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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953938
Clone id TST39A01NGRL0019_B18
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_B18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCACGATAGCTCTCGAACTTTTATGATGTTCAAAGTAAAGCCATCTCCAGGCAATGGGAG
TAATGGCGTCGTCAAGGTTGATGCGTATTTTAAGGAGGCAGTTGATACAGATCCTGAAAC
CAATGCAGAAGATGCCTTTCAAGAGCTGCTCAAGGAGAGAGAGGAGGAAATTAATCAAGT
AGCAGAGAAGGTTATGCAGTATTTGAAAATTGCAGGCACATCGCTTGTGCAAGTGTGAAA
TGGTGAAGGGGCACATAGTAAGTGACAATGCCTTGCATGCATGATTGCAGAATTAATGTG
AACCTGGATACTCAGCTTATCTGGGCCCCTTTTAGAATTGCTGGAATATGAAGTGTAATT
CCAGGGGTCCTTCAGCTTGGAGACTACATCTTTTGCTCGGGGATTTTTACCCTGATGTAA
CATATTGCACCTTATTCAATATGTAGCTTTGATGCTGAAATTGTCTTCTATATGCTTTTT
CAGGCACCTTTGCTTGGATATGGGGCATGGGGTGTCGTCACCCTGTAGCAGTCTTTATTG
AGCTTTT
■■Homology search results ■■ -
sp_hit_id Q64127
Definition sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha OS=Mus musculus
Align length 22
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953938|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_B18, 5'
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha ...    32   2.6  
sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha ...    32   2.6  
sp|Q9Z1P8|ANGL4_MOUSE Angiopoietin-related protein 4 OS=Mus musc...    31   3.4  
sp|O31976|YOMI_BACSU SPBc2 prophage-derived uncharacterized tran...    30   5.9  
sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 ...    30   5.9  
sp|Q7RAV5|CDPK3_PLAYO Calcium-dependent protein kinase 3 OS=Plas...    30   5.9  

>sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha
           OS=Mus musculus GN=Trim24 PE=1 SV=1
          Length = 1051

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 507 CPISKQRCLKKHIEDNFSIKAT 442
           CP+  Q C ++HI DNF +K T
Sbjct: 127 CPVCSQECAERHIIDNFFVKDT 148


>sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha
           OS=Homo sapiens GN=TRIM24 PE=1 SV=3
          Length = 1050

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 507 CPISKQRCLKKHIEDNFSIKAT 442
           CP+  Q C ++HI DNF +K T
Sbjct: 127 CPVCSQECAERHIIDNFFVKDT 148


>sp|Q9Z1P8|ANGL4_MOUSE Angiopoietin-related protein 4 OS=Mus
           musculus GN=Angptl4 PE=2 SV=1
          Length = 410

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 50  GNGSNGVVKVDAYFKEAVDTDPETNAEDAFQEL---LKEREEEINQVAEKVMQ 199
           GN   G    DA FK++ D  PE    +  Q L   LK +  +I Q+ +KV Q
Sbjct: 77  GNACQGPKGKDAPFKDSEDRVPEGQTPETLQSLQTQLKAQNSKIQQLFQKVAQ 129


>sp|O31976|YOMI_BACSU SPBc2 prophage-derived uncharacterized
            transglycosylase yomI OS=Bacillus subtilis GN=yomI PE=3
            SV=1
          Length = 2285

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = +2

Query: 92   KEAVDTDPETNAEDAFQELLKEREEEINQVAEKVMQY 202
            ++ +D   +T+ E  FQ+ LKER++ I ++ +++ QY
Sbjct: 1972 QDLIDEIDKTDDEAKFQKELKERQDSIQKLTDQINQY 2008


>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2
            SV=1
          Length = 3298

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 47   PGNGSNGVVKVDAYFKEAVDTDPETNAEDAFQELLKEREEEIN 175
            P  G+NG V       E+   DP+T      + L +E +EEIN
Sbjct: 1676 PDVGANGQVTYGGVSSESFSLDPDTGVLTTLRALDREEQEEIN 1718


>sp|Q7RAV5|CDPK3_PLAYO Calcium-dependent protein kinase 3
           OS=Plasmodium yoelii yoelii GN=CDPK3 PE=3 SV=1
          Length = 538

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -2

Query: 483 LKKHIEDNFSIKATY*IRCNMLHQGKNPRAKDVVSKLKDPWNYTSYSSNSKRGPDKL 313
           +KK  + N SIK+ +    + +   KN   KDV  K KDP NY SY + + +  D L
Sbjct: 30  IKKKKDSNKSIKSQHKFEGSKI-SNKNNELKDV--KSKDPKNYESYLNKNTKHKDIL 83
tr_hit_id A3TZ18
Definition tr|A3TZ18|A3TZ18_9RHOB ATP-dependent metalloprotease FtsH OS=Oceanicola batsensis HTCC2597
Align length 74
Score (bit) 43.5
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953938|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_B18, 5'
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3TZ18|A3TZ18_9RHOB ATP-dependent metalloprotease FtsH OS=Oce...    44   0.007
tr|B0MRR1|B0MRR1_9FIRM Putative uncharacterized protein OS=Eubac...    39   0.14 
tr|A9TCW3|A9TCW3_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.52 
tr|B5UY14|B5UY14_BACCE Putative uncharacterized protein OS=Bacil...    35   2.0  
tr|Q167Z2|Q167Z2_ROSDO Cell division protein FtsH OS=Roseobacter...    35   3.4  
tr|A5BYH2|A5BYH2_VITVI Putative uncharacterized protein OS=Vitis...    34   5.8  
tr|A5B4K9|A5B4K9_VITVI Putative uncharacterized protein OS=Vitis...    34   5.8  
tr|Q4KD79|Q4KD79_PSEF5 Thermolabile hemolysin VCA0218 , putative...    34   5.8  
tr|A9HBC8|A9HBC8_9RHOB Cell division protein FtsH OS=Roseobacter...    33   7.5  
tr|A5C8W4|A5C8W4_VITVI Putative uncharacterized protein OS=Vitis...    33   9.8  
tr|Q232L9|Q232L9_TETTH Putative uncharacterized protein OS=Tetra...    33   9.8  
tr|Q6CP89|Q6CP89_KLULA KLLA0E06711p OS=Kluyveromyces lactis GN=K...    33   9.8  

>tr|A3TZ18|A3TZ18_9RHOB ATP-dependent metalloprotease FtsH
           OS=Oceanicola batsensis HTCC2597 GN=OB2597_15680 PE=4
           SV=1
          Length = 639

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +2

Query: 50  GNGSNGVVKVDAYFKEAVDTDPETNAEDAFQ---ELLKEREEEINQVAEKVMQYLKIAGT 220
           GNG+ G   V A+ KE ++ + +   EDA+    ++L ER+EE  ++A+ +++Y  + G 
Sbjct: 529 GNGAGGF-SVSAHTKELIEEEVKRMIEDAYNHAYKILTERQEEWERLAQGLLEYETLTGD 587

Query: 221 SLVQV*NGEGAHSK 262
            + +V NGE  +S+
Sbjct: 588 EIKRVMNGEPPNSE 601


>tr|B0MRR1|B0MRR1_9FIRM Putative uncharacterized protein
           OS=Eubacterium siraeum DSM 15702 GN=EUBSIR_02543 PE=4
           SV=1
          Length = 661

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 24/82 (29%), Positives = 43/82 (52%)
 Frame = +2

Query: 2   HDSSRTFMMFKVKPSPGNGSNGVVKVDAYFKEAVDTDPETNAEDAFQELLKEREEEINQV 181
           HD+S  F+            N   ++D   +E +D    T+ E+A Q LL  R +++++V
Sbjct: 548 HDNSEVFLGRDYSQGRNYSENVAAEIDGEIRELID----TSYENAKQILLNHR-DQLDKV 602

Query: 182 AEKVMQYLKIAGTSLVQV*NGE 247
           A  +M++ KI G   +++ NGE
Sbjct: 603 AHYLMEHEKIDGDDFIKLMNGE 624


>tr|A9TCW3|A9TCW3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169354 PE=4 SV=1
          Length = 523

 Score = 37.4 bits (85), Expect = 0.52
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +2

Query: 2   HDSSRTFMMFKVKPSPGNGSNGVVKVDAYFKEAVDTDPETNAEDAFQELLKEREEEINQV 181
           ++ ++TFMM +      NG +          + +D   E     A QELL+ERE E+  V
Sbjct: 445 YNINKTFMMMRTPQKETNGHDS-----KKIGDVLDASDEEKKLQALQELLEERENELQAV 499

Query: 182 AEKVMQYLKIAGTSL 226
           A KV    K  G ++
Sbjct: 500 ANKVSARCKKLGIAV 514


>tr|B5UY14|B5UY14_BACCE Putative uncharacterized protein OS=Bacillus
           cereus AH1134 GN=BCAH1134_C0389 PE=4 SV=1
          Length = 180

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
 Frame = -2

Query: 465 DNFSIKATY*IRCNMLHQGKN------------PRAKDVVSKLKDPWNYTSYSSNSKRGP 322
           D F   A Y +RCN LH G +              +KD V +L D    TSYS + +   
Sbjct: 67  DRFDGDAVYKLRCNFLHDGSSDIREYMRGKYNQTVSKDFVFELTD--TMTSYSKSWENNE 124

Query: 321 DKLSIQVHINSAIMHARHCHLLC 253
           D  SI++ I         CH +C
Sbjct: 125 DDCSIRIEIGV----IDFCHKMC 143


>tr|Q167Z2|Q167Z2_ROSDO Cell division protein FtsH OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=ftsH PE=4
           SV=1
          Length = 641

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +2

Query: 56  GSNGVVKVDAYFKEAVDTDPETNAEDAFQ---ELLKEREEEINQVAEKVMQYLKIAGTSL 226
           G+     V A  KE ++ + +   +D ++   +++KE E E  ++A+ +++Y  + G  +
Sbjct: 529 GNTAGFSVSANTKELIEEEVQRFIQDGYEWASKIIKENEVEFERLAQGLLEYETLTGEEI 588

Query: 227 VQV*NGE 247
            +V NGE
Sbjct: 589 KRVMNGE 595


>tr|A5BYH2|A5BYH2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035125 PE=4 SV=1
          Length = 575

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 24/91 (26%), Positives = 38/91 (41%)
 Frame = -2

Query: 501 ISKQRCLKKHIEDNFSIKATY*IRCNMLHQGKNPRAKDVVSKLKDPWNYTSYSSNSKRGP 322
           + K+  +KKH+   F ++A Y        QGKN R K  V ++  P     ++    R  
Sbjct: 281 VIKKELMKKHMPPPF-LQALYDKIIQRKPQGKN-RGKTGVCEISQPLRNRHFAVKPVRSL 338

Query: 321 DKLSIQVHINSAIMHARHCHLLCAPSPFHTC 229
             LS ++   +    A  CH      PF +C
Sbjct: 339 KPLSTKIFAAAKPSLAHECHFAAQEPPFRSC 369


>tr|A5B4K9|A5B4K9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006036 PE=4 SV=1
          Length = 866

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -2

Query: 414 QGKNPRAKDVVSKLKDPWNYTSYSSNSKRGPDKLSIQVHINSAIMHARHCHLLCAPSPFH 235
           QGKN R K  V ++  P     +++   R P  LS ++   +    A  CH      PF 
Sbjct: 621 QGKN-RGKTGVCEISQPLRNRHFAAKPVRSPIALSAKIFAAAKPSLAHECHFAAQEPPFR 679

Query: 234 TCTS 223
           +C S
Sbjct: 680 SCES 683


>tr|Q4KD79|Q4KD79_PSEF5 Thermolabile hemolysin VCA0218 , putative
           OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
           GN=PFL_2697 PE=4 SV=1
          Length = 304

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 350 HIPAILKGAQIS*VSRFTLILQSCMQGIVTYYVPLHHFTLAQAMCLQFSNT 198
           H+PA+++G Q+   +++  IL+  +  ++      HH ++     L FSNT
Sbjct: 192 HVPAVVQGNQVKNATQYQQILEQKLPAVLATLANAHHVSIGYFDHLAFSNT 242


>tr|A9HBC8|A9HBC8_9RHOB Cell division protein FtsH OS=Roseobacter
           litoralis Och 149 GN=RLO149_17778 PE=4 SV=1
          Length = 624

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +2

Query: 56  GSNGVVKVDAYFKEAVDTDPETNAEDAFQ---ELLKEREEEINQVAEKVMQYLKIAGTSL 226
           G+     V A  KE ++ + +   +D ++   +++KE E E  ++A+ +++Y  + G  +
Sbjct: 514 GNTAGFSVSANTKELIEEEVQRFIQDGYESASKIIKENEVEFERLAQGLLEYETLTGEEI 573

Query: 227 VQV*NGE 247
            +V NG+
Sbjct: 574 KRVMNGD 580


>tr|A5C8W4|A5C8W4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010107 PE=4 SV=1
          Length = 604

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = -2

Query: 483 LKKHIEDNFSIKATY*IRCNMLHQGKNPRAKDVVSKLKDPWNYTSYSSNSKRGPDKLSIQ 304
           +KKH+   F ++A Y        QGKN R K  V ++  P     +++   R P  LS +
Sbjct: 412 MKKHMPPPF-LQALYGKIIQTKSQGKN-RGKTGVCEISQPLRNRHFAAKPVRSPIALSAK 469

Query: 303 VHINSAIMHARHCHLLCAPSPFHTC 229
           +   +  + A  CH       F +C
Sbjct: 470 IFAAAKPILAHECHFAAQEPSFGSC 494