DK954222
Clone id TST39A01NGRL0019_N23
Library
Length 614
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_N23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CTCTCTCTCTCTCTGTGTGTGTGTGTGTGGGCGCGCGCGCGCCATGTCTATACGTGACTC
TGTCCGCTTTCACGCCAAGCTCAACAAGTGGTATCAGAAATGGGCTTGCCGCTCCCCACT
TTCCCCATCGCACGTAGCTCCCCTCGGAGCCTTGAAGTTTTCTTTTTCTGTTTTTTTGAG
CTTGAATCCGCAAAAGAAAACGAGCAGCAGAAATCAAGCAGTGCTGTATTGAGATTGAGC
AGCTGGCAGTACTGAGGCAAGTCGTTGCAAAAATTGCAGCACTTCAGAGTCCAGGAGAAG
TGAATGCAATAAAAGGGGGCGTTTTTGCGTCCAAATCGAGCAAGGCAGAGGCAAACAAGC
CCCCATTTTCTTCTTGGTGGATGTGCGCATGAAGGCACTGCAGGGTTCCAAGTTGAGAGT
CTCCAAGCTCTGTTCTAGAGTGTCTGGCGCGGGTTTCTGCTCCTTCTTGACTATGGGTTG
GAGGGCAGGCTTGAGCTTTGTAGAAAATAAGGTTTCTCCTGGCCTCGCTGACATAGTCCT
TGTAGTAGCAATGATGCTCGGAGGAATGGATGCCATGGCTTGCTCAAACGGAGTGCACAT
GTACACATCATCCA
■■Homology search results ■■ -
sp_hit_id Q897C2
Definition sp|Q897C2|TPL_CLOTE Tyrosine phenol-lyase OS=Clostridium tetani
Align length 49
Score (bit) 33.1
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954222|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_N23, 5'
(614 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q897C2|TPL_CLOTE Tyrosine phenol-lyase OS=Clostridium tetani ... 33 1.2
sp|Q9CMK9|TPL_PASMU Tyrosine phenol-lyase OS=Pasteurella multoci... 33 1.5
sp|Q2J322|GRPE_RHOP2 Protein grpE OS=Rhodopseudomonas palustris ... 32 2.0
sp|A9M463|FMT_NEIM0 Methionyl-tRNA formyltransferase OS=Neisseri... 32 2.6
sp|Q8RHM6|TPL_FUSNN Tyrosine phenol-lyase OS=Fusobacterium nucle... 32 3.4
sp|Q13E58|GRPE_RHOPS Protein grpE OS=Rhodopseudomonas palustris ... 32 3.4
sp|Q6NCY6|GRPE_RHOPA Protein grpE OS=Rhodopseudomonas palustris ... 32 3.4
sp|Q3T0A9|SHSA5_BOVIN Protein shisa-5 OS=Bos taurus GN=SHISA5 PE... 31 4.4
sp|Q3IYG9|AROE_RHOS4 Shikimate dehydrogenase OS=Rhodobacter spha... 31 4.4
sp|A3PNT1|AROE_RHOS1 Shikimate dehydrogenase OS=Rhodobacter spha... 31 4.4
sp|Q08897|TPL_SYMTH Tyrosine phenol-lyase OS=Symbiobacterium the... 31 5.8
sp|O08501|TPL_SYMS1 Tyrosine phenol-lyase OS=Symbiobacterium sp.... 31 5.8
sp|Q922Z0|OXDD_MOUSE D-aspartate oxidase OS=Mus musculus GN=Ddo ... 31 5.8
sp|Q99489|OXDD_HUMAN D-aspartate oxidase OS=Homo sapiens GN=DDO ... 31 5.8
sp|P31012|TPL_ESCIN Tyrosine phenol-lyase OS=Escherichia interme... 30 7.5
sp|P31013|TPL_CITFR Tyrosine phenol-lyase OS=Citrobacter freundi... 30 7.5
sp|Q9RLM3|T2D1_NEIMC Putative type-2 restriction enzyme NmeDIP O... 30 7.5
sp|A3DNG9|NEP1_STAMF Probable ribosome biogenesis protein NEP1-l... 30 7.5
sp|A1KRE6|FMT_NEIMF Methionyl-tRNA formyltransferase OS=Neisseri... 30 7.5
sp|Q9K1K6|FMT_NEIMB Methionyl-tRNA formyltransferase OS=Neisseri... 30 7.5
sp|Q9JWY9|FMT_NEIMA Methionyl-tRNA formyltransferase OS=Neisseri... 30 7.5
sp|Q5F5P7|FMT_NEIG1 Methionyl-tRNA formyltransferase OS=Neisseri... 30 7.5
sp|P31011|TPL_ENTAG Tyrosine phenol-lyase OS=Enterobacter agglom... 30 9.8
sp|Q9VIQ9|SICK_DROME Protein sickie OS=Drosophila melanogaster G... 30 9.8
sp|Q02608|RT16_YEAST 37S ribosomal protein S16, mitochondrial OS... 30 9.8
sp|Q804Q5|FEZF2_DANRE Fez family zinc finger protein 2 OS=Danio ... 30 9.8
sp|Q7NQF0|EFG_CHRVO Elongation factor G OS=Chromobacterium viola... 30 9.8
sp|Q0PNE2|CC075_HUMAN UPF0405 protein C3orf75 OS=Homo sapiens GN... 30 9.8

>sp|Q897C2|TPL_CLOTE Tyrosine phenol-lyase OS=Clostridium tetani
GN=tpl PE=3 SV=1
Length = 460

Score = 33.1 bits (74), Expect = 1.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2

Query: 481 PTHSQEGAETRARHSRTELGDSQLGTLQCLHAHIHQEENGGLFASALLD 335
PTH GAE + G G + HQE+NGG+F + D
Sbjct: 98 PTHQGRGAENLLSSIAIKPGQYVAGNMYFTTTRYHQEKNGGIFVDIIRD 146


>sp|Q9CMK9|TPL_PASMU Tyrosine phenol-lyase OS=Pasteurella multocida
GN=tpl PE=3 SV=1
Length = 458

Score = 32.7 bits (73), Expect = 1.5
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -2

Query: 505 FYKAQACPPTHSQEGAETRARHSRTELGDSQLGTLQCLHAHIHQEENGGLFASALLD 335
+Y + PTH GAE + GD G + HQE NG F ++D
Sbjct: 88 YYGFKYVVPTHQGRGAENLLSTIMIKPGDYVPGNMYFTTTRAHQERNGATFVDIIID 144


>sp|Q2J322|GRPE_RHOP2 Protein grpE OS=Rhodopseudomonas palustris
(strain HaA2) GN=grpE PE=3 SV=1
Length = 206

Score = 32.3 bits (72), Expect = 2.0
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3

Query: 588 FEQAMASIP-PSIIATTRTMSARPGETLFSTKLKPALQPIVKKEQKPAP 445
F+QAM +P PS+ A T + G + L+PAL + K KPAP
Sbjct: 148 FQQAMYEVPDPSVPAGTVVQVVQAGFMIGERVLRPALVGVAKGGAKPAP 196


>sp|A9M463|FMT_NEIM0 Methionyl-tRNA formyltransferase OS=Neisseria
meningitidis serogroup C (strain 053442) GN=fmt PE=3
SV=1
Length = 308

Score = 32.0 bits (71), Expect = 2.6
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3

Query: 186 IRKRKRAAEIKQCCIEIEQLAVLRQVVAKIAALQSPGEVNAIK----GGVFASKSSKAEA 353
IR A E+ +EI AV VA + LQS G +NA+K G +A K SK EA
Sbjct: 156 IRPTDTANEVHDALMEIGAAAV----VADLQQLQSKGRLNAVKQPKEGVTYAQKLSKEEA 211


>sp|Q8RHM6|TPL_FUSNN Tyrosine phenol-lyase OS=Fusobacterium
nucleatum subsp. nucleatum GN=tpl PE=3 SV=1
Length = 460

Score = 31.6 bits (70), Expect = 3.4
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2

Query: 481 PTHSQEGAETRARHSRTELGDSQLGTLQCLHAHIHQEENGGLFASALLD 335
PTH GAE + G G + HQE NGG+F + D
Sbjct: 98 PTHQGRGAENILSQIAIKPGQYVPGNMYFTTTRYHQERNGGIFKDIIRD 146


>sp|Q13E58|GRPE_RHOPS Protein grpE OS=Rhodopseudomonas palustris
(strain BisB5) GN=grpE PE=3 SV=1
Length = 206

Score = 31.6 bits (70), Expect = 3.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3

Query: 588 FEQAMASIP-PSIIATTRTMSARPGETLFSTKLKPALQPIVKKEQKPAP 445
F+QAM +P PS+ A T + G + L+PAL + K KPAP
Sbjct: 147 FQQAMYEVPDPSVPAGTVVQVVQAGFMIGERVLRPALVGVSKGGAKPAP 195


>sp|Q6NCY6|GRPE_RHOPA Protein grpE OS=Rhodopseudomonas palustris
GN=grpE PE=3 SV=2
Length = 207

Score = 31.6 bits (70), Expect = 3.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3

Query: 588 FEQAMASIP-PSIIATTRTMSARPGETLFSTKLKPALQPIVKKEQKPAP 445
F+QAM +P PS+ A T + G T+ L+PAL + K K AP
Sbjct: 148 FQQAMYEVPDPSVPAGTVVQVVQAGFTIGDRVLRPALVGVAKGGAKAAP 196


>sp|Q3T0A9|SHSA5_BOVIN Protein shisa-5 OS=Bos taurus GN=SHISA5 PE=2
SV=1
Length = 216

Score = 31.2 bits (69), Expect = 4.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1

Query: 350 LCLARFGRKNAPFYCIHFSWTLKCCNFCNDLPQYC 246
LC+ GRK P+ C F CC CND QYC
Sbjct: 28 LCMISHGRKVDPWVCPDF-----CCGNCND--QYC 55


>sp|Q3IYG9|AROE_RHOS4 Shikimate dehydrogenase OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=aroE PE=3 SV=1
Length = 279

Score = 31.2 bits (69), Expect = 4.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2

Query: 154 QGSEGSYVRWGKWGAASPFLIPLVELGVKADRVTYRHGARA 32
Q G V WG GAA + L+E+GV R+ R ARA
Sbjct: 124 QPQSGPAVVWGAGGAARAVIAALIEVGVPEIRLANRSRARA 164


>sp|A3PNT1|AROE_RHOS1 Shikimate dehydrogenase OS=Rhodobacter
sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=aroE PE=3
SV=1
Length = 279

Score = 31.2 bits (69), Expect = 4.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2

Query: 154 QGSEGSYVRWGKWGAASPFLIPLVELGVKADRVTYRHGARA 32
Q G V WG GAA + L+E+GV R+ R ARA
Sbjct: 124 QPQSGPAVVWGAGGAARAVIAALIEVGVPEIRLANRSRARA 164


tr_hit_id Q8D796
Definition tr|Q8D796|Q8D796_VIBVU Predicted signal transduction protein OS=Vibrio vulnificus
Align length 70
Score (bit) 38.1
E-value 0.41
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954222|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_N23, 5'
(614 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8D796|Q8D796_VIBVU Predicted signal transduction protein OS=... 38 0.41
tr|Q7MEA0|Q7MEA0_VIBVY GGDEF family protein OS=Vibrio vulnificus... 38 0.41
tr|Q7D226|Q7D226_AGRT5 Biopolymer transport protein OS=Agrobacte... 36 1.6
tr|B3MJ56|B3MJ56_DROAN GF11051 OS=Drosophila ananassae GN=GF1105... 35 2.7
tr|Q3HLQ4|Q3HLQ4_TRIMU Phospholipase A2 isoform TM-N49 (Fragment... 35 3.5
tr|A8BE57|A8BE57_GIALA High cysteine membrane protein Group 2 OS... 35 3.5
tr|A7MM16|A7MM16_ENTS8 Putative uncharacterized protein OS=Enter... 35 4.5
tr|B8CB46|B8CB46_THAPS Predicted protein OS=Thalassiosira pseudo... 35 4.5
tr|B6IFV1|B6IFV1_CAEBR Putative uncharacterized protein OS=Caeno... 35 4.5
tr|B0G8T4|B0G8T4_9FIRM Putative uncharacterized protein OS=Dorea... 34 5.9
tr|Q2GRC2|Q2GRC2_CHAGB Predicted protein OS=Chaetomium globosum ... 34 5.9
tr|B7VS12|B7VS12_VIBSP GGDEF family protein OS=Vibrio splendidus... 34 7.7
tr|B7C9E6|B7C9E6_9FIRM Putative uncharacterized protein OS=Eubac... 34 7.7
tr|A5ZSY1|A5ZSY1_9FIRM Putative uncharacterized protein OS=Rumin... 34 7.7
tr|A3Y385|A3Y385_9VIBR GGDEF family protein OS=Vibrio sp. MED222... 34 7.7
tr|A3UW02|A3UW02_VIBSP GGDEF family protein OS=Vibrio splendidus... 34 7.7
tr|Q8LMV5|Q8LMV5_ORYSJ Putative proline-rich cell wall protein O... 34 7.7
tr|Q7G4M5|Q7G4M5_ORYSJ Protease inhibitor/seed storage/LTP famil... 34 7.7
tr|B8BG20|B8BG20_ORYSI Putative uncharacterized protein OS=Oryza... 34 7.7
tr|Q4QBL6|Q4QBL6_LEIMA Putative uncharacterized protein OS=Leish... 34 7.7
tr|Q233B5|Q233B5_TETTH Putative uncharacterized protein OS=Tetra... 34 7.7

>tr|Q8D796|Q8D796_VIBVU Predicted signal transduction protein
OS=Vibrio vulnificus GN=VV2_0264 PE=4 SV=1
Length = 638

Score = 38.1 bits (87), Expect = 0.41
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2

Query: 556 HHCYYKDYVSEARRN---LIFYKAQACPPTHSQEGAETRARHSRTELGDSQLGTLQCLHA 386
HH + Y+ +A RN ++++ + CP TH GAE R S LGD L
Sbjct: 373 HHNQIESYLLQAVRNDDLTLYFQPKVCPQTHKWIGAEALLRWSHPVLGDISNEAL----- 427

Query: 385 HIHQEENGGL 356
IH E GL
Sbjct: 428 -IHMAEQNGL 436


>tr|Q7MEA0|Q7MEA0_VIBVY GGDEF family protein OS=Vibrio vulnificus
(strain YJ016) GN=VVA0770 PE=4 SV=1
Length = 660

Score = 38.1 bits (87), Expect = 0.41
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2

Query: 556 HHCYYKDYVSEARRN---LIFYKAQACPPTHSQEGAETRARHSRTELGDSQLGTLQCLHA 386
HH + Y+ +A RN ++++ + CP TH GAE R S LGD L
Sbjct: 395 HHNQIESYLLQAVRNDDLTLYFQPKVCPQTHKWIGAEALLRWSHPVLGDISNEAL----- 449

Query: 385 HIHQEENGGL 356
IH E GL
Sbjct: 450 -IHMAEQNGL 458


>tr|Q7D226|Q7D226_AGRT5 Biopolymer transport protein
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=exbB PE=3 SV=1
Length = 340

Score = 36.2 bits (82), Expect = 1.6
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3

Query: 591 PFEQAMASIPPSIIATTRTMSARPGETLFSTKLKPA-LQPIVKKEQKPAPDTLEQSLETL 415
P E S P AT +A P T + +PA + + Q PAP +ET+
Sbjct: 29 PTETVQPSQAPVAPATPSAPTAEPSPTAQPSSPQPAQFEQPAQTNQTPAPSETSTPVETV 88

Query: 414 NLEPCSAFMRT 382
N EP SA RT
Sbjct: 89 NAEPASAERRT 99


>tr|B3MJ56|B3MJ56_DROAN GF11051 OS=Drosophila ananassae GN=GF11051
PE=4 SV=1
Length = 1396

Score = 35.4 bits (80), Expect = 2.7
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Frame = -2

Query: 541 KDYVSEARRNLIFY------------KAQACPPTHSQEGAETRARHSRTELGDSQLGTLQ 398
++ V+ ARRNL + K + P EGA ++A H +T G + Q
Sbjct: 869 RELVARARRNLSIFVRIPKEEKPPEVKVEPSPQDKQDEGAASKAAHKKTRRGKKRRAAQQ 928

Query: 397 CLHAHIH 377
LH H H
Sbjct: 929 PLHPHPH 935


>tr|Q3HLQ4|Q3HLQ4_TRIMU Phospholipase A2 isoform TM-N49 (Fragment)
OS=Trimeresurus mucrosquamatus PE=2 SV=1
Length = 138

Score = 35.0 bits (79), Expect = 3.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2

Query: 17 VCVCGRARAMSIRDSVRFHAKLNKWYQKWACRSP 118
+C C +A AM RD+V+ + K N +Y K +C P
Sbjct: 101 ICECDKAAAMCFRDNVKTYKKRNIFYPKSSCTEP 134


>tr|A8BE57|A8BE57_GIALA High cysteine membrane protein Group 2
OS=Giardia lamblia ATCC 50803 GN=GL50803_16721 PE=4 SV=1
Length = 622

Score = 35.0 bits (79), Expect = 3.5
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +2

Query: 266 CKNCSTSESRRSECNKRGRFCVQIEQGRGKQAPIFFLVDVRMKALQGSKLRVSKLCSRVS 445
C CST+ + S C+ G+ C GR + V Q L +LCS VS
Sbjct: 75 CLPCSTTVTHCSRCSADGKSCYSCADGR-----VLKTVSTGQSTTQECFLSQEQLCSAVS 129

Query: 446 GAGFCS 463
G C+
Sbjct: 130 NCGLCT 135


>tr|A7MM16|A7MM16_ENTS8 Putative uncharacterized protein
OS=Enterobacter sakazakii (strain ATCC BAA-894)
GN=ESA_00279 PE=4 SV=1
Length = 246

Score = 34.7 bits (78), Expect = 4.5
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = -2

Query: 445 RHSRTELGDSQLGTLQCLHAHIHQEENGGLFASALL 338
R R GD Q+GTL + I QEENGG A ALL
Sbjct: 209 RSKRNRTGDVQIGTLDQVTEVITQEENGGQNAGALL 244


>tr|B8CB46|B8CB46_THAPS Predicted protein OS=Thalassiosira
pseudonana CCMP1335 GN=THAPSDRAFT_9367 PE=4 SV=1
Length = 1132

Score = 34.7 bits (78), Expect = 4.5
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Frame = -3

Query: 564 PPSIIATTRTMSARPGE-------TLFSTKLKPALQPIVKKEQKPAPDTLEQSLETLNLE 406
PP+I TT + +P T T LKP L P+ K KP+ E S +L+L
Sbjct: 503 PPTISPTTLKPTMKPTPQPVTPPPTPLPTSLKPTLSPVTMKTSKPS--VTESSAPSLSLS 560

Query: 405 PCSA-------FMRTSTKKKMGACLPLPCSIW 331
P S+ +++ K+ C P S+W
Sbjct: 561 PSSSKPTPLQTMPPSNSPTKLVICPPEYQSLW 592


>tr|B6IFV1|B6IFV1_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG27228 PE=4 SV=1
Length = 1131

Score = 34.7 bits (78), Expect = 4.5
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3

Query: 231 EIEQLAVLRQVVAKIAALQSPGEVNAIKGGVFASKSSKAEANKPPFSSWWMCA*RH 398
EI++L +R+ + +Q P EVNAI KS K++ KPP S + C+ H
Sbjct: 211 EIKRLLDIREDSKSVCRVQQPAEVNAINRKSSTDKSQKSQ--KPPPSPCFKCSGNH 264


>tr|B0G8T4|B0G8T4_9FIRM Putative uncharacterized protein OS=Dorea
formicigenerans ATCC 27755 GN=DORFOR_02695 PE=4 SV=1
Length = 604

Score = 34.3 bits (77), Expect = 5.9
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -2

Query: 217 LISAARFLLRIQAQKNRKRKLQGSEGSYVRWGKWGAASPFLIPLVELGV---KADRVTYR 47
L+++A L+ KN K+ QG E RWG PF+ P+ E V + +R+T
Sbjct: 75 LVASALKLVVYYRSKNAKKFRQGVEYGSARWGNRKDIEPFMDPVFENNVILTETERLTMN 134

Query: 46 HGARAPTHTHTE 11
+AP + +
Sbjct: 135 SRPKAPKYARNK 146