| DK954106 |
| Clone id |
TST39A01NGRL0019_I22 |
| Library |
TST39 |
| Length |
555 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_I22. 5' end sequence. |
| Accession |
DK954106 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
- |
| Sequence |
CGAACTTTCAGCGAGTTCAATCTCCATCTGCATTATGGCTGCTGCTGTTGATTACGAGTC
CATCTACCAGAATGTGAATGAGATAGCGAGGGTGGTGGATACTGGCAAGATCACTTGCTC
CGAGGTGATGACGTGCCACAAAATGTTTGTTCGGCTAGACACATTATCTGTGGAGGAGTT
AGTGGGCTCTAGCAACGTCAAGCAACTCATCGTGTTTGCGGATGTGGTGGAAATCCAGAA
GAACACCTTTACTTTGCCAGGGTCCACCCAAATTCTCATAGCATGTCGCATCTTGGATGT
CAAAACGAACAACGAGATCGACCTTACTCTGGATTGGCAAGTAGTGAACAATACCAATCA
ACAGAGCATTCCTCGATGTGCGATCTACGCAGAAAATATTGTCTCCTCCTCGAGTGGTAA
TAGTGGCACCATCCTTCTCAAGGTGAAATATCAGAGAACAAGCTCTTCCACTACAGTATA
TTTTGGGCGACAGTTCTCCTATACTACTGGTACTGGTGTAGCTGCGCCTACAGACATTGG
ATTTAAGCATTGCTG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9IA21 |
| Definition |
sp|Q9IA21|HXA3_HETFR Homeobox protein Hox-A3 OS=Heterodontus francisci |
| Align length |
126 |
| Score (bit) |
33.9 |
| E-value |
0.55 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954106|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_I22, 5'
(555 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9IA21|HXA3_HETFR Homeobox protein Hox-A3 OS=Heterodontus fra... 34 0.55
sp|P47651|PSTA_MYCGE Phosphate transport system permease protein... 32 2.1
sp|P52172|SRP_DROME Box A-binding factor OS=Drosophila melanogas... 31 4.6
sp|Q8PTU3|RNP3_METMA Ribonuclease P protein component 3 OS=Metha... 31 4.6
sp|Q558Z9|EXOC7_DICDI Exocyst complex component 7 OS=Dictyosteli... 30 6.0
sp|O42368|HXB3A_DANRE Homeobox protein Hox-B3a OS=Danio rerio GN... 30 6.1
sp|Q2S906|RPOC_HAHCH DNA-directed RNA polymerase subunit beta' O... 30 7.9
sp|Q8TPX2|RNP3_METAC Ribonuclease P protein component 3 OS=Metha... 30 7.9
sp|A5E2Y4|PAN3_LODEL PAB-dependent poly(A)-specific ribonuclease... 30 8.0
sp|Q8INR6|DOT1L_DROME Histone-lysine N-methyltransferase, H3 lys... 30 8.0
>sp|Q9IA21|HXA3_HETFR Homeobox protein Hox-A3 OS=Heterodontus
francisci GN=HOXA3 PE=3 SV=1
Length = 410
Score = 33.9 bits (76), Expect = 0.55
Identities = 36/126 (28%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Frame = +1
Query: 136 PQNVCSARHIICGGVSGL*QRQATHRVCGCGGNPEEHLYFARVH-------------PNS 276
P N C G + + TH + G GG HL + V+ P+
Sbjct: 292 PLNSCPPPQKRYAGTAAVTPEYDTHPLQGNGGYGTPHLQGSPVYVGGNFVESMPSSGPSL 351
Query: 277 HSMSHLGCQNEQRDRPYSGLASSEQYQSTEHSSMCDLRRKYCLLLEW**WHHPSQGEISE 456
S++HLG + Y+G S H CD Y L HHPSQG I E
Sbjct: 352 FSLTHLG-HPPSGNMDYNGAGPMT---SNHHHGPCDPHPTYTDLSS----HHPSQGRIQE 403
Query: 457 -NKLFH 471
KL H
Sbjct: 404 APKLTH 409
>sp|P47651|PSTA_MYCGE Phosphate transport system permease protein
pstA homolog OS=Mycoplasma genitalium GN=pstA PE=3 SV=1
Length = 654
Score = 32.0 bits (71), Expect = 2.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 502 IGELSPKIYCSGRACSLIFHLEKDGATITTRGGDNIFCVDRTSRNALL 359
I E +P SG + S +FHL G T+TTR +F ++ + + +L
Sbjct: 559 IAETAPFFITSGLSSSNLFHLSLPGQTLTTRIYGQLFSINSNAISVML 606
>sp|P52172|SRP_DROME Box A-binding factor OS=Drosophila melanogaster
GN=srp PE=1 SV=2
Length = 1264
Score = 30.8 bits (68), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 170 QIMCLAEQTFCGTSSPRSK*SCQYPPPSLSHSHSGRWTRNQQQQ 39
Q + +A+Q SSP S S P ++SH H + QQQQ
Sbjct: 928 QQLLMADQHSSAASSPHSMGSTSLSPSAMSHQHQTHPHQQQQQQ 971
>sp|Q8PTU3|RNP3_METMA Ribonuclease P protein component 3
OS=Methanosarcina mazei GN=rnp3 PE=3 SV=1
Length = 239
Score = 30.8 bits (68), Expect = 4.6
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 80 EIARVVDTGKITCSEVMTCHKMFVRLDTLSVEELVGSSNVKQLIVFADVVE--IQKN 244
E+AR D + CS+ M+C+ + ++TL+ E+ G + L + V + I+KN
Sbjct: 163 ELARKYDVPLVLCSDAMSCYDLRSPMETLAFAEVCGLEEDEALDALSTVPKKIIKKN 219
>sp|Q558Z9|EXOC7_DICDI Exocyst complex component 7 OS=Dictyostelium
discoideum GN=exoc7 PE=3 SV=1
Length = 840
Score = 30.4 bits (67), Expect = 6.0
Identities = 27/90 (30%), Positives = 44/90 (48%)
Frame = +2
Query: 161 TLSVEELVGSSNVKQLIVFADVVEIQKNTFTLPGSTQILIACRILDVKTNNEIDLTLDWQ 340
+L E+ + SSN K++I A V EI N I R+++ K + ++L L Q
Sbjct: 552 SLDEEKEISSSNRKEIISDATVDEISSN--------MINYFKRLIEYK--HSVELLLKGQ 601
Query: 341 VVNNTNQQSIPRCAIYAENIVSSSSGNSGT 430
NN+N S + + + SSSS +S +
Sbjct: 602 DNNNSNSNSNAPSSTSSNSKSSSSSSSSSS 631
>sp|O42368|HXB3A_DANRE Homeobox protein Hox-B3a OS=Danio rerio
GN=hoxb3a PE=2 SV=3
Length = 417
Score = 30.4 bits (67), Expect = 6.1
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 268 PNSHSMSHLGCQNEQRDRPYSGLASSEQYQSTEHSSMCDLRRKYCLLLEW**WHHPSQGE 447
P+ + ++HL ++ Y+G + Q + +H CD Y L HHPSQG
Sbjct: 356 PSMYGLNHLP-HHQSASMDYNG---ATQMSANQHHGPCDPHPTYTDLSA----HHPSQGR 407
Query: 448 ISE-NKLFH 471
I E KL H
Sbjct: 408 IQEAPKLTH 416
>sp|Q2S906|RPOC_HAHCH DNA-directed RNA polymerase subunit beta'
OS=Hahella chejuensis (strain KCTC 2396) GN=rpoC PE=3
SV=1
Length = 1396
Score = 30.0 bits (66), Expect = 7.9
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Frame = +2
Query: 209 IVFADVVEIQKNTFTLPGSTQILIACRILDVKTNNEIDLTLDWQVVNNTNQQSIPRCAIY 388
+VF+D+ E+Q+ Q + RI DV + + + T+ V++ T +++ I+
Sbjct: 525 MVFSDIKEVQRAYGAKKVDLQAKVKVRIRDVVIDEDRNKTVTVSVLDTTVGRAL-LFDIF 583
Query: 389 AENIVSSSSGNSGT-----ILLKVKYQRTSSSTTVYFGRQFSYT 505
E + S + T L+ Y+R TV F Q YT
Sbjct: 584 PEGLAFSLVNQNMTKKAISRLINACYRRVGLKETVIFADQIMYT 627
>sp|Q8TPX2|RNP3_METAC Ribonuclease P protein component 3
OS=Methanosarcina acetivorans GN=rnp3 PE=3 SV=1
Length = 239
Score = 30.0 bits (66), Expect = 7.9
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 80 EIARVVDTGKITCSEVMTCHKMFVRLDTLSVEELVGSSNVKQLIVFADVVE--IQKNTFT 253
E+AR D + CS+ M+C + ++ L++ E+ G + L + V E I KN
Sbjct: 163 ELARKYDVSLVLCSDAMSCFDLRSPMEMLALAEVCGLEEDEALEAISTVPEKIIAKNR-- 220
Query: 254 LPGSTQILIACRILD 298
PG I +L+
Sbjct: 221 -PGPGYIKKGIEVLE 234
>sp|A5E2Y4|PAN3_LODEL PAB-dependent poly(A)-specific ribonuclease
subunit PAN3 OS=Lodderomyces elongisporus GN=PAN3 PE=3
SV=1
Length = 794
Score = 30.0 bits (66), Expect = 8.0
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -1
Query: 315 SLFVLTSKMRHAMRIWVDPGKVKVFFWISTTSANTMSCLTLLEPTNSSTDNVSSRTNILW 136
SL + + +IW PGK V F ++ + L +EP N D R W
Sbjct: 388 SLVPIDKSYDSSSKIW--PGKSTVLFKCNSNFDGNLYALRKIEPCNEIVDETPFRNIRKW 445
Query: 135 HVITSEQVILPVS---TTLAISFTF 70
+ + I+ + TT+A S TF
Sbjct: 446 KSLHNNANIVALRDAFTTMAFSNTF 470
>sp|Q8INR6|DOT1L_DROME Histone-lysine N-methyltransferase, H3
lysine-79 specific OS=Drosophila melanogaster GN=gpp
PE=1 SV=2
Length = 1848
Score = 30.0 bits (66), Expect = 8.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 265 HPNSHSMSHLGCQNEQRDRPYSGLASSEQYQSTEHSS 375
H N HS +H N QRDR S A++ H S
Sbjct: 367 HNNHHSNNHANSNNHQRDREQSNGATATAAHQQRHQS 403
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B2KWY8 |
| Definition |
tr|B2KWY8|B2KWY8_NPVSF Putative uncharacterized protein OS=Spodoptera frugiperda nuclear polyhedrosis virus |
| Align length |
74 |
| Score (bit) |
36.2 |
| E-value |
1.2 |
| Report |
|