NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953833
Clone id TST39A01NGRL0018_N07
Library
Length 403
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_N07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGAATGCAATCCTGCTCCTCGGCCTCTCTCCGGGAGGTCAGAGACTGCGTACCGTTCACC
ATCCCAAACCAAGGCACATAACAATACTTCCCTGCTAGCGGTGCCTACGCTTTACCCTCT
GGGTGTCCAACACCTGCGATCTATGTCCCAGTAATCCCTTCTACCGAGCTGTCTTCTTTG
TTGCCCCCGCAGAGGCAAAGACTGAAGCTGACCCTGCCAATGATGGCGTAGGTATCATGT
GAGCCATTCTATGACGGCGGCGACCTTCAGAGGAATGGATGCACGAGGACCTCTGCCATC
TCTGCAAAGAGTCACCCCTGTCTTAGCCATCAGATGGTCATGTGTGGCTGCCCTTGCCCT
GACTGCCTTCCAAGCTGCGTACAGATTCTTTTACAACCCTGTC
■■Homology search results ■■ -
sp_hit_id Q15323
Definition sp|Q15323|K1H1_HUMAN Keratin, type I cuticular Ha1 OS=Homo sapiens
Align length 86
Score (bit) 35.0
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953833|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_N07, 5'
         (403 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15323|K1H1_HUMAN Keratin, type I cuticular Ha1 OS=Homo sapie...    35   0.12 
sp|A5A6M5|K1H1_PANTR Keratin, type I cuticular Ha1 OS=Pan troglo...    35   0.15 
sp|A7HU86|MTNB_PARL1 Methylthioribulose-1-phosphate dehydratase ...    33   0.34 
sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3         33   0.44 
sp|O70244|CUBN_RAT Cubilin OS=Rattus norvegicus GN=Cubn PE=1 SV=2      32   0.75 
sp|Q9JLB4|CUBN_MOUSE Cubilin OS=Mus musculus GN=Cubn PE=1 SV=2         32   0.97 
sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1     32   0.97 
sp|Q47Z18|UVRC_COLP3 UvrABC system protein C OS=Colwellia psychr...    32   1.3  
sp|Q61765|K1H1_MOUSE Keratin, type I cuticular Ha1 OS=Mus muscul...    30   2.8  
sp|P25180|HN_SV41 Hemagglutinin-neuraminidase OS=Simian virus 41...    30   2.8  
sp|Q0BY00|UVRC_HYPNA UvrABC system protein C OS=Hyphomonas neptu...    30   3.7  
sp|Q69MT2|FH15_ORYSJ Formin-like protein 15 OS=Oryza sativa subs...    30   3.7  
sp|Q2SF17|UVRC_HAHCH UvrABC system protein C OS=Hahella chejuens...    30   4.8  
sp|Q64298|MCSP_RAT Sperm mitochondrial-associated cysteine-rich ...    30   4.8  
sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopu...    30   4.8  
sp|Q9EPI2|GFRA4_RAT GDNF family receptor alpha-4 OS=Rattus norve...    30   4.8  
sp|Q5WTF5|UVRC_LEGPL UvrABC system protein C OS=Legionella pneum...    29   6.3  
sp|Q5ZS74|UVRC_LEGPH UvrABC system protein C OS=Legionella pneum...    29   6.3  
sp|A5IAT1|UVRC_LEGPC UvrABC system protein C OS=Legionella pneum...    29   6.3  
sp|Q5X1P5|UVRC_LEGPA UvrABC system protein C OS=Legionella pneum...    29   6.3  
sp|Q0A8X6|UVRC_ALHEH UvrABC system protein C OS=Alkalilimnicola ...    29   6.3  
sp|P59881|TRUB_PROMM tRNA pseudouridine synthase B OS=Prochloroc...    29   6.3  
sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopu...    29   6.3  
sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE OS=Arabidopsis thali...    29   8.2  
sp|Q00961|NMDE3_RAT Glutamate [NMDA] receptor subunit epsilon-3 ...    29   8.2  
sp|Q01098|NMDE3_MOUSE Glutamate [NMDA] receptor subunit epsilon-...    29   8.2  
sp|Q5M865|PA1_RAT PAXIP1-associated protein 1 OS=Rattus norvegic...    29   8.3  
sp|Q9BTK6|PA1_HUMAN PAXIP1-associated protein 1 OS=Homo sapiens ...    29   8.3  

>sp|Q15323|K1H1_HUMAN Keratin, type I cuticular Ha1 OS=Homo sapiens
           GN=KRT31 PE=1 SV=3
          Length = 416

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
 Frame = +1

Query: 166 ELSSLLPPQRQRLKLTLPMMA*VSCE-----PFYDGGD--LQRNGCTRTSAISAKSHPCL 324
           E+ S L  Q Q  ++ L + A + CE        +  D  L  N C  T+A S    PCL
Sbjct: 327 EIRSDLERQNQEYQVLLDVRARLECEINTYRSLLESEDCNLPSNPCATTNACSKPIGPCL 386

Query: 325 SHQMVMCGCPCPDCLPSCVQILLQPC 402
           S+    C  P P C P   +    PC
Sbjct: 387 SNPCTSCVPPAP-CTPCAPRPRCGPC 411


>sp|A5A6M5|K1H1_PANTR Keratin, type I cuticular Ha1 OS=Pan
           troglodytes GN=KRT31 PE=2 SV=1
          Length = 416

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
 Frame = +1

Query: 166 ELSSLLPPQRQRLKLTLPMMA*VSCE-----PFYDGGD--LQRNGCTRTSAISAKSHPCL 324
           E+ S L  Q Q  ++ L + A + CE        +  D  L  N C  T+A S    PCL
Sbjct: 327 EIRSDLERQNQEYQVLLDVRARLECEINTYRSLLESEDCNLPSNPCATTNACSKPIGPCL 386

Query: 325 SHQMVMCGCPCPDCLPSCVQILLQPC 402
           S+    C  P P C P   +    PC
Sbjct: 387 SNPCTPCVPPAP-CTPCAPRPRCGPC 411


>sp|A7HU86|MTNB_PARL1 Methylthioribulose-1-phosphate dehydratase
           OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023
           / NCIMB 13966) GN=mtnB PE=3 SV=2
          Length = 204

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = -3

Query: 221 IGRVSFSLCLCGGNKEDSSVEGITGT*IAGVGHPEGKA*APL-AGKYCYVPWFGMVNGTQ 45
           +  +S +L   G NK +    G+    IAG  HP   A APL   +Y   P  G ++   
Sbjct: 38  MNELSAALTATGANKAELDENGVIEAEIAGAKHPRASAEAPLHLARYRAAPGIGAISHMH 97

Query: 44  SLT----SRREA 21
           S+     SRR A
Sbjct: 98  SMAATVLSRRHA 109


>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3
          Length = 3623

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
 Frame = +1

Query: 211 TLPMMA*VSCEPFYDGGDLQRNGCTRTSAISAKSHPCLSHQMV------MCGCPC----P 360
           TL  +   +C P Y G     NGC + S I   SHPCL+ Q +       C C       
Sbjct: 369 TLGSLPLCTCLPGYTGNGYGPNGCVQLSNI-CLSHPCLNGQCIDTVSGYFCKCDSGWTGV 427

Query: 361 DCLPSCVQILLQPC 402
           +C  +  + L  PC
Sbjct: 428 NCTENINECLSNPC 441


>sp|O70244|CUBN_RAT Cubilin OS=Rattus norvegicus GN=Cubn PE=1 SV=2
          Length = 3623

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 235 SCEPFYDGGDLQRNGCTRTSAISAKSHPCLSHQMV 339
           +C P Y G     NGC R S I ++ HPC++ Q +
Sbjct: 377 TCPPGYTGNGYGSNGCVRLSNICSR-HPCVNGQCI 410


>sp|Q9JLB4|CUBN_MOUSE Cubilin OS=Mus musculus GN=Cubn PE=1 SV=2
          Length = 3623

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
 Frame = +1

Query: 235 SCEPFYDGGDLQRNGCTRTSAISAKSHPCLSHQMV------MCGCPC----PDCLPSCVQ 384
           +C P Y G     NGC R S + ++ HPC++ Q +       C C       +C  +  +
Sbjct: 377 TCPPGYTGNGYGSNGCVRLSNMCSR-HPCVNGQCIETVSSYFCKCDSGWFGQNCTENINE 435

Query: 385 ILLQPC 402
            +  PC
Sbjct: 436 CVSNPC 441


>sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1
          Length = 3620

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
 Frame = +1

Query: 235 SCEPFYDGGDLQRNGCTRTSAISAKSHPCLSHQMV------MCGCPCP----DCLPSCVQ 384
           +C P Y G     NGC + S  +  SHPCL+ Q +      +C C       +C  +  +
Sbjct: 374 TCLPGYTGNGYGPNGCAQLSD-TCLSHPCLNGQCIETVSGYLCKCESGWAGINCTENINE 432

Query: 385 ILLQPC 402
            L  PC
Sbjct: 433 CLSNPC 438


>sp|Q47Z18|UVRC_COLP3 UvrABC system protein C OS=Colwellia
           psychrerythraea (strain 34H / ATCC BAA-681) GN=uvrC PE=3
           SV=1
          Length = 639

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 304 AKSHPCLSHQMVMCGCPCPD 363
           A+S PCL HQ+  C  PC D
Sbjct: 176 ARSRPCLQHQLGRCSAPCVD 195


>sp|Q61765|K1H1_MOUSE Keratin, type I cuticular Ha1 OS=Mus musculus
           GN=Krt31 PE=2 SV=2
          Length = 416

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
 Frame = +1

Query: 166 ELSSLLPPQRQRLKLTLPMMA*VSCEPFYDGGDLQR-------NGCTRTSAISAKSHPCL 324
           E+ + L  Q Q  ++ L + A + CE     G L+        N C  ++A      PC+
Sbjct: 327 EIRADLERQNQEYQVLLDVKARLECEINTYRGLLESEDCKLPCNPCATSNACGKPIGPCV 386

Query: 325 SHQMVMCGCPCPDCLPSCVQILLQPC 402
           S+  V C  P P C P   +    PC
Sbjct: 387 SNPCVPCPPPAP-CTPCVPRPRCGPC 411


>sp|P25180|HN_SV41 Hemagglutinin-neuraminidase OS=Simian virus 41
           GN=HN PE=3 SV=1
          Length = 568

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 277 GCTRTSAIS-AKSHPCLSHQMVMCGC 351
           GCTR  + S  K+H C SH +++ GC
Sbjct: 161 GCTRIPSFSLTKTHWCYSHNVILAGC 186
tr_hit_id B3K0J3
Definition tr|B3K0J3|B3K0J3_9DELT Multi-sensor hybrid histidine kinase OS=Geobacter sp. M21
Align length 65
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953833|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_N07, 5'
         (403 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3K0J3|B3K0J3_9DELT Multi-sensor hybrid histidine kinase OS=G...    34   3.2  
tr|B5E884|B5E884_GEOBB Multi-sensor hybrid histidine kinase OS=G...    33   5.5  
tr|B4KP84|B4KP84_DROMO GI20300 OS=Drosophila mojavensis GN=GI203...    33   5.5  
tr|Q7LC53|Q7LC53_HUMAN Intrinsic factor-vitamin B12 receptor (Fr...    33   7.2  
tr|B8KKC0|B8KKC0_9GAMM Phenazine biosynthesis PhzC/PhzF protein ...    33   9.4  
tr|B0W5L2|B0W5L2_CULQU Cubilin OS=Culex quinquefasciatus GN=Cpip...    33   9.4  
tr|Q16275|Q16275_HUMAN Type I hair keratin (Fragment) OS=Homo sa...    33   9.4  

>tr|B3K0J3|B3K0J3_9DELT Multi-sensor hybrid histidine kinase
           OS=Geobacter sp. M21 GN=GM21DRAFT_3363 PE=4 SV=1
          Length = 962

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +1

Query: 187 PQRQRLKLTLPMMA*VSCEPFY------DGGDLQRNGCTRTSAISAKSHPCLSHQMVMCG 348
           PQ+   +L   +M+ +SC+ ++      + G L+ N C   SA SA+S   L + + +CG
Sbjct: 412 PQQLVDELCQKVMSYLSCDTYFNFLVDEEAGCLRLNSCAGISAESAESLQYLEYGVAICG 471

Query: 349 CPCPD 363
           C   D
Sbjct: 472 CAARD 476


>tr|B5E884|B5E884_GEOBB Multi-sensor hybrid histidine kinase
           OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 /
           DSM 16622) GN=Gbem_3051 PE=4 SV=1
          Length = 947

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +1

Query: 187 PQRQRLKLTLPMMA*VSCEPFYD------GGDLQRNGCTRTSAISAKSHPCLSHQMVMCG 348
           PQ+   +L   +M+ VSC+ +++       G L+ N C   SA  A+S   L + + +CG
Sbjct: 412 PQQLVDELCQKVMSYVSCDAYFNFLVDEQAGCLRLNACAGISAACAESLRYLEYGVAVCG 471

Query: 349 CPCPD 363
           C   D
Sbjct: 472 CAARD 476


>tr|B4KP84|B4KP84_DROMO GI20300 OS=Drosophila mojavensis GN=GI20300
           PE=4 SV=1
          Length = 165

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
 Frame = +1

Query: 43  DCVPFTIPNQGT*Q----YFPASGAYALPSGCPTPAIYVPVIPSTELSSLLPPQRQRLKL 210
           D VP  +P Q T Q    Y PA      P+G   P +Y P+      S+++         
Sbjct: 33  DAVPIAVPAQATPQAQIRYVPAQTYQPYPAGPTQPPLYPPMQQPPGSSTVIIH------- 85

Query: 211 TLPMMA*VSCEP-FYDGGDLQRNGCTRTSAISAKSHPCLSHQMVMCGC-PC---PDCLPS 375
           T+P    V  +P F      Q +  TR  A         +  + + GC PC   P C+ S
Sbjct: 86  TIPQRVPVGRDPTFVRCPACQNDVITRIEATPTGRTHLWAMVLCLIGCWPCVCVPYCMDS 145

Query: 376 CVQ 384
           C Q
Sbjct: 146 CKQ 148


>tr|Q7LC53|Q7LC53_HUMAN Intrinsic factor-vitamin B12 receptor
           (Fragment) OS=Homo sapiens GN=CUBN PE=2 SV=1
          Length = 3494

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
 Frame = +1

Query: 211 TLPMMA*VSCEPFYDGGDLQRNGCTRTSAISAKSHPCLSHQMV------MCGCPC----P 360
           TL  +   +C P Y G     NGC + S I   SHPCL+ Q +       C C       
Sbjct: 240 TLGSLPLCTCLPGYTGNGYGPNGCVQLSNI-CLSHPCLNGQCIDTVSGYFCKCDSGWTGV 298

Query: 361 DCLPSCVQILLQPC 402
           +C  +  + L  PC
Sbjct: 299 NCTENINECLSNPC 312


>tr|B8KKC0|B8KKC0_9GAMM Phenazine biosynthesis PhzC/PhzF protein
           OS=gamma proteobacterium NOR5-3 GN=NOR53_3520 PE=4 SV=1
          Length = 207

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 135 RCWTPRG*SVGTASREVLLCALVWDGERYAVSDLPERGRGAGLHS 1
           RCW+P    +      +L C   W  +  AVS L   G  A  H+
Sbjct: 2   RCWSPADSEIRLCGHGLLCCGAAWAAQDQAVSQLEMNGLRAAFHA 46


>tr|B0W5L2|B0W5L2_CULQU Cubilin OS=Culex quinquefasciatus
           GN=CpipJ_CPIJ002327 PE=4 SV=1
          Length = 3724

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
 Frame = +1

Query: 238 CEPFYDGGDLQRNGCTRTSAISAKSHPC--------LSHQMVMCGCPCPDCLPSCVQILL 393
           C P Y G      GC R +      +PC        +      C CP    LP+C + L 
Sbjct: 395 CPPGYQGSGFGPTGCIRATLSPCDLNPCKNGGTCTPVGTNNYNCSCPPGTALPNCAR-LT 453

Query: 394 QPC 402
            PC
Sbjct: 454 SPC 456


>tr|Q16275|Q16275_HUMAN Type I hair keratin (Fragment) OS=Homo
           sapiens GN=type I hair keratin PE=2 SV=1
          Length = 85

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = +1

Query: 181 LPPQRQRLKLTLPMMA*VSCE-----PFYDGGD--LQRNGCTRTSAISAKSHPCLSHQMV 339
           L  Q Q  ++ L + A + CE        +  D  L  N C  T+A S    PCLS+   
Sbjct: 1   LERQNQEYQVLLDVRARLECEINTYRSLLESEDCNLPSNPCATTNACSKPIGPCLSNPCT 60

Query: 340 MCGCPCPDCLPSCVQILLQPC 402
            C  P P C P   +    PC
Sbjct: 61  SCVPPAP-CTPCAPRPRCGPC 80