DK954222 |
Clone id |
TST39A01NGRL0019_N23 |
Library |
TST39 |
Length |
614 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_N23. 5' end sequence. |
Accession |
DK954222 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CTCTCTCTCTCTCTGTGTGTGTGTGTGTGGGCGCGCGCGCGCCATGTCTATACGTGACTC TGTCCGCTTTCACGCCAAGCTCAACAAGTGGTATCAGAAATGGGCTTGCCGCTCCCCACT TTCCCCATCGCACGTAGCTCCCCTCGGAGCCTTGAAGTTTTCTTTTTCTGTTTTTTTGAG CTTGAATCCGCAAAAGAAAACGAGCAGCAGAAATCAAGCAGTGCTGTATTGAGATTGAGC AGCTGGCAGTACTGAGGCAAGTCGTTGCAAAAATTGCAGCACTTCAGAGTCCAGGAGAAG TGAATGCAATAAAAGGGGGCGTTTTTGCGTCCAAATCGAGCAAGGCAGAGGCAAACAAGC CCCCATTTTCTTCTTGGTGGATGTGCGCATGAAGGCACTGCAGGGTTCCAAGTTGAGAGT CTCCAAGCTCTGTTCTAGAGTGTCTGGCGCGGGTTTCTGCTCCTTCTTGACTATGGGTTG GAGGGCAGGCTTGAGCTTTGTAGAAAATAAGGTTTCTCCTGGCCTCGCTGACATAGTCCT TGTAGTAGCAATGATGCTCGGAGGAATGGATGCCATGGCTTGCTCAAACGGAGTGCACAT GTACACATCATCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q897C2 |
Definition |
sp|Q897C2|TPL_CLOTE Tyrosine phenol-lyase OS=Clostridium tetani |
Align length |
49 |
Score (bit) |
33.1 |
E-value |
1.2 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8D796 |
Definition |
tr|Q8D796|Q8D796_VIBVU Predicted signal transduction protein OS=Vibrio vulnificus |
Align length |
70 |
Score (bit) |
38.1 |
E-value |
0.41 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954222|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0019_N23, 5' (614 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q8D796|Q8D796_VIBVU Predicted signal transduction protein OS=... 38 0.41 tr|Q7MEA0|Q7MEA0_VIBVY GGDEF family protein OS=Vibrio vulnificus... 38 0.41 tr|Q7D226|Q7D226_AGRT5 Biopolymer transport protein OS=Agrobacte... 36 1.6 tr|B3MJ56|B3MJ56_DROAN GF11051 OS=Drosophila ananassae GN=GF1105... 35 2.7 tr|Q3HLQ4|Q3HLQ4_TRIMU Phospholipase A2 isoform TM-N49 (Fragment... 35 3.5 tr|A8BE57|A8BE57_GIALA High cysteine membrane protein Group 2 OS... 35 3.5 tr|A7MM16|A7MM16_ENTS8 Putative uncharacterized protein OS=Enter... 35 4.5 tr|B8CB46|B8CB46_THAPS Predicted protein OS=Thalassiosira pseudo... 35 4.5 tr|B6IFV1|B6IFV1_CAEBR Putative uncharacterized protein OS=Caeno... 35 4.5 tr|B0G8T4|B0G8T4_9FIRM Putative uncharacterized protein OS=Dorea... 34 5.9 tr|Q2GRC2|Q2GRC2_CHAGB Predicted protein OS=Chaetomium globosum ... 34 5.9 tr|B7VS12|B7VS12_VIBSP GGDEF family protein OS=Vibrio splendidus... 34 7.7 tr|B7C9E6|B7C9E6_9FIRM Putative uncharacterized protein OS=Eubac... 34 7.7 tr|A5ZSY1|A5ZSY1_9FIRM Putative uncharacterized protein OS=Rumin... 34 7.7 tr|A3Y385|A3Y385_9VIBR GGDEF family protein OS=Vibrio sp. MED222... 34 7.7 tr|A3UW02|A3UW02_VIBSP GGDEF family protein OS=Vibrio splendidus... 34 7.7 tr|Q8LMV5|Q8LMV5_ORYSJ Putative proline-rich cell wall protein O... 34 7.7 tr|Q7G4M5|Q7G4M5_ORYSJ Protease inhibitor/seed storage/LTP famil... 34 7.7 tr|B8BG20|B8BG20_ORYSI Putative uncharacterized protein OS=Oryza... 34 7.7 tr|Q4QBL6|Q4QBL6_LEIMA Putative uncharacterized protein OS=Leish... 34 7.7 tr|Q233B5|Q233B5_TETTH Putative uncharacterized protein OS=Tetra... 34 7.7
>tr|Q8D796|Q8D796_VIBVU Predicted signal transduction protein OS=Vibrio vulnificus GN=VV2_0264 PE=4 SV=1 Length = 638
Score = 38.1 bits (87), Expect = 0.41 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = -2
Query: 556 HHCYYKDYVSEARRN---LIFYKAQACPPTHSQEGAETRARHSRTELGDSQLGTLQCLHA 386 HH + Y+ +A RN ++++ + CP TH GAE R S LGD L Sbjct: 373 HHNQIESYLLQAVRNDDLTLYFQPKVCPQTHKWIGAEALLRWSHPVLGDISNEAL----- 427
Query: 385 HIHQEENGGL 356 IH E GL Sbjct: 428 -IHMAEQNGL 436
>tr|Q7MEA0|Q7MEA0_VIBVY GGDEF family protein OS=Vibrio vulnificus (strain YJ016) GN=VVA0770 PE=4 SV=1 Length = 660
Score = 38.1 bits (87), Expect = 0.41 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = -2
Query: 556 HHCYYKDYVSEARRN---LIFYKAQACPPTHSQEGAETRARHSRTELGDSQLGTLQCLHA 386 HH + Y+ +A RN ++++ + CP TH GAE R S LGD L Sbjct: 395 HHNQIESYLLQAVRNDDLTLYFQPKVCPQTHKWIGAEALLRWSHPVLGDISNEAL----- 449
Query: 385 HIHQEENGGL 356 IH E GL Sbjct: 450 -IHMAEQNGL 458
>tr|Q7D226|Q7D226_AGRT5 Biopolymer transport protein OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=exbB PE=3 SV=1 Length = 340
Score = 36.2 bits (82), Expect = 1.6 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = -3
Query: 591 PFEQAMASIPPSIIATTRTMSARPGETLFSTKLKPA-LQPIVKKEQKPAPDTLEQSLETL 415 P E S P AT +A P T + +PA + + Q PAP +ET+ Sbjct: 29 PTETVQPSQAPVAPATPSAPTAEPSPTAQPSSPQPAQFEQPAQTNQTPAPSETSTPVETV 88
Query: 414 NLEPCSAFMRT 382 N EP SA RT Sbjct: 89 NAEPASAERRT 99
>tr|B3MJ56|B3MJ56_DROAN GF11051 OS=Drosophila ananassae GN=GF11051 PE=4 SV=1 Length = 1396
Score = 35.4 bits (80), Expect = 2.7 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 12/67 (17%) Frame = -2
Query: 541 KDYVSEARRNLIFY------------KAQACPPTHSQEGAETRARHSRTELGDSQLGTLQ 398 ++ V+ ARRNL + K + P EGA ++A H +T G + Q Sbjct: 869 RELVARARRNLSIFVRIPKEEKPPEVKVEPSPQDKQDEGAASKAAHKKTRRGKKRRAAQQ 928
Query: 397 CLHAHIH 377 LH H H Sbjct: 929 PLHPHPH 935
>tr|Q3HLQ4|Q3HLQ4_TRIMU Phospholipase A2 isoform TM-N49 (Fragment) OS=Trimeresurus mucrosquamatus PE=2 SV=1 Length = 138
Score = 35.0 bits (79), Expect = 3.5 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +2
Query: 17 VCVCGRARAMSIRDSVRFHAKLNKWYQKWACRSP 118 +C C +A AM RD+V+ + K N +Y K +C P Sbjct: 101 ICECDKAAAMCFRDNVKTYKKRNIFYPKSSCTEP 134
>tr|A8BE57|A8BE57_GIALA High cysteine membrane protein Group 2 OS=Giardia lamblia ATCC 50803 GN=GL50803_16721 PE=4 SV=1 Length = 622
Score = 35.0 bits (79), Expect = 3.5 Identities = 20/66 (30%), Positives = 27/66 (40%) Frame = +2
Query: 266 CKNCSTSESRRSECNKRGRFCVQIEQGRGKQAPIFFLVDVRMKALQGSKLRVSKLCSRVS 445 C CST+ + S C+ G+ C GR + V Q L +LCS VS Sbjct: 75 CLPCSTTVTHCSRCSADGKSCYSCADGR-----VLKTVSTGQSTTQECFLSQEQLCSAVS 129
Query: 446 GAGFCS 463 G C+ Sbjct: 130 NCGLCT 135
>tr|A7MM16|A7MM16_ENTS8 Putative uncharacterized protein OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ESA_00279 PE=4 SV=1 Length = 246
Score = 34.7 bits (78), Expect = 4.5 Identities = 19/36 (52%), Positives = 21/36 (58%) Frame = -2
Query: 445 RHSRTELGDSQLGTLQCLHAHIHQEENGGLFASALL 338 R R GD Q+GTL + I QEENGG A ALL Sbjct: 209 RSKRNRTGDVQIGTLDQVTEVITQEENGGQNAGALL 244
>tr|B8CB46|B8CB46_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_9367 PE=4 SV=1 Length = 1132
Score = 34.7 bits (78), Expect = 4.5 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Frame = -3
Query: 564 PPSIIATTRTMSARPGE-------TLFSTKLKPALQPIVKKEQKPAPDTLEQSLETLNLE 406 PP+I TT + +P T T LKP L P+ K KP+ E S +L+L Sbjct: 503 PPTISPTTLKPTMKPTPQPVTPPPTPLPTSLKPTLSPVTMKTSKPS--VTESSAPSLSLS 560
Query: 405 PCSA-------FMRTSTKKKMGACLPLPCSIW 331 P S+ +++ K+ C P S+W Sbjct: 561 PSSSKPTPLQTMPPSNSPTKLVICPPEYQSLW 592
>tr|B6IFV1|B6IFV1_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae GN=CBG27228 PE=4 SV=1 Length = 1131
Score = 34.7 bits (78), Expect = 4.5 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +3
Query: 231 EIEQLAVLRQVVAKIAALQSPGEVNAIKGGVFASKSSKAEANKPPFSSWWMCA*RH 398 EI++L +R+ + +Q P EVNAI KS K++ KPP S + C+ H Sbjct: 211 EIKRLLDIREDSKSVCRVQQPAEVNAINRKSSTDKSQKSQ--KPPPSPCFKCSGNH 264
>tr|B0G8T4|B0G8T4_9FIRM Putative uncharacterized protein OS=Dorea formicigenerans ATCC 27755 GN=DORFOR_02695 PE=4 SV=1 Length = 604
Score = 34.3 bits (77), Expect = 5.9 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Frame = -2
Query: 217 LISAARFLLRIQAQKNRKRKLQGSEGSYVRWGKWGAASPFLIPLVELGV---KADRVTYR 47 L+++A L+ KN K+ QG E RWG PF+ P+ E V + +R+T Sbjct: 75 LVASALKLVVYYRSKNAKKFRQGVEYGSARWGNRKDIEPFMDPVFENNVILTETERLTMN 134
Query: 46 HGARAPTHTHTE 11 +AP + + Sbjct: 135 SRPKAPKYARNK 146
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