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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954280
Clone id TST39A01NGRL0020_A11
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_A11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTATGAAGCCCGTTTCCTATGTCCTGTTTGCTGCTCTGATCGTGGTGGTGGTGCTGGTC
ATACGCTTTGGCTGGGCTCCCTTCCTCCTCCTGCGCTTTGCCCAGTTCTTCGGCGGCACC
TTCGCCAACCTCATTCAGGCAGTGAGCGGCTCCCAGGTGCCCACCTCCGACCTGGTGGGC
ACCGACTGGTACACCTTCTCCCTCTTCATCCCATGCCTGTATTTCATAGCCGTGTTTTGT
GAGGCCACAGGGCTTCAGCAATGGCTTCTTCGTTATGTGATCTGCCCGTCCCAGATCACA
CGCGCAGCGTTTGTCCTATCCCTGATTGACCACCGCCACCCACGGCTTGTCCTGCTCACA
TTTTCCATAGGTATGGCTTTGAGATTGGTGTTCCCCAGACCGCAGCACGCCCCTGAATTG
GCCCTGTCCAATCGGATCTCCTGCAGATTTGCTGAGTTTTTCTTCTACATGACCCTCCCC
ACACAAGCACAGATCTGGCATTGGCATTATATGGTACCTCTAGCCCTCCTCGTCTGCGTG
AGCAGGACTAATGAGGTGTTTTGGATATGGAGAAGCTGTCATGAAAGAGATCAGCTGCCG
CGACCAAGAGAGAAAGCGGTTGG
■■Homology search results ■■ -
sp_hit_id Q4WP96
Definition sp|Q4WP96|SPT5_ASPFU Transcription elongation factor spt5 OS=Aspergillus fumigatus
Align length 61
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954280|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_A11, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4WP96|SPT5_ASPFU Transcription elongation factor spt5 OS=Asp...    33   1.2  
sp|Q9WTY2|REM2_RAT GTP-binding protein REM 2 OS=Rattus norvegicu...    32   2.6  
sp|Q8VEL9|REM2_MOUSE GTP-binding protein REM 2 OS=Mus musculus G...    32   2.6  
sp|P36032|MCH2_YEAST Probable transporter MCH2 OS=Saccharomyces ...    32   2.6  
sp|P61036|LNT_RHOPA Apolipoprotein N-acyltransferase OS=Rhodopse...    31   4.5  
sp|P32019|I5P2_HUMAN Type II inositol-1,4,5-trisphosphate 5-phos...    31   5.9  
sp|Q6ZTR0|YG017_HUMAN Putative uncharacterized protein MGC9712 O...    30   7.7  
sp|B1KKR3|MNMC_SHEWM tRNA 5-methylaminomethyl-2-thiouridine bios...    30   7.7  

>sp|Q4WP96|SPT5_ASPFU Transcription elongation factor spt5
            OS=Aspergillus fumigatus GN=spt5 PE=3 SV=1
          Length = 1058

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -2

Query: 535  RRGGLEVPYNANARSVLVW-GGSCRRKTQQICRRSDWTGPIQGRAAVW-GTPISKPYLWK 362
            R+GG  VPY A+A     W GG          R   W G    R   W G   S+   WK
Sbjct: 824  RKGGQRVPYGASAAPPSGWSGGRTPMAAADSSRTPAWGGASSARTPAWAGISGSRTPAWK 883

Query: 361  M 359
            M
Sbjct: 884  M 884


>sp|Q9WTY2|REM2_RAT GTP-binding protein REM 2 OS=Rattus norvegicus
           GN=Rem2 PE=1 SV=1
          Length = 272

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 151 SRSLPE*GWRRCRRRTGQSAGGGR--EPSQSV*PAPPPRSEQQTGHRKR 11
           +R L E   R+ R R G+   GG+  EPS    PAPP R E  T   KR
Sbjct: 198 TRELFEGAVRQIRLRRGRGHAGGQRPEPSSPDGPAPPTRRESLTKKAKR 246


>sp|Q8VEL9|REM2_MOUSE GTP-binding protein REM 2 OS=Mus musculus
           GN=Rem2 PE=2 SV=1
          Length = 272

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 151 SRSLPE*GWRRCRRRTGQSAGGGR--EPSQSV*PAPPPRSEQQTGHRKR 11
           +R L E   R+ R R G+   GG+  EPS    PAPP R E  T   KR
Sbjct: 198 TRELFEGAVRQIRLRRGRGHAGGQRPEPSSPDGPAPPTRRESLTKKAKR 246


>sp|P36032|MCH2_YEAST Probable transporter MCH2 OS=Saccharomyces
           cerevisiae GN=MCH2 PE=1 SV=1
          Length = 473

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 109 FGGTFANLIQAVSGSQVPTSDLVGTDWYTFSLFIPCLYFIAVFCEATGLQQWLLR-YVIC 285
           F   FA L+  + G ++ ++D  G D+Y  ++F+   YF    C      QWLLR ++I 
Sbjct: 381 FMAAFA-LVAPIIGLELRSTDTNGNDYYRTAIFVGFAYFGVSLC------QWLLRGFIIA 433

Query: 286 PSQI 297
             +I
Sbjct: 434 RDEI 437


>sp|P61036|LNT_RHOPA Apolipoprotein N-acyltransferase
           OS=Rhodopseudomonas palustris GN=lnt PE=3 SV=1
          Length = 536

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
 Frame = +1

Query: 118 TFANLIQAVSGSQ------VPTSDLVGTDWYTFSLFIPCLYFIA-VFCEATGLQQWLLRY 276
           TF   +  + GS       VP + + G  W+ F  F+P LY+I   F        WLL  
Sbjct: 49  TFPIAVWLIDGSAAGKRRGVPAAAMAGW-WFGFGYFVPGLYWIGYAFLVDADTFAWLLPA 107

Query: 277 VIC--PSQI---TRAAFVLSLIDHRHPRLVLLTFSIGMAL 381
            IC  P+ +   T   F L+ +  R   L +L+ ++ + +
Sbjct: 108 AICGLPAYLALFTALGFALARLLWRPDSLRILSLAVSLTI 147


>sp|P32019|I5P2_HUMAN Type II inositol-1,4,5-trisphosphate
           5-phosphatase OS=Homo sapiens GN=INPP5B PE=1 SV=3
          Length = 993

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 538 RRRGGLEVPYNANARSVLVWGGSCRRKTQQICRRSDWTGPIQGRAA 401
           ++R GLE      A SVL WGG+  +   ++  R+   G + GR+A
Sbjct: 184 KKRWGLEEARPQGAGSVLFWGGAMEKTGFRLMERAHGGGFVWGRSA 229


>sp|Q6ZTR0|YG017_HUMAN Putative uncharacterized protein MGC9712
           OS=Homo sapiens PE=5 SV=1
          Length = 466

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
 Frame = -2

Query: 193 CTSRCPPGRRWAPG-----SRSLPE*GWRR 119
           C S  PP  RW PG     +R+LP   WRR
Sbjct: 297 CPSLLPPRARWGPGFEEPRTRALPAGSWRR 326


>sp|B1KKR3|MNMC_SHEWM tRNA 5-methylaminomethyl-2-thiouridine
           biosynthesis bifunctional protein mnmC OS=Shewanella
           woodyi (strain ATCC 51908 / MS32) GN=mnmC PE=3 SV=1
          Length = 696

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -3

Query: 417 FRGVLRSGEHQSQSHTYGKCEQDKPWVAVVNQG*DKRCACDLGRADHITKKPLLKPCG-- 244
           F GVL++G  Q  S    K    +PW   +  G D+  + +L   D I K  +  P G  
Sbjct: 368 FCGVLQTGFDQRSSARLEKIITAQPWNKQIAHGVDRHESSNLAGID-IDKAGIFYPLGGW 426

Query: 243 LTKHGYEIQAWDEEGEGVPVGAH 175
           +  H +   A+D+  +   V AH
Sbjct: 427 ICPHEFTQAAFDKASQLSDVSAH 449
tr_hit_id B5HZT6
Definition tr|B5HZT6|B5HZT6_9ACTO Putative uncharacterized protein OS=Streptomyces sviceus ATCC 29083
Align length 69
Score (bit) 37.7
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954280|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_A11, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5HZT6|B5HZT6_9ACTO Putative uncharacterized protein OS=Strep...    38   0.56 
tr|Q28CC2|Q28CC2_XENTR Serine/arginine repetitive matrix 1 (Frag...    35   4.7  
tr|A6RW09|A6RW09_BOTFB Predicted protein OS=Botryotinia fuckelia...    35   4.7  
tr|Q8BPZ2|Q8BPZ2_MOUSE Putative uncharacterized protein (Fragmen...    34   6.2  
tr|Q3BRD2|Q3BRD2_XANC5 Putative uncharacterized protein OS=Xanth...    34   6.2  
tr|B2KBZ3|B2KBZ3_ELUMP Sulfatase OS=Elusimicrobium minutum (stra...    34   6.2  
tr|A8HYV0|A8HYV0_CHLRE Predicted protein (Fragment) OS=Chlamydom...    34   6.2  
tr|Q08MS8|Q08MS8_STIAU Putative uncharacterized protein OS=Stigm...    34   8.0  
tr|Q0JJL3|Q0JJL3_ORYSJ Os01g0731900 protein OS=Oryza sativa subs...    34   8.0  
tr|Q0DRS7|Q0DRS7_ORYSJ Os03g0358700 protein OS=Oryza sativa subs...    34   8.0  

>tr|B5HZT6|B5HZT6_9ACTO Putative uncharacterized protein
           OS=Streptomyces sviceus ATCC 29083 GN=SSEG_04827 PE=4
           SV=1
          Length = 288

 Score = 37.7 bits (86), Expect = 0.56
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -2

Query: 199 RRCTSRCPPGRRWAPGSRSLPE*GWRRCRRRTGQSAGGGREPS----QSV*PAPPPRSEQ 32
           RR + + PPG R  PG   LP     R  R  G +    R PS    +SV P PPPR  +
Sbjct: 138 RRPSRQEPPGGRRRPGPWRLPSARRPRWHRSLGPARARRRSPSGTAPRSVPPPPPPRRPR 197

Query: 31  QTGHRKRAS 5
             G R  A+
Sbjct: 198 PPGARHNAA 206


>tr|Q28CC2|Q28CC2_XENTR Serine/arginine repetitive matrix 1
           (Fragment) OS=Xenopus tropicalis GN=srrm1 PE=2 SV=1
          Length = 816

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 30/96 (31%), Positives = 40/96 (41%)
 Frame = -2

Query: 295 SGTGRSHNEEAIAEALWPHKTRL*NTGMG*RGRRCTSRCPPGRRWAPGSRSLPE*GWRRC 116
           SG+  S  +E       P +  + N  +G R R   SR P   R  P   S       R 
Sbjct: 488 SGSSSSSEDER------PKRISVKNGEVGRRRRHSASRSPSASRKRPKESS------PRR 535

Query: 115 RRRTGQSAGGGREPSQSV*PAPPPRSEQQTGHRKRA 8
           RRR+       R  S S  PAPPPR  + +  R+R+
Sbjct: 536 RRRSPSPPPSRRRRSPS--PAPPPRRRRSSSQRRRS 569


>tr|A6RW09|A6RW09_BOTFB Predicted protein OS=Botryotinia fuckeliana
           (strain B05.10) GN=BC1G_04796 PE=4 SV=1
          Length = 423

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 246 GLTKHGYEIQAWDEEGEGVPVGAHQVGGGHLGAAHCLNEVGEGAAEELGK 97
           GL+  G E+   DE+  GV      V  G  G A+ + E GEG  E +GK
Sbjct: 130 GLSMGGLEVLVRDEDIGGVGSEGGDVAVGRFGDANGVEEAGEGEGERIGK 179


>tr|Q8BPZ2|Q8BPZ2_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=Pgap1 PE=2 SV=1
          Length = 170

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 26/65 (40%), Positives = 28/65 (43%)
 Frame = -2

Query: 199 RRCTSRCPPGRRWAPGSRSLPE*GWRRCRRRTGQSAGGGREPSQSV*PAPPPRSEQQTGH 20
           R  TSR   G RW   +RS P  G R    R GQ          S  P PPPR    T  
Sbjct: 95  RAHTSRASLGLRWNAPTRSSP--GTRSLLLRAGQGI------LASATPRPPPRLRTPTSD 146

Query: 19  RKRAS 5
           R+RAS
Sbjct: 147 RQRAS 151


>tr|Q3BRD2|Q3BRD2_XANC5 Putative uncharacterized protein
           OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
           GN=XCV2950 PE=4 SV=1
          Length = 472

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +1

Query: 328 DHRHPRLVL------LTFSIGMALRLVFPRPQHAPELALSNRISCRFAEFFFYMTLPTQA 489
           D +H ++VL      L F   +ALR V     H  EL ++ R+SCR      YM     A
Sbjct: 383 DGQHVQIVLGADDKHLRFRSSVALRRV---GTHEIELTMATRVSCRNGFGRVYMACIHHA 439

Query: 490 QIWHWHYMVPLALLVCVSR 546
              H HY+VP  L   V R
Sbjct: 440 ---HHHYVVPTMLRAAVGR 455


>tr|B2KBZ3|B2KBZ3_ELUMP Sulfatase OS=Elusimicrobium minutum (strain
           Pei191) GN=Emin_0565 PE=4 SV=1
          Length = 581

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
 Frame = +1

Query: 172 LVGTDWYTFSLFIPCLYFIAVFCEATGLQQWLLRYVICPSQITRAAFVLSLIDHR--HPR 345
           L+G     F + +  LYF+ V C+ T L  +  R+     Q    A    + D+R     
Sbjct: 72  LIGIRKKWFYIVVLFLYFVIVSCDITLLMYFKERFGAKYLQTVEGADYGFMTDYRVIGYV 131

Query: 346 LVLLTFSIGMALRLVFP--RPQHAPELALSNRISCRFAEFFFYMTLPTQAQIWHWHYMVP 519
           L L+ +S+   L+L+ P  +PQ A  +  +  +   F    FY  LP Q   +  + + P
Sbjct: 132 LFLIIYSVTAVLKLLKPVSKPQAADRIWKAFILFLLFLFIPFYNLLPAQKTFYSKYLLTP 191

Query: 520 LALLV 534
             + +
Sbjct: 192 TPIYI 196


>tr|A8HYV0|A8HYV0_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_142490 PE=4
           SV=1
          Length = 317

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 121 RCRRRTGQSAGGGREPSQSV*PAPPPRS-EQQTGHRKRA 8
           RCR RTG +A GGR  S    P PP RS + Q G RK A
Sbjct: 113 RCRVRTGAAAAGGRPSS----PPPPARSGKAQEGRRKVA 147


>tr|Q08MS8|Q08MS8_STIAU Putative uncharacterized protein
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_6429 PE=4
           SV=1
          Length = 578

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
 Frame = -2

Query: 184 RCPPGRRWAPGSRSL------PE*GW--RRCRRRTGQSAGGGREPS--QSV*PAPPPRSE 35
           R PPGRR  PG+ S       P  G   RR  R TG+     REP    S   +PP  S 
Sbjct: 494 RRPPGRRLTPGNSSRRSASGPPSAGRSPRRAPRHTGRPR-NAREPGACSSRATSPPAASA 552

Query: 34  QQTGHRKRAS 5
            +TGHR R +
Sbjct: 553 LRTGHRPRCT 562


>tr|Q0JJL3|Q0JJL3_ORYSJ Os01g0731900 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0731900 PE=4 SV=1
          Length = 203

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -2

Query: 211 G*RGRRCTSRCPPGRRWAPGSRSLPE*GWRRCRRRTGQSAGGGR 80
           G RG      C  G  W  G  SL   G+ R +R+TG+  GGGR
Sbjct: 160 GIRGGARVLECGTGLAWLAGFASLRPTGYGRGKRQTGRRPGGGR 203


>tr|Q0DRS7|Q0DRS7_ORYSJ Os03g0358700 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0358700 PE=4 SV=1
          Length = 326

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 207 EEGEGVPVGAHQVGGGHLGAAHCLNEVGEGAAE-ELGKAQEEEGSPAK 67
           E   G  V  H++GG  +   H L + G G  E ELG+A  + G P +
Sbjct: 226 EARHGGEVARHELGGDVVHVVHALRQAGAGVVERELGEADGQAGPPGR 273