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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954185
Clone id TST39A01NGRL0019_M10
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_M10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TGCGAATTGCCGGTCCGAATCTGCTGCTAGCACGGCAGCAGATGTCATGGAGGAAGCAGA
TCTTGAAAGTTCTTCGAATTGTGCTTAATATGTATCGTTCTTACTTGAATTTAAATCTGA
ATTGACCCTTTGCTGGAGGGTTCTACTGAATGATTCTTACCTCCGAGGCTGACTAGATTG
CAAGGCATATTCGCTGGATGGTGAGGTCTCTCTTGTTTTGGTGGGGCTTGTCACTGGTCC
CAGTCCTAACCAGATTATTTGTTGTGCGTGCTGGAAATTGGAGGCCTCTTAAGTGCTCTC
ATGACCACAAATCTCAATGGTTTTGCAGGAGAAGTAAAATGAGTATGCTCTTTGTACATG
TCCGAGCCATGCGAATTAGCACATACATGCTAACTTGCTTTGCTTTGTATACCAGTCTCG
CAAGCTTCCATT
■■Homology search results ■■ -
sp_hit_id O42970
Definition sp|O42970|YB95_SCHPO Uncharacterized serine-rich protein C1E8.05 OS=Schizosaccharomyces pombe
Align length 118
Score (bit) 30.4
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954185|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_M10, 5'
         (432 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O42970|YB95_SCHPO Uncharacterized serine-rich protein C1E8.05...    30   3.3  
sp|P34219|YBF4_YEAST Myb domain-containing protein YBL054W OS=Sa...    30   5.5  
sp|Q5R810|IRAK2_PONAB Interleukin-1 receptor-associated kinase-l...    30   5.5  
sp|O43187|IRAK2_HUMAN Interleukin-1 receptor-associated kinase-l...    30   5.5  
sp|P0C2S7|TX36A_PHONI Neurotoxin Pn3-6A OS=Phoneutria nigrivente...    29   7.1  
sp|P35688|LRG1_YEAST Rho-GTPase-activating protein LRG1 OS=Sacch...    29   9.3  
sp|Q83P77|IRAD_SHIFL Anti-adapter protein iraD OS=Shigella flexn...    29   9.3  
sp|Q0SXN1|IRAD_SHIF8 Anti-adapter protein iraD OS=Shigella flexn...    29   9.3  
sp|Q31T16|IRAD_SHIBS Anti-adapter protein iraD OS=Shigella boydi...    29   9.3  
sp|P39375|IRAD_ECOLI Anti-adapter protein iraD OS=Escherichia co...    29   9.3  
sp|Q8XBA4|IRAD_ECO57 Anti-adapter protein iraD OS=Escherichia co...    29   9.3  
sp|A7ZVM4|IRAD_ECO24 Anti-adapter protein iraD OS=Escherichia co...    29   9.3  
sp|P39923|NPR2_YEAST Nitrogen permease regulator 2 OS=Saccharomy...    29   9.6  

>sp|O42970|YB95_SCHPO Uncharacterized serine-rich protein C1E8.05
           OS=Schizosaccharomyces pombe GN=SPBC1E8.05 PE=2 SV=1
          Length = 317

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
 Frame = -1

Query: 345 YSFYFSCKTIEICGHEST*EASNFQHAQQIIWLGLGPVTSPTKTRET--------SPSSE 190
           YS YF+ +    C    T   S+  ++  I    + P    T+T  +        +PSS 
Sbjct: 102 YSQYFTLQACSTC----TISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSS 157

Query: 189 YALQSSQPRR*ESFSRTLQQRVNSDLNSSKNDTY*AQFEELSRSASSMTSAAVLAADS 16
            +  SS P    S S +  +  +S  +SSK+ +  +   + S S+SS + ++   + S
Sbjct: 158 SSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSS 215


>sp|P34219|YBF4_YEAST Myb domain-containing protein YBL054W
           OS=Saccharomyces cerevisiae GN=YBL054W PE=1 SV=1
          Length = 525

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 404 SKAS*HVCANSHGSDMYKEHTHFTSPAKPLRFVVMRALKRPPISSTHNK 258
           S +S HV ANSHG  +  +H H  +           A    PISST  K
Sbjct: 10  SVSSGHVSANSHGFSILSKHPHPNNLVHSHSLSHTNAKSHLPISSTSTK 58


>sp|Q5R810|IRAK2_PONAB Interleukin-1 receptor-associated kinase-like
           2 OS=Pongo abelii GN=IRAK2 PE=2 SV=1
          Length = 625

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 10/40 (25%)
 Frame = +3

Query: 198 MVRSLLFWWGL------SLVPVLTRLFVVRAG----NWRP 287
           + R LL+WWG+       LV +L RL + RA     NW+P
Sbjct: 56  ITRELLWWWGMRQATVRQLVDLLCRLELYRAAQIILNWKP 95


>sp|O43187|IRAK2_HUMAN Interleukin-1 receptor-associated kinase-like
           2 OS=Homo sapiens GN=IRAK2 PE=1 SV=2
          Length = 625

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 10/40 (25%)
 Frame = +3

Query: 198 MVRSLLFWWGL------SLVPVLTRLFVVRAG----NWRP 287
           + R LL+WWG+       LV +L RL + RA     NW+P
Sbjct: 56  ITRELLWWWGMRQATVQQLVDLLCRLELYRAAQIILNWKP 95


>sp|P0C2S7|TX36A_PHONI Neurotoxin Pn3-6A OS=Phoneutria nigriventer
           PE=2 SV=1
          Length = 93

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 273 GNWRPLKCSHDHKSQWFCRRSK 338
           G W P+ CS  H +Q+FC   K
Sbjct: 66  GKWHPVGCSCAHANQYFCDHKK 87


>sp|P35688|LRG1_YEAST Rho-GTPase-activating protein LRG1
           OS=Saccharomyces cerevisiae GN=LRG1 PE=1 SV=2
          Length = 1017

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -2

Query: 410 IQSKAS*HVCANSHGSDMYKEHTHFTSPAKPLRFVVMRALKRPPISSTHNK 258
           ++SKAS  V  NS  S M KEHT+     + L  +     +R  +  THNK
Sbjct: 510 LKSKASNKVGRNSLQSTMLKEHTYI----RTLNDIKRLRSRRESVRVTHNK 556


>sp|Q83P77|IRAD_SHIFL Anti-adapter protein iraD OS=Shigella flexneri
           GN=iraD PE=3 SV=5
          Length = 130

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 246 LTRLFVVRAGNWRPLKCSHDHKSQWFCRRSKMSMLF--VHVRAMRISTYMLTCFALYTSL 419
           L  L V     W+    S  H   W+CR+ + ++LF    + A++++     C  L  SL
Sbjct: 40  LPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISL 99


>sp|Q0SXN1|IRAD_SHIF8 Anti-adapter protein iraD OS=Shigella flexneri
           serotype 5b (strain 8401) GN=iraD PE=3 SV=2
          Length = 130

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 246 LTRLFVVRAGNWRPLKCSHDHKSQWFCRRSKMSMLF--VHVRAMRISTYMLTCFALYTSL 419
           L  L V     W+    S  H   W+CR+ + ++LF    + A++++     C  L  SL
Sbjct: 40  LPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISL 99


>sp|Q31T16|IRAD_SHIBS Anti-adapter protein iraD OS=Shigella boydii
           serotype 4 (strain Sb227) GN=iraD PE=3 SV=2
          Length = 130

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 246 LTRLFVVRAGNWRPLKCSHDHKSQWFCRRSKMSMLF--VHVRAMRISTYMLTCFALYTSL 419
           L  L V     W+    S  H   W+CR+ + ++LF    + A++++     C  L  SL
Sbjct: 40  LPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISL 99


>sp|P39375|IRAD_ECOLI Anti-adapter protein iraD OS=Escherichia coli
           (strain K12) GN=iraD PE=1 SV=2
          Length = 130

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 246 LTRLFVVRAGNWRPLKCSHDHKSQWFCRRSKMSMLF--VHVRAMRISTYMLTCFALYTSL 419
           L  L V     W+    S  H   W+CR+ + ++LF    + A++++     C  L  SL
Sbjct: 40  LPSLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISL 99
tr_hit_id B6K4G1
Definition tr|B6K4G1|B6K4G1_SCHJP Putative uncharacterized protein OS=Schizosaccharomyces japonicus yFS275
Align length 122
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954185|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_M10, 5'
         (432 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6K4G1|B6K4G1_SCHJP Putative uncharacterized protein OS=Schiz...    39   0.13 
tr|A6S9B5|A6S9B5_BOTFB Putative uncharacterized protein OS=Botry...    36   0.84 
tr|Q7UJH1|Q7UJH1_RHOBA Putative uncharacterized protein OS=Rhodo...    36   0.84 
tr|B6LG72|B6LG72_BRAFL Putative uncharacterized protein OS=Branc...    35   1.4  
tr|B6LG48|B6LG48_BRAFL Putative uncharacterized protein OS=Branc...    35   1.4  
tr|A5DUG6|A5DUG6_LODEL Putative uncharacterized protein OS=Lodde...    35   1.9  
tr|Q6DRC5|Q6DRC5_DANRE D13S106E-like (Chromosome 13 open reading...    34   3.2  
tr|A8WFQ9|A8WFQ9_DANRE Chromosome 13 open reading frame 22-like ...    34   3.2  
tr|B6PRG1|B6PRG1_BRAFL Putative uncharacterized protein OS=Branc...    34   4.2  
tr|Q1GI90|Q1GI90_SILST Putative uncharacterized protein OS=Silic...    33   9.3  

>tr|B6K4G1|B6K4G1_SCHJP Putative uncharacterized protein
           OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_03521
           PE=4 SV=1
          Length = 282

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 39/122 (31%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
 Frame = -1

Query: 357 VQRAYSFYFSCKTIEICGHEST------*EASNFQHAQQIIWLGLGPVTSPTKTRETS-P 199
           V+ +YS YF+ +    C   ST        AS    A  +I       TS T T   S  
Sbjct: 98  VESSYSKYFTLQLCSTCSSSSTALSYSGDAASTVSVAASVIGTRSESSTSSTITSSVSAS 157

Query: 198 SSEYALQSSQPRR*ESFSRTLQQRVNSDLNSSKNDTY*AQFEELSRSASSMTSAAVLAAD 19
           SSE A  +S     +S S +      S+ + S + T  A     S S S  TSAAV AA 
Sbjct: 158 SSESASSASATSSSDSESSSAASSSESESSDSASSTIAASGNSTSSSRSHTTSAAVAAAS 217

Query: 18  SD 13
           S+
Sbjct: 218 SN 219


>tr|A6S9B5|A6S9B5_BOTFB Putative uncharacterized protein
            OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_09295
            PE=4 SV=1
          Length = 1991

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -1

Query: 225  PTKTRETSPSSEYALQSSQPRR*ESFSRTLQQRVNSDLNSSKND 94
            PT T  T+PS   A+Q+  P++ ++  + LQ RV   +++SK D
Sbjct: 1185 PTSTSNTNPSQPRAVQAQSPQKSKNVPKKLQTRVGQKVSASKKD 1228


>tr|Q7UJH1|Q7UJH1_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB11904 PE=4 SV=1
          Length = 302

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
 Frame = +3

Query: 204 RSLLFW--WGLSLV----------PVLTRLFVVRAGNWRPLKCSHDHKSQWFCRRSKMSM 347
           R  + W  WGL+L+          P+L+R F VR  +W PL            R+ ++S 
Sbjct: 63  RDTIVWTNWGLALLLFMATTAYVFPILSRAFGVRVKHWFPLLTR---------RKLRLSD 113

Query: 348 LFVHVRAMRISTYMLTCFALYTSLA 422
           L    RA+R    +L  F L TSLA
Sbjct: 114 LATERRALRGCLIVLAAFPLQTSLA 138


>tr|B6LG72|B6LG72_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_70220 PE=4 SV=1
          Length = 669

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = -1

Query: 249 LGLGPVTSPTKTRETSPSSEYALQSSQPRR*ESFSRTLQQRVNSDLNSSKNDTY*AQFEE 70
           LG  P      +  TSPSS     ++     ES +R+ +  V+ + NS +N TY  Q E+
Sbjct: 410 LGASPSVCNDISDTTSPSSPITDHTTGTNGGESHNRSGETTVDKEDNSLQNSTYTEQLED 469

Query: 69  LSRSASSMTSAAVLAADS 16
            SR A  M       +DS
Sbjct: 470 RSRIADDMGGEDSAPSDS 487


>tr|B6LG48|B6LG48_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_70196 PE=4 SV=1
          Length = 680

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = -1

Query: 249 LGLGPVTSPTKTRETSPSSEYALQSSQPRR*ESFSRTLQQRVNSDLNSSKNDTY*AQFEE 70
           LG  P      +  TSPSS     ++     ES +R+ +  V+ + NS +N TY  Q E+
Sbjct: 421 LGASPSVCNDISDTTSPSSPVTDHTTGTNGGESHNRSGETTVDKEDNSLQNSTYTEQLED 480

Query: 69  LSRSASSMTSAAVLAADS 16
            SR A  M       +DS
Sbjct: 481 RSRIADDMGGEDSAPSDS 498


>tr|A5DUG6|A5DUG6_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_01002 PE=4 SV=1
          Length = 523

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -1

Query: 240 GPVTSPTKTRETSPSSEYALQSSQPRR*ESFSRTLQQRVNSDLNSSKNDTY*AQFEE 70
           G +TS  K+ +  P+    +Q+ + R  E F+ +     NS++NS+ N    A FEE
Sbjct: 396 GRITSEQKSNDRLPNKVSPIQNKRDRGREHFTNSSSNNSNSNINSNANTNLDAAFEE 452


>tr|Q6DRC5|Q6DRC5_DANRE D13S106E-like (Chromosome 13 open reading
           frame 22-like) OS=Danio rerio GN=c13orf22l PE=2 SV=1
          Length = 1014

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
 Frame = +2

Query: 11  RSESAASTAADVMEEADLESSSNCA*YVSFLLEFKSELTLCWR-----VLLNDSYLRG*L 175
           R E   S+  D MEE  LESSS      S L  +K+E  +CW      +L++   +RG  
Sbjct: 325 RKEDCVSSTQDEMEEEVLESSSELVPVHSELF-WKNEENMCWLDAMLVMLVHCRTIRG-T 382

Query: 176 DCKAYSLDGEVSLVLVGLVTGPSPNQIICCACWKLE 283
            C+   L  +       L T P  + ++   CW+ +
Sbjct: 383 PCRGIKLSDK-------LATVPCNDSVVWKLCWRYD 411


>tr|A8WFQ9|A8WFQ9_DANRE Chromosome 13 open reading frame 22-like
           OS=Danio rerio GN=c13orf22l PE=2 SV=1
          Length = 1014

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
 Frame = +2

Query: 11  RSESAASTAADVMEEADLESSSNCA*YVSFLLEFKSELTLCWR-----VLLNDSYLRG*L 175
           R E   S+  D MEE  LESSS      S L  +K+E  +CW      +L++   +RG  
Sbjct: 325 RKEDCVSSTQDEMEEEVLESSSELVPVHSELF-WKNEENMCWLDAMLVMLVHCRTIRG-T 382

Query: 176 DCKAYSLDGEVSLVLVGLVTGPSPNQIICCACWKLE 283
            C+   L  +       L T P  + ++   CW+ +
Sbjct: 383 PCRGVKLSDK-------LATVPCNDSVVWKLCWRYD 411


>tr|B6PRG1|B6PRG1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_110076 PE=4 SV=1
          Length = 223

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 231 TSPTKTRETSPSSEYALQSSQPRR*ESFSRTLQQRVNSDLNSSKND 94
           TSP KTRE SP+S  + + + P++ + F +T  Q++   +     D
Sbjct: 103 TSPKKTREKSPTSSASPKKASPQKSKYFDKTEDQKMKKKIKLESQD 148


>tr|Q1GI90|Q1GI90_SILST Putative uncharacterized protein
           OS=Silicibacter sp. (strain TM1040) GN=TM1040_0893 PE=4
           SV=1
          Length = 482

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 29/118 (24%), Positives = 50/118 (42%)
 Frame = -1

Query: 369 WLGHVQRAYSFYFSCKTIEICGHEST*EASNFQHAQQIIWLGLGPVTSPTKTRETSPSSE 190
           W  H +RA+  +   +T+E    E     ++F+ A  + +LG GP T+P +    S  + 
Sbjct: 340 WQDH-RRAFGHFLIGRTLETSAPEQA--EAHFRTA--LNYLGTGPDTAPHRALNQSRLAA 394

Query: 189 YALQSSQPRR*ESFSRTLQQRVNSDLNSSKNDTY*AQFEELSRSASSMTSAAVLAADS 16
           YAL++    R E    T      +  N++   T       ++ S      A  L A+S
Sbjct: 395 YALRAGNIARAEQLIDTAYGAAQTSQNAALMATLLTLKAHIAESRGDRRRATALRAES 452