCATTGGATCGCAAAAGCTTGACACCATTAGGGCTTCATTTTTGAAGCCCTG
ATCGAACATCAGTTTCTTTATCAGAAGTTTTGTGTACAACACCTGGGGATTGTGAAGTAG
ATTGCTGCTTGTCTCCTTCACAGTTGGCTGACCTCGGTAATCTATCCTTTCCTGCGATAT
AGGACAGTGATATGGAGTCTAGCAGGAAT
■■Homology search results ■■ -
sp_hit_id Q7RX84
Definition sp|Q7RX84|CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 OS=Neurospora crassa
Align length 93
Score (bit) 34.3
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954430|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_G17, 5'
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7RX84|CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 OS=Neurosp...    34   0.35 
sp|A4IIB1|SDA1_XENTR Protein SDA1 homolog OS=Xenopus tropicalis ...    30   5.0  
sp|Q86W24|NAL14_HUMAN NACHT, LRR and PYD domains-containing prot...    30   5.0  
sp|A5WUT8|K1632_DANRE UPF0493 protein KIAA1632 homolog OS=Danio ...    30   5.0  
sp|P87515|POLN_BFV Non-structural polyprotein OS=Barmah forest v...    30   6.6  
sp|Q6B966|NAL14_MOUSE NACHT, LRR and PYD domains-containing prot...    30   6.6  
sp|Q5R7F8|CKAP2_PONAB Cytoskeleton-associated protein 2 OS=Pongo...    30   6.6  
sp|Q2VPG3|SDA1_XENLA Protein SDA1 homolog OS=Xenopus laevis GN=s...    30   8.6  

>sp|Q7RX84|CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 OS=Neurospora
           crassa GN=cwc-22 PE=3 SV=1
          Length = 1010

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = -2

Query: 478 IAGKDRLPRSANCEGD-----KQQSTSQSPGVVHKTSDKETDVRSGLQK*SPNGVKLLRS 314
           + G+   PR  +  GD     K+++ +  P  V    +K  D R+  QK     +  LRS
Sbjct: 134 LRGQPPPPRHRDAGGDYRPVRKERTPTPPPVAVKTEEEKLADARAEYQK-----LLNLRS 188

Query: 313 NGIKHPPHTLKAKGSRVIHRSARGAEKLTSKLL 215
            G+  PPH L+A  + +  +  R  +++  + L
Sbjct: 189 QGVYLPPHRLRALQAAITDKKTREYQRMAWEAL 221


>sp|A4IIB1|SDA1_XENTR Protein SDA1 homolog OS=Xenopus tropicalis
           GN=sdad1 PE=2 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -2

Query: 490 SLSYIAGKDRLPRS-ANCEGDKQQSTSQSPGVVHKTSDKETDVRSGLQK*SPNGVKLLRS 314
           +L +  GKD   +  ++ E + +  T++   V + T  K T  +  L+K     +K+L+ 
Sbjct: 217 ALKFFLGKDEEEKKDSDSESEDEGPTARDLMVRYSTGKKNTKNKKKLEK----AMKVLKK 272

Query: 313 NGIKHPPHTLKAKGSRVIHRSARGAEKLTSKL 218
           +  K  P         ++H     AEKL  +L
Sbjct: 273 HKKKKRPEVFNFSAIHLVHDPQEFAEKLLKQL 304


>sp|Q86W24|NAL14_HUMAN NACHT, LRR and PYD domains-containing protein
           14 OS=Homo sapiens GN=NLRP14 PE=2 SV=1
          Length = 1093

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = -2

Query: 334 GVKLLRSNGIKHPPHTLKAKGSRVIHRSARGAEKLTSKLLHHKT 203
           GVKL+ S+ ++H   TLK+   R  H ++  +E L++ LLH+K+
Sbjct: 859 GVKLM-SDALQHAQCTLKSLVLRRCHFTSLSSEYLSTSLLHNKS 901


>sp|A5WUT8|K1632_DANRE UPF0493 protein KIAA1632 homolog OS=Danio rerio
            GN=si:dkey-165i4.3 PE=3 SV=1
          Length = 2532

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -2

Query: 505  LLDSISLSYIAGKDRLPRSANCEGDKQQSTSQSPGVVHKTSD--KETDVRSGLQK*SPNG 332
            LL+ +   YI  +D+L     C G   Q       +  K S   K   V++ +Q    + 
Sbjct: 1527 LLEVLPQLYINREDQLSMQLECRGKSGQPCQGPANITVKYSSMHKLEPVQNQIQS-LKSD 1585

Query: 331  VKLLRSNGIKHPPHTL 284
            +K L+++GIK PP +L
Sbjct: 1586 IKQLQADGIKAPPQSL 1601


>sp|P87515|POLN_BFV Non-structural polyprotein OS=Barmah forest virus
            PE=2 SV=2
          Length = 2410

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 174  NLIACNRKLQHS--AGTQDRCAIYFVAMLAASRGFQLSIVTTYHSNLP 37
            N+I  NR+L HS  A  + R A         +RG+ + +V+ Y+ NLP
Sbjct: 1133 NIIPINRRLPHSLVATHEYRRAARAEEFFTTTRGYTMLLVSEYNMNLP 1180


>sp|Q6B966|NAL14_MOUSE NACHT, LRR and PYD domains-containing protein
           14 OS=Mus musculus GN=Nlrp14 PE=2 SV=1
          Length = 993

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = -2

Query: 334 GVKLLRSNGIKHPPHTLKAKGSRVIHRSARGAEKLTSKLLHHKT 203
           G+KLL S+ +KHP  TL++   R    +  G+E L++ LLH+++
Sbjct: 760 GIKLL-SHTLKHPQCTLQSLVLRSCSFTPIGSEHLSTALLHNRS 802


>sp|Q5R7F8|CKAP2_PONAB Cytoskeleton-associated protein 2 OS=Pongo
           abelii GN=CKAP2 PE=2 SV=1
          Length = 682

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -1

Query: 74  NSQLLRPTIPTYHSHTDDTV 15
           N+QL+RP I ++HS+T DTV
Sbjct: 248 NTQLVRPPIRSHHSNTQDTV 267


>sp|Q2VPG3|SDA1_XENLA Protein SDA1 homolog OS=Xenopus laevis
           GN=sdad1 PE=2 SV=1
          Length = 689

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -2

Query: 490 SLSYIAGKDR-LPRSANCEGDKQQSTSQSPGVVHKTSDKETDVRSGLQK*SPNGVKLLRS 314
           +L +  GKD    + ++ E + +  T++   V + T  K T  +  L K     +K+L+ 
Sbjct: 217 ALKFFLGKDEDEKKDSDSESEDEGPTARDLMVRYSTGKKNTKNKKKLDK----AMKVLKK 272

Query: 313 NGIKHPPHTLKAKGSRVIHRSARGAEKLTSKL 218
           +  K  P         ++H     AEKL  +L
Sbjct: 273 HKKKKRPEVFNFSAIHLVHDPQEFAEKLLKQL 304
tr_hit_id B8MQ17
Definition tr|B8MQ17|B8MQ17_9EURO PAP/25A associated domain family OS=Talaromyces stipitatus ATCC 10500
Align length 107
Score (bit) 35.0
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954430|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_G17, 5'
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8MQ17|B8MQ17_9EURO PAP/25A associated domain family OS=Talar...    35   2.1  
tr|Q9GLM0|Q9GLM0_PIG Decay-accelerating factor CD55 OS=Sus scrof...    35   2.7  
tr|Q29BH4|Q29BH4_DROPS GA19019 OS=Drosophila pseudoobscura pseud...    34   3.6  
tr|B4GNY4|B4GNY4_DROPE GL13775 OS=Drosophila persimilis GN=GL137...    34   3.6  

>tr|B8MQ17|B8MQ17_9EURO PAP/25A associated domain family
            OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_054190 PE=4
            SV=1
          Length = 1073

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 26/107 (24%), Positives = 51/107 (47%)
 Frame = -2

Query: 481  YIAGKDRLPRSANCEGDKQQSTSQSPGVVHKTSDKETDVRSGLQK*SPNGVKLLRSNGIK 302
            Y+ G+    R ++ +  + +S  +S  + + TS+KET   S   +  PNGV   + NG+ 
Sbjct: 916  YVNGEYSPSRHSHQQRHQGKSNDKSSTMGNHTSNKETLSSSPTHRSRPNGVDSDKPNGVN 975

Query: 301  HPPHTLKAKGSRVIHRSARGAEKLTSKLLHHKTTAKRNGCPRQPDSL 161
            H  H +     +   ++++ A    +    ++  A+    PR+PD L
Sbjct: 976  H--HNIHNHNHKPKLKASQDAHAGPALSPLNRKDAQPASLPRKPDGL 1020


>tr|Q9GLM0|Q9GLM0_PIG Decay-accelerating factor CD55 OS=Sus scrofa
           PE=2 SV=1
          Length = 498

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 28/104 (26%), Positives = 39/104 (37%)
 Frame = -2

Query: 457 PRSANCEGDKQQSTSQSPGVVHKTSDKETDVRSGLQK*SPNGVKLLRSNGIKHPPHTLKA 278
           P + N    +  STSQ P   + ++ + T           +  + LR  G   P HT K 
Sbjct: 374 PTTVNVPAPEVPSTSQKPSTANDSAPQATSTTQRFTTAKASLTQTLRETGKSTPVHTSKT 433

Query: 277 KGSRVIHRSARGAEKLTSKLLHHKTTAKRNGCPRQPDSLQ*KTS 146
           KG +         ++LTS    H T  K    PR   S    TS
Sbjct: 434 KGLQ---------QRLTSA---HVTATKYPAIPRATTSFHSSTS 465


>tr|Q29BH4|Q29BH4_DROPS GA19019 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA19019 PE=4 SV=2
          Length = 1381

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = -2

Query: 307 IKHPPHTLKAKGSRVIHRSARGAEKLTSKLLHHKTTAKRNGCPRQPDSLQ*KTSTLCRYS 128
           I+H P  +   G+ ++H  +  A  ++   L    T K NGCP   D ++      CR  
Sbjct: 233 IRHVPQVIARSGTALVHFFSDDAYNMSGFNL----TYKMNGCPTDSDEVECSGHGKCRDG 288

Query: 127 RSMCNLFCRHACCFAWVSTLNCYD 56
             +C+   R   C       NC +
Sbjct: 289 DCICDPMYRGEACNMAACPGNCME 312


>tr|B4GNY4|B4GNY4_DROPE GL13775 OS=Drosophila persimilis GN=GL13775
           PE=4 SV=1
          Length = 1381

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = -2

Query: 307 IKHPPHTLKAKGSRVIHRSARGAEKLTSKLLHHKTTAKRNGCPRQPDSLQ*KTSTLCRYS 128
           I+H P  +   G+ ++H  +  A  ++   L    T K NGCP   D ++      CR  
Sbjct: 233 IRHVPQVIARSGTALVHFFSDDAYNMSGFNL----TYKMNGCPTDSDEVECSGHGKCRDG 288

Query: 127 RSMCNLFCRHACCFAWVSTLNCYD 56
             +C+   R   C       NC +
Sbjct: 289 DCICDPMYRGEACNMAACPGNCME 312