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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954303
Clone id TST39A01NGRL0020_B10
Library
Length 589
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_B10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGTGAGGAGACGAGGAAGAAGACGACTATCGAGCTCGAGGAGGAGAGTACCTACATGGTT
CTGGCTACGCTGAAGAAGTGATGGTGTGCAGCAGCTTTGAGGGCGTAGGCTGGGGCGCTG
CATTGACGAGAAGAGCGAGGCAGGAAGAGGCAACCGACCCGCTGGTAGTGCTGGGGCTGG
ACCTCTTCTTCACTAACGTCCTTCCGCGCCTCGATGCACCATCGCTAGCGGCCTGCATCG
CAGTCTGCTCGGCTTGGCGCGCCTGCTGCACTTCTGACCTCCTCTGGGCCCCCCTGTTGT
CCCGCCTCCTATCTCTACGTGCCCACCTCCCCCTCCCCCTCCTCCGCTCCCCCTCCCACC
TCTCCCCTTACCACGCCTTCTCAATCACCATGCTCGACGCATCCTAGGTGGAGCTCTCTC
CTGTAGAGATGTGTGCTCGAATTTGGGAGATGAAGGTGAAACCTACTTGTGGACCTTACT
GGCATTCATTGGATCCTACATCCCGTGATGAAGATCCTTTGCTTCTACGCTTTCAATGCG
ACTTCAGTGTCACGCCAATGCAAGACAATGACCCTTTATGGGGTGGCCA
■■Homology search results ■■ -
sp_hit_id P71691
Definition sp|P71691|Y1422_MYCTU UPF0052 protein Rv1422/MT1465 OS=Mycobacterium tuberculosis
Align length 46
Score (bit) 33.9
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954303|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_B10, 5'
         (589 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P71691|Y1422_MYCTU UPF0052 protein Rv1422/MT1465 OS=Mycobacte...    34   0.62 
sp|Q9FL82|FB270_ARATH F-box protein At5g39250 OS=Arabidopsis tha...    31   4.0  
sp|Q6NKN8|FB132_ARATH F-box protein At2g41170 OS=Arabidopsis tha...    30   6.8  
sp|Q7S7C5|PFA3_NEUCR Palmitoyltransferase PFA3 OS=Neurospora cra...    30   6.9  
sp|Q8AYM8|OPSG2_DANRE Green-sensitive opsin-2 OS=Danio rerio GN=...    30   8.9  
sp|Q9Y297|FBW1A_HUMAN F-box/WD repeat-containing protein 1A OS=H...    30   8.9  
sp|Q9XIN8|FB119_ARATH F-box protein At2g27310 OS=Arabidopsis tha...    30   8.9  

>sp|P71691|Y1422_MYCTU UPF0052 protein Rv1422/MT1465
           OS=Mycobacterium tuberculosis GN=Rv1422 PE=3 SV=1
          Length = 342

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +3

Query: 126 TRRARQEEATDPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAWRA 263
           TR+A        LVVLG   +FT+V+P +  P LAA +   SA RA
Sbjct: 177 TRQAVDAIMAADLVVLGPGSWFTSVIPHVLVPGLAAALRATSARRA 222


>sp|Q9FL82|FB270_ARATH F-box protein At5g39250 OS=Arabidopsis
           thaliana GN=At5g39250 PE=2 SV=1
          Length = 252

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 NVLPRLDAPSLAACIAVCSAWRACCTSD 278
           NV P L+   LA+C+ VC  WR     D
Sbjct: 9   NVFPLLEGEDLASCMGVCKQWRDIARDD 36


>sp|Q6NKN8|FB132_ARATH F-box protein At2g41170 OS=Arabidopsis
           thaliana GN=At2g41170 PE=2 SV=1
          Length = 371

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 111 WGAALTRRARQEEATDPLVVLGL-DLFFTNVLPRLDAPSLAACIAVCSAWRACCTSD 278
           W     R+ + +E  + + +L L DL    +L +L    L A  +VCS  R  C SD
Sbjct: 40  WRKETKRKKKNQEDENKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSD 96


>sp|Q7S7C5|PFA3_NEUCR Palmitoyltransferase PFA3 OS=Neurospora crassa
           GN=pfa-3 PE=3 SV=2
          Length = 598

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 143 GRGNRPAGSAGAGPLLH*RPSAPRCTI 223
           GR  RPAG++G G L H RP   R  I
Sbjct: 544 GRWGRPAGASGVGLLAHGRPGGARSPI 570


>sp|Q8AYM8|OPSG2_DANRE Green-sensitive opsin-2 OS=Danio rerio
           GN=opn1mw2 PE=1 SV=1
          Length = 349

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 381 SITMLDAS*VELSPVEMCARIWEMKVKPTCGPYWHSLDPTSRDEDPLLLRFQCDFSV 551
           + T + AS   + P+   +R     ++ +CGP +++L+P   +E  +L  F C F V
Sbjct: 158 AFTWVMASSCAVPPLFGWSRYIPEGMQTSCGPDYYTLNPEFNNESYVLYMFSCHFCV 214


>sp|Q9Y297|FBW1A_HUMAN F-box/WD repeat-containing protein 1A OS=Homo
           sapiens GN=BTRC PE=1 SV=1
          Length = 605

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 141 QEEATDPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAW 257
           Q +    L   GLD    N+L  LDA SL A   VC  W
Sbjct: 177 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEW 215


>sp|Q9XIN8|FB119_ARATH F-box protein At2g27310 OS=Arabidopsis
           thaliana GN=At2g27310 PE=2 SV=1
          Length = 337

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 156 DPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAWRACCTSD 278
           D +  L  D+  T +L RLD P+LA+     S  +  CT +
Sbjct: 10  DSISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEE 50
tr_hit_id A9TMN0
Definition tr|A9TMN0|A9TMN0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 143
Score (bit) 89.4
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954303|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_B10, 5'
         (589 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TMN0|A9TMN0_PHYPA Predicted protein OS=Physcomitrella paten...    89   1e-16
tr|A3BH02|A3BH02_ORYSJ Putative uncharacterized protein OS=Oryza...    53   1e-05
tr|A2YIK7|A2YIK7_ORYSI Putative uncharacterized protein OS=Oryza...    53   1e-05
tr|B6TYX2|B6TYX2_MAIZE F-box domain containing protein OS=Zea ma...    52   3e-05
tr|A7NXQ6|A7NXQ6_VITVI Chromosome chr5 scaffold_2, whole genome ...    51   6e-05
tr|Q69LC4|Q69LC4_ORYSJ Os07g0170800 protein OS=Oryza sativa subs...    45   0.002
tr|B8AH23|B8AH23_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|B7QF61|B7QF61_IXOSC Lipid exporter ABCA1, putative OS=Ixodes ...    35   4.1  
tr|Q1B9C9|Q1B9C9_MYCSS Putative uncharacterized protein OS=Mycob...    34   5.3  
tr|A3PZ95|A3PZ95_MYCSJ Putative uncharacterized protein OS=Mycob...    34   5.3  
tr|A1UFN4|A1UFN4_MYCSK Putative uncharacterized protein OS=Mycob...    34   5.3  
tr|A0QWV8|A0QWV8_MYCS2 Putative uncharacterized protein OS=Mycob...    34   5.3  
tr|A2Z439|A2Z439_ORYSI Putative uncharacterized protein OS=Oryza...    34   5.3  
tr|Q7U041|Q7U041_MYCBO Putative uncharacterized protein Mb1457 O...    34   7.0  
tr|A5U2C4|A5U2C4_MYCTA Putative uncharacterized protein OS=Mycob...    34   7.0  
tr|A1KIL1|A1KIL1_MYCBP Putative uncharacterized protein BCG_1483...    34   7.0  
tr|A4KGX8|A4KGX8_MYCTU Putative uncharacterized protein OS=Mycob...    34   7.0  
tr|A1QRE3|A1QRE3_MYCTF Putative uncharacterized protein OS=Mycob...    34   7.0  

>tr|A9TMN0|A9TMN0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170879 PE=4 SV=1
          Length = 302

 Score = 89.4 bits (220), Expect = 1e-16
 Identities = 49/143 (34%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
 Frame = +3

Query: 168 VLGLDLFFTNVLPRLDAPSLAACIAVCSAWRACCTSDXXXXXXXXXXXXXXXXXXXXXXX 347
           VLG+DL   ++L  LDA SLA C  VCS WRA   +D                       
Sbjct: 78  VLGVDLLQCHILTLLDARSLARCATVCSRWRALAITDKLWQPLVAAFLAQRAHLPLCLLG 137

Query: 348 XXXXXXX---YHAFSITMLDAS*VELSPVEMCARIWEMKVKPTCGPYWHSLDPTSRDEDP 518
                     +H +++ + ++    L P E+C R WE+++KP CGPYW S D T   +  
Sbjct: 138 RDDVSSRLSQHHLYTLAVTESRQNTLLPTELCGRTWELRLKPPCGPYWLSFDSTQVGKPG 197

Query: 519 LLLRFQCDFSVTPMQDNDPLWGG 587
           L   F CD S+T     DP+WGG
Sbjct: 198 LNRYFNCDGSIT-CDPGDPIWGG 219


>tr|A3BH02|A3BH02_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022324 PE=4 SV=1
          Length = 249

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 37/153 (24%), Positives = 58/153 (37%)
 Frame = +3

Query: 129 RRARQEEATDPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAWRACCTSDXXXXXXXXXX 308
           RR R+    DP+ VLG ++    V+  LDA S+A C AV  AWR     D          
Sbjct: 32  RRRRRGGEEDPVDVLGEEVM-GRVMELLDARSVARCTAVSRAWRGVAADD--RLWAPKCA 88

Query: 309 XXXXXXXXXXXXXXXXXXXXYHAFSITMLDAS*VELSPVEMCARIWEMKVKPTCGPYWHS 488
                                  +S+ + D     ++  ++C   WE +       YW +
Sbjct: 89  ELMAGKAHIPRLTMIPTASKLSTYSMAIADGKRTRITKEDLCDHDWEFRFTIAAPEYWRN 148

Query: 489 LDPTSRDEDPLLLRFQCDFSVTPMQDNDPLWGG 587
           LDP+ +   P + R+           +D +WGG
Sbjct: 149 LDPSWKHTGPPMRRYFHPDGYHSADPHDAVWGG 181


>tr|A2YIK7|A2YIK7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25057 PE=4 SV=1
          Length = 249

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 37/153 (24%), Positives = 58/153 (37%)
 Frame = +3

Query: 129 RRARQEEATDPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAWRACCTSDXXXXXXXXXX 308
           RR R+    DP+ VLG ++    V+  LDA S+A C AV  AWR     D          
Sbjct: 32  RRRRRGGEEDPVDVLGEEVM-GRVMELLDARSVARCTAVSRAWRGVAADD--RLWAPKCA 88

Query: 309 XXXXXXXXXXXXXXXXXXXXYHAFSITMLDAS*VELSPVEMCARIWEMKVKPTCGPYWHS 488
                                  +S+ + D     ++  ++C   WE +       YW +
Sbjct: 89  ELMAGKAHIPRLTMIPTASKLSTYSMAIADGKRTRITKEDLCDHDWEFRFTIAAPEYWRN 148

Query: 489 LDPTSRDEDPLLLRFQCDFSVTPMQDNDPLWGG 587
           LDP+ +   P + R+           +D +WGG
Sbjct: 149 LDPSWKHTGPPMRRYFHPDGYHSADPHDAVWGG 181


>tr|B6TYX2|B6TYX2_MAIZE F-box domain containing protein OS=Zea mays
           PE=2 SV=1
          Length = 243

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 5/164 (3%)
 Frame = +3

Query: 111 WGAALTRRARQEE-----ATDPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAWRACCTS 275
           W      R R++E     A+DP+  LG D+    V+  LDA S+A C AV  AWR     
Sbjct: 15  WERRKRGRKREKERQVGWASDPVEALGEDVM-GRVMEFLDARSVARCTAVSCAWRGVAAD 73

Query: 276 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHAFSITMLDAS*VELSPVEMCARIWEMK 455
           +                                 +S+ ++D     ++  ++C   WE +
Sbjct: 74  NRLWAPMCTELMAGKAHIPRLTSIRTGSKLS--TYSMVIMDGKRSRITKEDLCDHAWEYR 131

Query: 456 VKPTCGPYWHSLDPTSRDEDPLLLRFQCDFSVTPMQDNDPLWGG 587
                  YW +LDP+ +   P + R+           +D +WGG
Sbjct: 132 FTIAAPDYWRNLDPSWKHTGPPMRRYFHPDGYHSADPHDAVWGG 175


>tr|A7NXQ6|A7NXQ6_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020432001
           PE=4 SV=1
          Length = 275

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 34/150 (22%), Positives = 54/150 (36%)
 Frame = +3

Query: 138 RQEEATDPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAWRACCTSDXXXXXXXXXXXXX 317
           + E   DPL V G D+    +L  LDAPS+A  + V   W    +SD             
Sbjct: 57  KSEVLQDPLEVFGSDMMMM-ILSYLDAPSVALSLLVSRGWHGVASSDRLWSTKCEELWCG 115

Query: 318 XXXXXXXXXXXXXXXXXYHAFSITMLDAS*VELSPVEMCARIWEMKVKPTCGPYWHSLDP 497
                             ++FS+  +D     ++  ++C  +W          YW +LDP
Sbjct: 116 KAHIPRVSQERGLSKLAAYSFSV--MDGKRSRITKDDLCDHVWNFHFNRGAPDYWRNLDP 173

Query: 498 TSRDEDPLLLRFQCDFSVTPMQDNDPLWGG 587
             +   P + R+            D +WGG
Sbjct: 174 YWKGTGPPMRRYFHPDGSQTADPGDQVWGG 203


>tr|Q69LC4|Q69LC4_ORYSJ Os07g0170800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0050F10.35 PE=4 SV=1
          Length = 199

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 29/130 (22%), Positives = 46/130 (35%)
 Frame = +3

Query: 198 VLPRLDAPSLAACIAVCSAWRACCTSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHA 377
           V+  LDA S+A C AV  AWR     D                                 
Sbjct: 4   VMELLDARSVARCTAVSRAWRGVAADD--RLWAPKCAELMAGKAHIPRLTMIPTASKLST 61

Query: 378 FSITMLDAS*VELSPVEMCARIWEMKVKPTCGPYWHSLDPTSRDEDPLLLRFQCDFSVTP 557
           +S+ + D     ++  ++C   WE +       YW +LDP+ +   P + R+        
Sbjct: 62  YSMAIADGKRTRITKEDLCDHDWEFRFTIAAPEYWRNLDPSWKHTGPPMRRYFHPDGYHS 121

Query: 558 MQDNDPLWGG 587
              +D +WGG
Sbjct: 122 ADPHDAVWGG 131


>tr|B8AH23|B8AH23_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05730 PE=4 SV=1
          Length = 343

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 12  EEEDDYRARGGEYLHGSGYAEEVMVCSSFEGVGWGAALTRRARQEEATDPLVVLGL---- 179
           E E++ R    E   G  +AEEV   S        AA++    Q  AT     LG     
Sbjct: 33  EGEEEERVVEAEVGGGELWAEEVEASSPAT-----AAISVAKVQHIATPTATQLGAAAMN 87

Query: 180 DLFFTNVLPRLDAPSLAACIAVCSAWRACCTSD 278
           D     +L RL A S+  C AVC +WR   T+D
Sbjct: 88  DDVVAEILLRLPAKSVLRCRAVCRSWRRITTAD 120


>tr|B7QF61|B7QF61_IXOSC Lipid exporter ABCA1, putative OS=Ixodes
           scapularis GN=IscW_ISCW012940 PE=4 SV=1
          Length = 538

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -3

Query: 299 QQGGPEEVRSAAGAPSRADCDAGR*RWCIEARKDVSEEEVQPQHYQRVGCLFLPR 135
           +QG  +  RS  G P   DC        ++A KD S   V+PQ  QRVG L L R
Sbjct: 323 EQGSDDPDRSDGGTPELPDCPCA----LVDANKDCSGG-VRPQFRQRVGALLLKR 372


>tr|Q1B9C9|Q1B9C9_MYCSS Putative uncharacterized protein
           OS=Mycobacterium sp. (strain MCS) GN=Mmcs_2397 PE=4 SV=1
          Length = 340

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +3

Query: 126 TRRARQEEATDPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAWRA 263
           TR+A     +  LVVLG   +FT+V+P +  P LAA +   SA RA
Sbjct: 177 TRQAVDAIMSADLVVLGPGSWFTSVIPHVLVPELAAALRATSARRA 222


>tr|A3PZ95|A3PZ95_MYCSJ Putative uncharacterized protein
           OS=Mycobacterium sp. (strain JLS) GN=Mjls_2438 PE=4 SV=1
          Length = 340

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +3

Query: 126 TRRARQEEATDPLVVLGLDLFFTNVLPRLDAPSLAACIAVCSAWRA 263
           TR+A     +  LVVLG   +FT+V+P +  P LAA +   SA RA
Sbjct: 177 TRQAVDAIMSADLVVLGPGSWFTSVIPHVLVPELAAALRATSARRA 222