NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954229
Clone id TST39A01NGRL0019_O06
Library
Length 618
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_O06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATGGCGGAGCCTTCAGATGATTGGCCCTCTCTTGCGCCAATACGCACTTCTTGCAGCGCT
AGCAGTAGCAGCATTGACCTGAGCAGTAGCTTCCACTCTATCGCTTCCTCTGGATCTCAT
CACCTCTCTTTAGCCCGCAGATCATCAATATGTACAGAGCGCTCATTTCCTTCTCCATCT
TCCTCTTCTTCCTCTTCATCCCATCTTAAAAGCTTCCTCTCTAGCAGCAGCACCACCACT
TCTAAGGGTCCTGGCCTTCTTTCCAAATGTCTCCCTCCAAGGCCCATCAATGCTGGTTCA
CGTCCTGGTTTCCCCAGACAATCCATGAGCGGAAGCCCGGCAGCAAGGTTGCCGCCGCGG
CCAGGCAGCGGAGGTGCCTTCCAATCATTCGCAAGCTTCCCCGGCGCACGCGGATCGGCC
CATAGTGCTGCCCCTGCTGCGGCCTCTGCGTCTGCTTTGACATTGCATTCTGCACCTCTC
CATGGCAATGACACTGCTTGCAAAGGCCATCTGATAAACCTCCATGCATTTACGATGATA
CCCGCAGCTGCCGTCGGCAAGAAGAAGCCCCTTGATTACATTTCTGATGAGCCCACCTCC
CCTGAAGTCACTTGCATG
■■Homology search results ■■ -
sp_hit_id A4FM34
Definition sp|A4FM34|IF2_SACEN Translation initiation factor IF-2 OS=Saccharopolyspora erythraea (strain NRRL 23338)
Align length 54
Score (bit) 33.5
E-value 0.91
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954229|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_O06, 5'
         (618 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4FM34|IF2_SACEN Translation initiation factor IF-2 OS=Saccha...    33   0.91 
sp|Q8BH27|MEGF9_MOUSE Multiple epidermal growth factor-like doma...    33   1.5  
sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-pro...    32   2.0  
sp|A3D786|MUTS_SHEB5 DNA mismatch repair protein mutS OS=Shewane...    32   3.4  
sp|Q0I7K2|IF2_SYNS3 Translation initiation factor IF-2 OS=Synech...    32   3.5  
sp|Q0RDS4|IF2_FRAAA Translation initiation factor IF-2 OS=Franki...    32   3.5  
sp|A6WR19|MUTS_SHEB8 DNA mismatch repair protein mutS OS=Shewane...    31   4.5  
sp|Q9H1U4|MEGF9_HUMAN Multiple epidermal growth factor-like doma...    31   4.5  
sp|Q62407|SPEG_MOUSE Striated muscle-specific serine/threonine-p...    31   4.5  
sp|P65131|IF2_MYCTU Translation initiation factor IF-2 OS=Mycoba...    31   4.5  
sp|A5U6J1|IF2_MYCTA Translation initiation factor IF-2 OS=Mycoba...    31   4.5  
sp|A1KMI2|IF2_MYCBP Translation initiation factor IF-2 OS=Mycoba...    31   4.5  
sp|P65132|IF2_MYCBO Translation initiation factor IF-2 OS=Mycoba...    31   4.5  
sp|Q8GX37|FH9_ARATH Formin-like protein 9 OS=Arabidopsis thalian...    31   5.9  
sp|A9KYG1|MUTS_SHEB9 DNA mismatch repair protein mutS OS=Shewane...    30   7.6  
sp|Q9SGS5|Y1607_ARATH Uncharacterized protein At1g76070 OS=Arabi...    30   7.7  
sp|Q91W39|NCOA5_MOUSE Nuclear receptor coactivator 5 OS=Mus musc...    30   7.7  
sp|Q9HCD5|NCOA5_HUMAN Nuclear receptor coactivator 5 OS=Homo sap...    30   7.7  
sp|Q73VV4|IF2_MYCPA Translation initiation factor IF-2 OS=Mycoba...    30   7.7  
sp|A0QIY2|IF2_MYCA1 Translation initiation factor IF-2 OS=Mycoba...    30   7.7  
sp|P48634|BAT2_HUMAN Large proline-rich protein BAT2 OS=Homo sap...    30   7.7  
sp|Q0HXG1|MUTS_SHESR DNA mismatch repair protein mutS OS=Shewane...    30   9.9  
sp|Q8EBR9|MUTS_SHEON DNA mismatch repair protein mutS OS=Shewane...    30   9.9  

>sp|A4FM34|IF2_SACEN Translation initiation factor IF-2
           OS=Saccharopolyspora erythraea (strain NRRL 23338)
           GN=infB PE=3 SV=1
          Length = 1027

 Score = 33.5 bits (75), Expect = 0.91
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +1

Query: 271 LPPRPINAGSRPGFPRQSM------SGSPAARLPPRPGSGGAFQSFASFPGARG 414
           +PP+P +    P  PR         SG+PA R PPRPG GG  +     PG  G
Sbjct: 200 VPPKPQSPKPGPRSPRVGNNPFGVGSGAPAQR-PPRPGPGGGQRQGGQGPGRGG 252


>sp|Q8BH27|MEGF9_MOUSE Multiple epidermal growth factor-like domains
           9 OS=Mus musculus GN=Megf9 PE=2 SV=1
          Length = 600

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 514 SDGLCKQCHCHGEVQNAMSKQTQRPQQGQ 428
           SD +C QC CHG V    + +  +P+ G+
Sbjct: 391 SDSICTQCECHGHVDPIKTPKICKPESGE 419


>sp|Q63638|SPEG_RAT Striated muscle-specific
           serine/threonine-protein kinase OS=Rattus norvegicus
           GN=Speg PE=2 SV=2
          Length = 3259

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 298 SRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASFPGARG 414
           SRP  P+ S + SPAA  PP P   G        P +RG
Sbjct: 542 SRPSIPKTSRAVSPAATQPPPPSGAGKSGDETGRPRSRG 580


>sp|A3D786|MUTS_SHEB5 DNA mismatch repair protein mutS OS=Shewanella
           baltica (strain OS155 / ATCC BAA-1091) GN=mutS PE=3 SV=1
          Length = 856

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 20/84 (23%), Positives = 36/84 (42%)
 Frame = -3

Query: 598 RWAHQKCNQGASSCRRQLRVSS*MHGGLSDGLCKQCHCHGEVQNAMSKQTQRPQQGQHYG 419
           RW HQ          RQ  V+  +     +GL +Q    G+++  M++   R  + + + 
Sbjct: 311 RWIHQPLRDPKHIQARQQAVTELLDTAAHEGLHEQLKALGDIERIMARLALRTARPRDFA 370

Query: 418 PIRVRRGSLRMIGRHLRCLAAAAT 347
            +R   G L  + + L  L+A  T
Sbjct: 371 RLRQALGLLPELQKSLSTLSAPHT 394


>sp|Q0I7K2|IF2_SYNS3 Translation initiation factor IF-2
           OS=Synechococcus sp. (strain CC9311) GN=infB PE=3 SV=1
          Length = 1129

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +1

Query: 274 PPRPINAGSRPGFPRQSMS-----GSPAARLPPRPGSGGAFQSFASFPGA 408
           P RP NA S+PG PR   S     G P  R     G+GG        PGA
Sbjct: 289 PTRPGNAPSKPGQPRSGASSLELVGKPIRRDGSNDGAGGRSDGQGRPPGA 338


>sp|Q0RDS4|IF2_FRAAA Translation initiation factor IF-2 OS=Frankia
           alni (strain ACN14a) GN=infB PE=3 SV=1
          Length = 1021

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
 Frame = +1

Query: 274 PPRP--INAGSRPGFPRQSMSGSPAAR-----LPPRPGS-GGAFQSFASFPGARG 414
           PPRP     G RPG PR    G+   R     +PPRPGS  G        PG  G
Sbjct: 236 PPRPGAPRPGPRPGGPRPGAPGAGGPRPSPGSMPPRPGSRPGGSGGMPPRPGGSG 290


>sp|A6WR19|MUTS_SHEB8 DNA mismatch repair protein mutS OS=Shewanella
           baltica (strain OS185) GN=mutS PE=3 SV=1
          Length = 856

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/84 (23%), Positives = 36/84 (42%)
 Frame = -3

Query: 598 RWAHQKCNQGASSCRRQLRVSS*MHGGLSDGLCKQCHCHGEVQNAMSKQTQRPQQGQHYG 419
           RW HQ          RQ  V+  +     +GL +Q    G+++  M++   R  + + + 
Sbjct: 311 RWIHQPLRDPKHIKARQQAVTELLDTAAHEGLHEQLKALGDIERIMARLALRTARPRDFA 370

Query: 418 PIRVRRGSLRMIGRHLRCLAAAAT 347
            +R   G L  + + L  L+A  T
Sbjct: 371 RLRQALGLLPELQQSLSTLSAPHT 394


>sp|Q9H1U4|MEGF9_HUMAN Multiple epidermal growth factor-like domains
           9 OS=Homo sapiens GN=MEGF9 PE=2 SV=3
          Length = 602

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 511 DGLCKQCHCHGEVQNAMSKQTQRPQQGQ 428
           D +C++C CHG V    + +  +P+ G+
Sbjct: 394 DSICRKCQCHGHVDPVKTPKICKPESGE 421


>sp|Q62407|SPEG_MOUSE Striated muscle-specific
           serine/threonine-protein kinase OS=Mus musculus GN=Speg
           PE=1 SV=2
          Length = 3262

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 298 SRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASFPGARG 414
           SRP  P+ S + SPAA  PP P   G        P +RG
Sbjct: 542 SRPSTPKTSRAVSPAATQPPPPSGAGKSGDEPGRPRSRG 580


>sp|P65131|IF2_MYCTU Translation initiation factor IF-2
           OS=Mycobacterium tuberculosis GN=infB PE=3 SV=1
          Length = 900

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 274 PPRPINAGSRPGFPRQSMSGSPAARLPPRPGS--GGA 378
           PP P    +RPG PR    G+    +PPRPG   GGA
Sbjct: 170 PPAPRPGTARPGVPR---PGASPGSMPPRPGGAVGGA 203
tr_hit_id Q8NJ48
Definition tr|Q8NJ48|Q8NJ48_9ASCO Chitin synthase OS=ericoid mycorrhizal fungus PSIV
Align length 41
Score (bit) 36.2
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954229|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_O06, 5'
         (618 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8NJ48|Q8NJ48_9ASCO Chitin synthase OS=ericoid mycorrhizal fu...    36   1.6  
tr|A3B5V8|A3B5V8_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.7  
tr|B2A943|B2A943_PODAN Predicted CDS Pa_1_8350 OS=Podospora anse...    35   3.6  
tr|A1CEI2|A1CEI2_ASPCL Nuclear pore complex subunit Nup159, puta...    35   3.6  
tr|Q5YTJ0|Q5YTJ0_NOCFA Putative uncharacterized protein OS=Nocar...    34   6.1  
tr|Q5RGE7|Q5RGE7_DANRE Novel protein similar to vertebrate SH3 a...    34   7.9  
tr|A7MM91|A7MM91_ENTS8 Putative uncharacterized protein OS=Enter...    34   7.9  
tr|Q84Q90|Q84Q90_ORYSJ Putative uncharacterized protein OJ1041F0...    34   7.9  
tr|Q10NP6|Q10NP6_ORYSJ Os03g0263500 protein OS=Oryza sativa subs...    34   7.9  
tr|B8AKD3|B8AKD3_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.9  
tr|Q583R3|Q583R3_9TRYP Putative uncharacterized protein OS=Trypa...    34   7.9  

>tr|Q8NJ48|Q8NJ48_9ASCO Chitin synthase OS=ericoid mycorrhizal
           fungus PSIV GN=chs PE=3 SV=1
          Length = 1087

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 19/41 (46%), Positives = 19/41 (46%)
 Frame = +1

Query: 277 PRPINAGSRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASF 399
           P  IN   RPG P     GSP   LPP P   GA  S  SF
Sbjct: 210 PPEINGSPRPGTPSSRYGGSPRRPLPPAPLFAGANSSRTSF 250


>tr|A3B5V8|A3B5V8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018430 PE=4 SV=1
          Length = 316

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 18/62 (29%)
 Frame = +1

Query: 280 RPINAGSRP----------GFPRQSMSGSPA--------ARLPPRPGSGGAFQSFASFPG 405
           RP+NA + P          G PR+S  GSP          RLP +PG GG   S A  PG
Sbjct: 112 RPLNAAATPPLTRSPRPAGGSPRRSDRGSPVREQPLGSVGRLPRQPGLGGGLASVAEQPG 171

Query: 406 AR 411
            +
Sbjct: 172 CQ 173


>tr|B2A943|B2A943_PODAN Predicted CDS Pa_1_8350 OS=Podospora
           anserina PE=4 SV=1
          Length = 197

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 304 PGFP-RQSMSGSPAARLPPRPGSGGAFQSFASFPGARG 414
           PGFP      G+P    PP PG GG F   A FPGA G
Sbjct: 139 PGFPGAPGFPGAPGRGAPPPPGFGGGFPP-AGFPGAPG 175


>tr|A1CEI2|A1CEI2_ASPCL Nuclear pore complex subunit Nup159,
           putative OS=Aspergillus clavatus GN=ACLA_089730 PE=4
           SV=1
          Length = 1493

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +1

Query: 292 AGSRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASFPG 405
           A S PGF + S +G P A   P  GSGG F SFA   G
Sbjct: 578 APSTPGFGQPSPAGKPLAFGAPSAGSGGGFGSFAGGGG 615


>tr|Q5YTJ0|Q5YTJ0_NOCFA Putative uncharacterized protein OS=Nocardia
           farcinica GN=NFA_36530 PE=4 SV=1
          Length = 399

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 274 PPRPINAGSRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASFPGARG 414
           P + + +GS P  P     GSP +  P  PGS    Q   S PG  G
Sbjct: 276 PGQTVPSGSHPSSPGSGSPGSPGSGSPGSPGSAATPQPGRSIPGVPG 322


>tr|Q5RGE7|Q5RGE7_DANRE Novel protein similar to vertebrate SH3 and
           multiple ankyrin repeat domains family protein
           (Fragment) OS=Danio rerio GN=si:dkey-153k10.1 PE=4 SV=2
          Length = 1601

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 271 LPPRPINAGSRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASF-PGA 408
           +PP P  A   P  P    SG P + LPP P S  A QS +SF PGA
Sbjct: 819 IPPPPQTAPPPPPTPYFLDSGPPPSFLPPPPPSRAANQSRSSFRPGA 865


>tr|A7MM91|A7MM91_ENTS8 Putative uncharacterized protein
           OS=Enterobacter sakazakii (strain ATCC BAA-894)
           GN=ESA_00184 PE=4 SV=1
          Length = 414

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 INAGSRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASFPG 405
           +  GS P     + SG+P  RLPP  GSG +  S ++F G
Sbjct: 352 LKGGSAPAASDDNNSGNPLLRLPPASGSGNSGASNSAFSG 391


>tr|Q84Q90|Q84Q90_ORYSJ Putative uncharacterized protein
           OJ1041F02.15 (Putative uncharacterized protein) OS=Oryza
           sativa subsp. japonica GN=OJ1041F02.15 PE=4 SV=1
          Length = 351

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 LPPRPINAGSRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASFPGA 408
           +PP P+  G++P  P   ++  P   +PP P +GGA  +F   PGA
Sbjct: 295 IPPPPVG-GTQPPPPPPPLANGPPRSIPPPPMTGGAMANFT--PGA 337


>tr|Q10NP6|Q10NP6_ORYSJ Os03g0263500 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0263500 PE=2 SV=1
          Length = 321

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 LPPRPINAGSRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASFPGA 408
           +PP P+  G++P  P   ++  P   +PP P +GGA  +F   PGA
Sbjct: 265 IPPPPVG-GTQPPPPPPPLANGPPRSIPPPPMTGGAMANFT--PGA 307


>tr|B8AKD3|B8AKD3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10848 PE=4 SV=1
          Length = 322

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 271 LPPRPINAGSRPGFPRQSMSGSPAARLPPRPGSGGAFQSFASFPGA 408
           +PP P+  G++P  P   ++  P   +PP P +GGA  +F   PGA
Sbjct: 265 IPPPPVG-GTQPPPPPPPLANGPPRSIPPPPMTGGAMANFT--PGA 307