DK954028 |
Clone id |
TST39A01NGRL0019_F16 |
Library |
TST39 |
Length |
533 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_F16. 5' end sequence. |
Accession |
DK954028 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2186Contig1 |
Sequence |
GGTTGTAACCGAATGGTCATTGTGAACAGGACCGAGCAGAGGGTTCTTGACTTGCAGGCA GAGTTTCCAGAAGCAGACCTGGTTTTCCATCCTCTGTCGGATATGATGCAATGCACAGGT GAAGCTGATGTTGTATTCACAAGCACTGCCTCTGAAAGCCCTCTTTTCTTCAAGGAGACA GTCGAGACCCTTCCACTTGCAGGAGCTGGTGTTGGTGGCGTGAGGCACTTTATTGACATC TCTGTTCCTCGGAATGTAGCAGCATGTGTTGGAGAGACACCTAACACCAGATTGTATAAT GTGGACGACCTGAAGGAGGTTGTAGCTGCAAACAAGGAGGAGCGCCGGCGCAAGGCGATG GAAGCACAAGTCATCATCGAGGAAGAGCTAAGGAGCTTTGAGGGCTGGAGGGACTCTTTG GAAACAGTCCCAACAATTAAGAAGCTACGAGCTTATGCAGAGAATATTCGAATGAGTGAG TTGGAGAAATGCCTAAGCAAGATGGGTGAAGATCTACCCAAGAAGAACAAAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P42804 |
Definition |
sp|P42804|HEM11_ARATH Glutamyl-tRNA reductase 1, chloroplastic OS=Arabidopsis thaliana |
Align length |
175 |
Score (bit) |
246.0 |
E-value |
4.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954028|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0019_F16, 5' (533 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P42804|HEM11_ARATH Glutamyl-tRNA reductase 1, chloroplastic O... 246 4e-65 sp|P93111|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic O... 241 1e-63 sp|P0C587|HEM1_ORYSJ Glutamyl-tRNA reductase, chloroplastic OS=O... 223 3e-58 sp|A2Z928|HEM1_ORYSI Glutamyl-tRNA reductase, chloroplastic OS=O... 223 3e-58 sp|Q42843|HEM11_HORVU Glutamyl-tRNA reductase 1, chloroplastic O... 217 2e-56 sp|O65796|HEM13_HORVU Glutamyl-tRNA reductase 3, chloroplastic O... 216 4e-56 sp|Q96563|HEM12_HORVU Glutamyl-tRNA reductase 2 (Fragment) OS=Ho... 216 7e-56 sp|P49294|HEM12_ARATH Glutamyl-tRNA reductase 2, chloroplastic O... 209 7e-54 sp|P49295|HEM12_CUCSA Glutamyl-tRNA reductase 2, chloroplastic O... 205 1e-52 sp|Q117I4|HEM1_TRIEI Glutamyl-tRNA reductase OS=Trichodesmium er... 151 2e-36 sp|Q7V809|HEM1_PROMM Glutamyl-tRNA reductase OS=Prochlorococcus ... 145 2e-34 sp|A2CAB8|HEM1_PROM3 Glutamyl-tRNA reductase OS=Prochlorococcus ... 144 2e-34 sp|B0BZF9|HEM1_ACAM1 Glutamyl-tRNA reductase OS=Acaryochloris ma... 144 3e-34 sp|P28463|HEM1_SYNY3 Glutamyl-tRNA reductase OS=Synechocystis sp... 142 8e-34 sp|Q7U769|HEM1_SYNPX Glutamyl-tRNA reductase OS=Synechococcus sp... 133 6e-31 sp|Q7VCA1|HEM1_PROMA Glutamyl-tRNA reductase OS=Prochlorococcus ... 133 6e-31 sp|Q8DI53|HEM1_THEEB Glutamyl-tRNA reductase OS=Thermosynechococ... 132 1e-30 sp|Q3AK73|HEM1_SYNSC Glutamyl-tRNA reductase OS=Synechococcus sp... 129 7e-30 sp|Q3M6T2|HEM1_ANAVT Glutamyl-tRNA reductase OS=Anabaena variabi... 129 7e-30 sp|O08393|HEM1_ANASP Glutamyl-tRNA reductase OS=Anabaena sp. (st... 129 9e-30 sp|A2BQQ3|HEM1_PROMS Glutamyl-tRNA reductase OS=Prochlorococcus ... 128 2e-29 sp|A5GLB0|HEM1_SYNPW Glutamyl-tRNA reductase OS=Synechococcus sp... 127 3e-29 sp|Q31BA9|HEM1_PROM9 Glutamyl-tRNA reductase OS=Prochlorococcus ... 126 7e-29 sp|A3PCH6|HEM1_PROM0 Glutamyl-tRNA reductase OS=Prochlorococcus ... 126 7e-29 sp|A8G4E6|HEM1_PROM2 Glutamyl-tRNA reductase OS=Prochlorococcus ... 125 1e-28 sp|Q0I9I2|HEM1_SYNS3 Glutamyl-tRNA reductase OS=Synechococcus sp... 124 3e-28 sp|Q5N3B4|HEM1_SYNP6 Glutamyl-tRNA reductase OS=Synechococcus sp... 124 4e-28 sp|Q31QY3|HEM1_SYNE7 Glutamyl-tRNA reductase OS=Synechococcus el... 124 4e-28 sp|A2C1K4|HEM1_PROM1 Glutamyl-tRNA reductase OS=Prochlorococcus ... 124 4e-28 sp|Q46LG2|HEM1_PROMT Glutamyl-tRNA reductase OS=Prochlorococcus ... 123 5e-28
>sp|P42804|HEM11_ARATH Glutamyl-tRNA reductase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMA1 PE=2 SV=2 Length = 543
Score = 246 bits (629), Expect = 4e-65 Identities = 118/175 (67%), Positives = 142/175 (81%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 GC ++V+VNR+E+RV ++ E P ++++ PL +M+ C EADVVFTSTASE+PLF KE Sbjct: 301 GCTKVVVVNRSEERVSAIREEMPGIEIIYRPLDEMLACASEADVVFTSTASETPLFLKEH 360
Query: 181 VETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKAM 360 VE LP A VGG+RHF+DISVPRNV +CVGE R+YNVDDLKEVVAANKE+R RKAM Sbjct: 361 VENLPQASPEVGGLRHFVDISVPRNVGSCVGEVETARVYNVDDLKEVVAANKEDRMRKAM 420
Query: 361 EAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGEDLPKK 525 EAQ II EE FE WRDSLETVPTIKKLRAYAE IR++ELEKC+SKMG+D+ KK Sbjct: 421 EAQTIITEESTQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCMSKMGDDINKK 475
>sp|P93111|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1 Length = 552
Score = 241 bits (616), Expect = 1e-63 Identities = 117/177 (66%), Positives = 143/177 (80%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 GC +MV+VNR+E+RV ++ E + ++++ PL++M+ CT EADV+FTSTASES LF KE Sbjct: 308 GCTKMVVVNRSEERVTAIREEMKDVEIIYKPLTEMLSCTAEADVIFTSTASESLLFTKEQ 367
Query: 181 VETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKAM 360 V+ LP G VGG+R FIDISVPRNV AC+ + R+YNVDDLKEVVAANKE+R RKAM Sbjct: 368 VKDLPPVGHDVGGLRLFIDISVPRNVGACINNLEDVRVYNVDDLKEVVAANKEDRLRKAM 427
Query: 361 EAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGEDLPKKNK 531 EAQ II EE + FE WRDSLETVPTIKKLRAYAE IR +ELEKCLSKMG+D+PKK + Sbjct: 428 EAQSIITEESKQFEAWRDSLETVPTIKKLRAYAERIRTAELEKCLSKMGDDIPKKTR 484
>sp|P0C587|HEM1_ORYSJ Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os10g0502400 PE=2 SV=1 Length = 537
Score = 223 bits (569), Expect = 3e-58 Identities = 112/176 (63%), Positives = 138/176 (78%), Gaps = 1/176 (0%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 GC ++V+VNR+ +RV ++ E + ++V+ PL++M + EADVVFTSTASE+PLF KE Sbjct: 292 GCKKVVVVNRSVERVDAIREEMKDIEIVYRPLTEMYEAAAEADVVFTSTASETPLFTKEH 351
Query: 181 VETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKAM 360 E LP +GGVR F+DISVPRNV+ACV E + R+YNVDDLKEVV ANKE+R RKAM Sbjct: 352 AEALPAISDAMGGVRLFVDISVPRNVSACVSEVGHARVYNVDDLKEVVEANKEDRLRKAM 411
Query: 361 EAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGED-LPKK 525 EAQ II +EL+ FE WRDSLETVPTIKKLR+YA+ IR SELEKCL K+GED L KK Sbjct: 412 EAQTIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDALTKK 467
>sp|A2Z928|HEM1_ORYSI Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_033071 PE=2 SV=2 Length = 537
Score = 223 bits (569), Expect = 3e-58 Identities = 112/176 (63%), Positives = 138/176 (78%), Gaps = 1/176 (0%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 GC ++V+VNR+ +RV ++ E + ++V+ PL++M + EADVVFTSTASE+PLF KE Sbjct: 292 GCKKVVVVNRSVERVDAIREEMKDIEIVYRPLTEMYEAAAEADVVFTSTASETPLFTKEH 351
Query: 181 VETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKAM 360 E LP +GGVR F+DISVPRNV+ACV E + R+YNVDDLKEVV ANKE+R RKAM Sbjct: 352 AEALPAISDAMGGVRLFVDISVPRNVSACVSEVGHARVYNVDDLKEVVEANKEDRLRKAM 411
Query: 361 EAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGED-LPKK 525 EAQ II +EL+ FE WRDSLETVPTIKKLR+YA+ IR SELEKCL K+GED L KK Sbjct: 412 EAQTIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDSLTKK 467
>sp|Q42843|HEM11_HORVU Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeum vulgare GN=HEMA1 PE=1 SV=1 Length = 527
Score = 217 bits (553), Expect = 2e-56 Identities = 107/171 (62%), Positives = 133/171 (77%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 GC ++V+VNR+ +RV ++ E + ++V+ PL++M + +ADVVFTSTASES LF KE Sbjct: 282 GCKKVVVVNRSVERVDAIREEMKDIEIVYRPLTEMYEAAADADVVFTSTASESLLFTKEH 341
Query: 181 VETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKAM 360 E LP +GGVR F+DISVPRNV AC+ E + R+YNVDDLKEVV ANKE+R RKAM Sbjct: 342 AEVLPPISLAMGGVRLFVDISVPRNVGACLSEVEHARVYNVDDLKEVVEANKEDRVRKAM 401
Query: 361 EAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGED 513 EAQ II +EL+ FE WRDSLETVPTIKKLR+YA+ IR SELEKCL K+GED Sbjct: 402 EAQTIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGED 452
>sp|O65796|HEM13_HORVU Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeum vulgare GN=HEMA3 PE=2 SV=1 Length = 535
Score = 216 bits (551), Expect = 4e-56 Identities = 108/176 (61%), Positives = 136/176 (77%), Gaps = 1/176 (0%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 GC ++VIVNR+ +RV ++ E ++V+ L++M + +ADVVFTST+SESPLF KE Sbjct: 288 GCKKVVIVNRSVERVDAIREEMQGIEIVYRSLTEMYEAAADADVVFTSTSSESPLFTKEH 347
Query: 181 VETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKAM 360 E LP +GGVR F+DISVPRNV+ACV + + R+YNVDDLKEVV ANKE+R RKAM Sbjct: 348 AEALPPVSGALGGVRLFVDISVPRNVSACVSDVGHARVYNVDDLKEVVEANKEDRLRKAM 407
Query: 361 EAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGED-LPKK 525 EAQ II EEL+ FE WRDS+ETVPTIKKLR+YA+ +R SEL+KCL K+GED L KK Sbjct: 408 EAQTIISEELKRFEAWRDSMETVPTIKKLRSYADRVRASELDKCLQKIGEDALTKK 463
>sp|Q96563|HEM12_HORVU Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vulgare GN=HEMA2 PE=2 SV=1 Length = 465
Score = 216 bits (549), Expect = 7e-56 Identities = 108/178 (60%), Positives = 137/178 (76%), Gaps = 1/178 (0%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 GC ++V+VNR+ +RV ++ E + ++V+ PL++M + +ADVVFTSTASES LF KE Sbjct: 220 GCKKVVVVNRSVERVDAIREEMKDIEIVYRPLTEMYEAAADADVVFTSTASESLLFTKEH 279
Query: 181 VETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKAM 360 E LP +GGVR F+DISVPRNV AC+ + + R+YNVDDLKEVV ANKE+R RKAM Sbjct: 280 AEALPPISLAMGGVRLFVDISVPRNVGACLSQVEHARVYNVDDLKEVVEANKEDRVRKAM 339
Query: 361 EAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGED-LPKKNK 531 EAQ II +EL+ FE WRDSLETVPTIKKLR+YA+ IR SEL+KCL K+GED L KK + Sbjct: 340 EAQAIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELDKCLQKIGEDNLNKKTR 397
>sp|P49294|HEM12_ARATH Glutamyl-tRNA reductase 2, chloroplastic OS=Arabidopsis thaliana GN=HEMA2 PE=2 SV=2 Length = 530
Score = 209 bits (532), Expect = 7e-54 Identities = 107/176 (60%), Positives = 132/176 (75%), Gaps = 1/176 (0%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEA-DLVFHPLSDMMQCTGEADVVFTSTASESPLFFKE 177 GC +MV+VNR+E++V ++ E P ++++ PL +M+ C EADVVFTSTASE+PLF KE Sbjct: 293 GCTKMVVVNRSEEKVAAVRNEMPPGVEIIYKPLDEMLSCAAEADVVFTSTASETPLFLKE 352
Query: 178 TVETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKA 357 VETLP V R F+DISVPRNV +CV E TR++NVDDLKEVVAANKE+R RKA Sbjct: 353 QVETLP----PVRDARLFVDISVPRNVGSCVAEIDGTRVFNVDDLKEVVAANKEDRVRKA 408
Query: 358 MEAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGEDLPKK 525 M+AQ II +E + FE WRDSLETVPTIKKLR Y E I +E+EK L KMG D+ KK Sbjct: 409 MDAQAIITDESKHFEAWRDSLETVPTIKKLRGYTERIIAAEIEKSLPKMGIDMNKK 464
>sp|P49295|HEM12_CUCSA Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumis sativus GN=HEMA2 PE=2 SV=1 Length = 542
Score = 205 bits (522), Expect = 1e-52 Identities = 105/177 (59%), Positives = 128/177 (72%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 GC +MV+VNRT+ V D E + ++++ PLS ++ C EADV+FT TAS++PLF KE Sbjct: 300 GCRKMVVVNRTQDSV-DAVEELKDVEIIYKPLSKILACASEADVIFTCTASKTPLFTKEH 358
Query: 181 VETLPLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRKAM 360 V LP AG G R F+DISVPRNV V + ++NVDDLKEVVAANKE+R +K Sbjct: 359 VAMLPPAGTETGR-RLFVDISVPRNVEQRVSDLETVSVFNVDDLKEVVAANKEDRLKKVQ 417
Query: 361 EAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGEDLPKKNK 531 EAQ II EE+ FE WRDSLETVPTIKK RAY E IR +EL+KCLSKMGED+PKK K Sbjct: 418 EAQSIIGEEINKFEAWRDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKK 474
>sp|Q117I4|HEM1_TRIEI Glutamyl-tRNA reductase OS=Trichodesmium erythraeum (strain IMS101) GN=hemA PE=3 SV=1 Length = 431
Score = 151 bits (382), Expect = 2e-36 Identities = 82/179 (45%), Positives = 117/179 (65%), Gaps = 2/179 (1%) Frame = +1
Query: 1 GCNRMVIVNRTEQRVLDLQAEFPEADLVFHPLSDMMQCTGEADVVFTSTASESPLFFKET 180 G N++ I+NR+ R DL F +A++ + + +M+Q GE+D+VFTSTA+ + K Sbjct: 205 GANKISIINRSVGRAQDLANSFKDANIKVYSMLEMVQVIGESDLVFTSTAATELILDKAK 264
Query: 181 VETL--PLAGAGVGGVRHFIDISVPRNVAACVGETPNTRLYNVDDLKEVVAANKEERRRK 354 +ET+ PL + +DISVPRN+ V E PN R +NVDDLK VVA N+E RR+ Sbjct: 265 LETILDPLKPLML------VDISVPRNIGNDVSELPNVRCFNVDDLKAVVAQNRESRRQM 318
Query: 355 AMEAQVIIEEELRSFEGWRDSLETVPTIKKLRAYAENIRMSELEKCLSKMGEDLPKKNK 531 AMEA+V++EEE+ +F+ W SLETVPTI LR E IR ELEK LS++G + +K++ Sbjct: 319 AMEAEVLLEEEVEAFDVWWKSLETVPTINSLRQKIETIREQELEKALSRLGSEFAEKHQ 377
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TL49 |
Definition |
tr|A9TL49|A9TL49_PHYPA Glutamyl-tRNA reductase OS=Physcomitrella patens subsp. patens |
Align length |
177 |
Score (bit) |
257.0 |
E-value |
3.0e-67 |
Report |
|