NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953842
Clone id TST39A01NGRL0018_N17
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_N17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATTGATTTCGGGGCTACTGTCGAGACCTTCCGTTGCCATCACTGTAGCTCGTCGGCCTCG
TCCTCTGTCTCAACATGGGGCTCCGCCATTCCACGTTGTCAGGAACAGCTGCTTGGGTGT
TACTCCGCGTCATGTGTGCTACACGACACTGAGTAAGGAGTCAAGTCTGTCAGATACCAA
GAAGGCAGCACTGGAAGTGGGAAAAGGAGTTGGTCTGGTGGCTTTTTATGCTGATAATAA
TGTCGTGAGTTTGCCAGATGGTCATCGCTTTCCAATGGACAAGACGATGATTGTTGAAAG
GATTCTGGTTGTGTCTCTGCTGCATGTGGCTGTTGTTGCCATGGGGCTAAGAACGTGTAG
CATAATTGTCAAATTTGCGTCTTTTGAAGAAGGTATAGGGCGACGAGGCTAATGCTTGAA
GATGATGCTTCTTTAGTGAATCTTTTGACTACTCATGTTTCTCCAGCTGCTTCCACTCAA
GAACTATGTGTGGTACACGAAGAACGGTACTTG
■■Homology search results ■■ -
sp_hit_id P38898
Definition sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C OS=Saccharomyces cerevisiae
Align length 66
Score (bit) 34.3
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953842|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_N17, 5'
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C OS...    34   0.35 
sp|Q7TNF8|RIMB1_MOUSE Peripheral-type benzodiazepine receptor-as...    32   1.3  
sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein...    32   1.7  
sp|Q9JIR0|RIMB1_RAT Peripheral-type benzodiazepine receptor-asso...    31   2.9  
sp|Q870Q4|MON1_NEUCR Vacuolar fusion protein mon-1 OS=Neurospora...    31   3.0  
sp|Q0UJJ7|NST1_PHANO Stress response protein NST1 OS=Phaeosphaer...    31   3.8  
sp|B0JU67|IF2_MICAN Translation initiation factor IF-2 OS=Microc...    31   3.8  
sp|P12880|CAPP_CORGL Phosphoenolpyruvate carboxylase OS=Coryneba...    31   3.8  
sp|Q93MH3|CAPP_CORCT Phosphoenolpyruvate carboxylase OS=Coryneba...    31   3.8  
sp|P13599|FCGRN_RAT IgG receptor FcRn large subunit p51 OS=Rattu...    30   5.0  
sp|P56185|RNJ_HELPY Ribonuclease J OS=Helicobacter pylori GN=HP_...    30   6.5  
sp|Q61559|FCGRN_MOUSE IgG receptor FcRn large subunit p51 OS=Mus...    30   6.5  
sp|P55899|FCGRN_HUMAN IgG receptor FcRn large subunit p51 OS=Hom...    30   6.5  
sp|Q9Y6D6|BIG1_HUMAN Brefeldin A-inhibited guanine nucleotide-ex...    30   6.5  
sp|O95153|RIMB1_HUMAN Peripheral-type benzodiazepine receptor-as...    30   8.5  
sp|Q9H0W9|CK054_HUMAN Ester hydrolase C11orf54 OS=Homo sapiens G...    30   8.5  

>sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C
           OS=Saccharomyces cerevisiae GN=YHR217C PE=5 SV=1
          Length = 153

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -2

Query: 329 PHAAETQPESFQQSSSCPLESDDHLANSRHYYQHKKPPDQLLFPLPVLPSWYLTDLTPYS 150
           P    T P      S+ PL +  HL+    YY H  P   +   LP+  S  +T L PY 
Sbjct: 80  PSHYPTSPLVTLPHSTIPLPTTIHLST---YYYHPPPIITVTLQLPISNSTTITLLLPYH 136

Query: 149 VSCSTH 132
             C TH
Sbjct: 137 PPCPTH 142


>sp|Q7TNF8|RIMB1_MOUSE Peripheral-type benzodiazepine
           receptor-associated protein 1 OS=Mus musculus GN=Bzrap1
           PE=1 SV=2
          Length = 1846

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 77  GAPPFHVVRNSCLGVTPRHVCYTTLSKESSLSDTKKAALEVGKGVGLV 220
           G PP  V+ N  L   P HV    L+ + S SD  +  L VG G G+V
Sbjct: 834 GVPPKAVLENMDLRTGPLHVSVQALTSKGS-SDPLRCCLAVGAGAGVV 880


>sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein 62
           OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=2
           SV=2
          Length = 702

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -3

Query: 367 NYATRS*PHGNNSHMQQRHNQNPFNNHRLVHWKAMTIWQ 251
           NY  R   +GN  H +Q HNQNP    R   WK   I+Q
Sbjct: 649 NYHGRQGMNGNQYHDRQNHNQNP---QRFRPWKPCFIYQ 684


>sp|Q9JIR0|RIMB1_RAT Peripheral-type benzodiazepine
           receptor-associated protein 1 OS=Rattus norvegicus
           GN=Bzrap1 PE=1 SV=2
          Length = 1847

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 77  GAPPFHVVRNSCLGVTPRHVCYTTLSKESSLSDTKKAALEVGKGVGLV 220
           G PP  V+ N  L   P HV    L+ + S SD  +  L +G G G+V
Sbjct: 836 GVPPKAVLENMDLRAGPLHVSVQALTSKGS-SDPLRCCLAMGAGAGVV 882


>sp|Q870Q4|MON1_NEUCR Vacuolar fusion protein mon-1 OS=Neurospora
           crassa GN=mon-1 PE=3 SV=1
          Length = 678

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = -1

Query: 408 PRRPIPSSKDANLTIMLHVLSPMATTATCSRDTTRILSTIIVLSI----GKR*P-SGKLT 244
           PRRP P   D   +  LHV       A  SR TT++ STI + ++    G R   S   T
Sbjct: 40  PRRPSPKLSDDGASGALHV-------AAASRPTTQV-STIDISTLSFPDGSRGTFSTSAT 91

Query: 243 TLLSA*KATRPTPFPTSSAA 184
           +  SA  ATR    P SSA+
Sbjct: 92  SATSATSATRSVASPQSSAS 111


>sp|Q0UJJ7|NST1_PHANO Stress response protein NST1 OS=Phaeosphaeria
           nodorum GN=NST1 PE=3 SV=3
          Length = 1202

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 427 HHLQALASSPY--TFFKRRKFDNYATRS*PHGNNSHMQQRHNQNPFNNHRLVHWKAMTIW 254
           H+ Q  A +P   +  K RK    A    PH    H+  RH+  P  NH +V   + +IW
Sbjct: 237 HYQQGYAHAPIPSSSKKPRKKKKGAAAHPPHAYTQHVAPRHSPAP--NHSMVTSGSKSIW 294

Query: 253 QTHDI 239
            T  +
Sbjct: 295 NTSTV 299


>sp|B0JU67|IF2_MICAN Translation initiation factor IF-2
           OS=Microcystis aeruginosa (strain NIES-843) GN=infB PE=3
           SV=1
          Length = 1010

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 5   ISGLLSRPSVAITVARRPRPLSQHGAPP 88
           +SGL++ PS  ++ AR P+P +   APP
Sbjct: 357 LSGLINTPSFTLSTARPPKPPTAKAAPP 384


>sp|P12880|CAPP_CORGL Phosphoenolpyruvate carboxylase
           OS=Corynebacterium glutamicum GN=ppc PE=1 SV=4
          Length = 919

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
 Frame = +2

Query: 32  VAITVARRPRPLSQHGAPPFHVVRNSCLGV-----------TPRHVCYTTLSKESSLSDT 178
           V +   R PRPL  HG+  +  V +  LG+            PR V +  +S  SS++D 
Sbjct: 446 VLLKELRSPRPLIPHGSDEYSEVTDRELGIFRTASEAVKKFGPRMVPHCIISMASSVTDV 505

Query: 179 KKAALEVGKGVGLVAFYADN 238
            +  + + K  GL+A   DN
Sbjct: 506 LEPMVLL-KEFGLIAANGDN 524


>sp|Q93MH3|CAPP_CORCT Phosphoenolpyruvate carboxylase
           OS=Corynebacterium crenatum GN=ppc PE=3 SV=1
          Length = 919

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
 Frame = +2

Query: 32  VAITVARRPRPLSQHGAPPFHVVRNSCLGV-----------TPRHVCYTTLSKESSLSDT 178
           V +   R PRPL  HG+  +  V +  LG+            PR V +  +S  SS++D 
Sbjct: 446 VLLKELRSPRPLIPHGSDEYSEVTDRELGIFRTASEAVKKFGPRMVPHCIISMASSVTDV 505

Query: 179 KKAALEVGKGVGLVAFYADN 238
            +  + + K  GL+A   DN
Sbjct: 506 LEPMVLL-KEFGLIAANGDN 524


>sp|P13599|FCGRN_RAT IgG receptor FcRn large subunit p51 OS=Rattus
           norvegicus GN=Fcgrt PE=1 SV=1
          Length = 366

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 341 WQQQPHAAETQPESFQQSSSCPLESDDHLANSRHYYQHKKPPDQLLFPLP 192
           W +QP AA  + E     +SCP     HL   R   + K+PP   L   P
Sbjct: 165 WMKQPEAARKESEFLL--TSCPERLLGHLERGRQNLEWKEPPSMRLKARP 212
tr_hit_id A1VMP9
Definition tr|A1VMP9|A1VMP9_POLNA Histone deacetylase superfamily OS=Polaromonas naphthalenivorans (strain CJ2)
Align length 21
Score (bit) 37.0
E-value 0.01
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953842|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_N17, 5'
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1VMP9|A1VMP9_POLNA Histone deacetylase superfamily OS=Polaro...    37   0.010
tr|Q128P1|Q128P1_POLSJ Histone deacetylase superfamily OS=Polaro...    40   0.051
tr|Q0KBV3|Q0KBV3_RALEH Deacetylase, histone deacetylase family O...    39   0.19 
tr|A9RXW2|A9RXW2_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.43 
tr|Q1LP39|Q1LP39_RALME Histone deacetylase superfamily OS=Ralsto...    37   0.74 
tr|Q1AWW0|Q1AWW0_RUBXD Histone deacetylase superfamily OS=Rubrob...    37   0.74 
tr|B3R4M5|B3R4M5_CUPTR Histone deacetylase OS=Cupriavidus taiwan...    36   0.96 
tr|B1XVX0|B1XVX0_POLNS Histone deacetylase superfamily OS=Polynu...    36   0.96 
tr|A9WDA8|A9WDA8_CHLAA Histone deacetylase superfamily OS=Chloro...    36   1.3  
tr|B2QP72|B2QP72_9CHLR Histone deacetylase superfamily OS=Chloro...    36   1.3  
tr|A4S8F6|A4S8F6_OSTLU Predicted protein OS=Ostreococcus lucimar...    36   1.3  
tr|A3RPG5|A3RPG5_RALSO Deacetylase OS=Ralstonia solanacearum UW5...    35   2.1  
tr|Q6CIL8|Q6CIL8_KLULA KLLA0F25630p OS=Kluyveromyces lactis GN=K...    35   2.1  
tr|A2SFY0|A2SFY0_METPP Putative uncharacterized protein OS=Methy...    33   2.2  
tr|A3IXM3|A3IXM3_9CHRO Histone deacetylase/AcuC/AphA family prot...    35   2.8  
tr|A6RD82|A6RD82_AJECN Predicted protein OS=Ajellomyces capsulat...    35   2.8  
tr|Q4T1X3|Q4T1X3_TETNG Chromosome 1 SCAF10457, whole genome shot...    34   3.7  
tr|A9IQ00|A9IQ00_BORPD Putative uncharacterized protein OS=Borde...    34   3.7  
tr|A4SZ29|A4SZ29_POLSQ Histone deacetylase superfamily OS=Polynu...    34   3.7  
tr|B8G9Y7|B8G9Y7_9CHLR Histone deacetylase superfamily OS=Chloro...    34   3.7  
tr|A4QEF9|A4QEF9_CORGB Phosphoenolpyruvate carboxylase OS=Coryne...    34   4.8  
tr|A1K5W3|A1K5W3_AZOSB Histone deacetylase family protein OS=Azo...    34   4.8  
tr|Q6F5A7|Q6F5A7_CORGL Phosphoenolpyruvate carboxylase OS=Coryne...    34   4.8  
tr|B1Y1F9|B1Y1F9_LEPCP Histone deacetylase superfamily OS=Leptot...    30   6.0  
tr|Q8XZ00|Q8XZ00_RALSO Putative uncharacterized protein OS=Ralst...    33   6.2  
tr|B2UFX5|B2UFX5_RALPJ Histone deacetylase superfamily OS=Ralsto...    33   6.2  
tr|A7CLM7|A7CLM7_BURPI Histone deacetylase superfamily OS=Ralsto...    33   6.2  
tr|A3Z5A2|A3Z5A2_9SYNE Putative sulfate transporter OS=Synechoco...    33   6.2  
tr|Q00U49|Q00U49_OSTTA Histone deacetylase superfamily (ISS) OS=...    33   6.2  
tr|Q96VB2|Q96VB2_MAGGR A15 protein OS=Magnaporthe grisea GN=A15 ...    33   6.2  

>tr|A1VMP9|A1VMP9_POLNA Histone deacetylase superfamily
           OS=Polaromonas naphthalenivorans (strain CJ2)
           GN=Pnap_1613 PE=4 SV=1
          Length = 333

 Score = 37.0 bits (84), Expect(2) = 0.010
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 221 AFYADNNVVSLPDGHRFPMDK 283
           AFYADN V+ LP GHRFPM K
Sbjct: 18  AFYADNFVLPLPTGHRFPMRK 38



 Score = 25.4 bits (54), Expect(2) = 0.010
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 388 RRYRATRLMLEDDASLVNLLTTHVSPAASTQELCVVHEERYL 513
           R+Y+  R  L  +   V ++    +PAAS  EL +VH   Y+
Sbjct: 37  RKYKLLRERLVSELPAVRMMQ---APAASDGELALVHAPAYI 75


>tr|Q128P1|Q128P1_POLSJ Histone deacetylase superfamily
           OS=Polaromonas sp. (strain JS666 / ATCC BAA-500)
           GN=Bpro_3087 PE=4 SV=1
          Length = 337

 Score = 40.4 bits (93), Expect = 0.051
 Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
 Frame = +2

Query: 176 TKKAALEVGKGVG--------LVAFYADNNVVSLPDGHRFPMDK 283
           T++ AL V  G+         L AFYADN V+ LP GHRFPM K
Sbjct: 3   TRRCALAVATGIFEHLPGQPMLQAFYADNFVLPLPPGHRFPMGK 46


>tr|Q0KBV3|Q0KBV3_RALEH Deacetylase, histone deacetylase family
           OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428
           / Stanier 337) GN=H16_A1382 PE=4 SV=1
          Length = 369

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 176 TKKAALEVGKGVGLVAFYADNNVVSLPDGHRFPMDK 283
           T K      +   ++AFYAD+ V+ LP GHRFPM K
Sbjct: 51  TNKDVNRTAQATSMLAFYADHFVLPLPPGHRFPMRK 86


>tr|A9RXW2|A9RXW2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71975 PE=4 SV=1
          Length = 497

 Score = 37.4 bits (85), Expect = 0.43
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +2

Query: 206 GVGLVAFYADNNVVSLPDGHRFPMDK 283
           G GL+AF AD++ V LP+ HRFPM K
Sbjct: 141 GEGLIAFCADHHEVPLPEDHRFPMTK 166


>tr|Q1LP39|Q1LP39_RALME Histone deacetylase superfamily OS=Ralstonia
           metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
           GN=Rmet_1201 PE=4 SV=1
          Length = 323

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +2

Query: 209 VGLVAFYADNNVVSLPDGHRFPMDK 283
           + ++AFYAD+ V+ LP GHRFPM K
Sbjct: 15  IPMLAFYADHFVLPLPPGHRFPMRK 39


>tr|Q1AWW0|Q1AWW0_RUBXD Histone deacetylase superfamily
           OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC
           16129) GN=Rxyl_1152 PE=4 SV=1
          Length = 301

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +2

Query: 224 FYADNNVVSLPDGHRFPMDK-TMIVERI 304
           FY+D+ V+ LP+GHRFPM K  M+ ER+
Sbjct: 4   FYSDSYVIPLPEGHRFPMRKYAMLRERV 31


>tr|B3R4M5|B3R4M5_CUPTR Histone deacetylase OS=Cupriavidus
           taiwanensis (strain R1 / LMG 19424) GN=RALTA_A1299 PE=4
           SV=1
          Length = 314

 Score = 36.2 bits (82), Expect = 0.96
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 215 LVAFYADNNVVSLPDGHRFPMDK 283
           ++AFYAD+ V+ LP GHRFPM K
Sbjct: 1   MLAFYADHFVLPLPPGHRFPMRK 23


>tr|B1XVX0|B1XVX0_POLNS Histone deacetylase superfamily
           OS=Polynucleobacter necessarius (strain STIR1)
           GN=Pnec_1393 PE=4 SV=1
          Length = 299

 Score = 36.2 bits (82), Expect = 0.96
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 221 AFYADNNVVSLPDGHRFPMDK 283
           AFY D+ V+ LP+GHRFPM+K
Sbjct: 3   AFYTDHFVLPLPEGHRFPMEK 23


>tr|A9WDA8|A9WDA8_CHLAA Histone deacetylase superfamily
           OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
           / J-10-fl) GN=Caur_1858 PE=4 SV=1
          Length = 298

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 221 AFYADNNVVSLPDGHRFPMDK-TMIVERI 304
           AFY+D  V+ LP GHRFPM+K  ++ ER+
Sbjct: 3   AFYSDTFVLPLPPGHRFPMEKYALLRERV 31


>tr|B2QP72|B2QP72_9CHLR Histone deacetylase superfamily
           OS=Chloroflexus sp. Y-400-fl GN=Chy400DRAFT_2787 PE=4
           SV=1
          Length = 298

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 221 AFYADNNVVSLPDGHRFPMDK-TMIVERI 304
           AFY+D  V+ LP GHRFPM+K  ++ ER+
Sbjct: 3   AFYSDTFVLPLPPGHRFPMEKYALLRERV 31