NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953740
Clone id TST39A01NGRL0018_J08
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_J08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAAGAGAGCATTTTCTGCATTCCAGTCTCCCTCCGGCTCATCTGTGCCATTACCCGTCT
CCTTTGTGCTTGTTTTGAAGGAGATCATTCTTCTTGGGTTTGGATCAAAGCAACGAATGG
AGCCAGCAGTCATTACCTTCGTCGATAATGGCCGGCAATCACAGCAGCCTCGCCACTACA
GACGGAAGGCAAATTTTGTGCAGAGCATGCCTTCTGCTTTGGGCTCAAATCCATCTTCAG
TGGGTGCCATGGATGCACCACCATCAACTTCAAATCTTCAACGCTTCTTAACTCACACTA
CCCCTCATGTCACAACTCAGTTTCTTTCCAAGACACAGCTCCGCAATGCCCAAGGATCTG
AGATGTGTGAGAAGGGCTTCTTTTCGCTGAATGATTTGTGGGAAAGCTTTGGTGAGTGGA
GTGCATATGGAGTTGGTGTTCCAATCCTTTTGGATCACAAAGAAACCGTGATGCAGTACT
ACGTGCCTTATTTGTCAGGAATTCAGCTCTACGCCCACACTGTGAATACTCAAATTCCTA
AAAGCAGAC
■■Homology search results ■■ -
sp_hit_id Q17307
Definition sp|Q17307|TRA2_CAEBR Sex-determining transformer protein 2 OS=Caenorhabditis briggsae
Align length 49
Score (bit) 30.8
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953740|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_J08, 5'
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q17307|TRA2_CAEBR Sex-determining transformer protein 2 OS=Ca...    31   4.6  
sp|Q4V793|HIPK4_RAT Homeodomain-interacting protein kinase 4 OS=...    30   7.7  
sp|Q3V016|HIPK4_MOUSE Homeodomain-interacting protein kinase 4 O...    30   7.7  
sp|Q8WP28|HIPK4_MACFA Homeodomain-interacting protein kinase 4 O...    30   7.7  
sp|P46238|GUXC_FUSOX Putative exoglucanase type C OS=Fusarium ox...    30   7.7  

>sp|Q17307|TRA2_CAEBR Sex-determining transformer protein 2
            OS=Caenorhabditis briggsae GN=tra-2 PE=1 SV=2
          Length = 1497

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 462  LCDPKGLEHQLHMHSTHQSFPTNHSAKRSPSHTSQILGHCGAVSWKETE 316
            L DP  +E  +  +      P+  + +  PS T  ++G+C  V WK  E
Sbjct: 1371 LHDPPSMEEYVQKYDDPNQPPSRRADQYPPSFTPAMVGYCEDVYWKYNE 1419


>sp|Q4V793|HIPK4_RAT Homeodomain-interacting protein kinase 4
           OS=Rattus norvegicus GN=Hipk4 PE=2 SV=1
          Length = 616

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 442 GTPTPYALHSPKLSHKSFSEKKPFSHISDPWALRS 338
           G P P+ LH+ + +H  F ++ P    ++PW L+S
Sbjct: 232 GLPKPHLLHAARKAH-HFFKRNPHPDATNPWQLKS 265


>sp|Q3V016|HIPK4_MOUSE Homeodomain-interacting protein kinase 4
           OS=Mus musculus GN=Hipk4 PE=1 SV=2
          Length = 616

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 442 GTPTPYALHSPKLSHKSFSEKKPFSHISDPWALRS 338
           G P P+ LH+ + +H  F ++ P    ++PW L+S
Sbjct: 232 GLPKPHLLHAARKAH-HFFKRNPHPDATNPWQLKS 265


>sp|Q8WP28|HIPK4_MACFA Homeodomain-interacting protein kinase 4
           OS=Macaca fascicularis GN=HIPK4 PE=2 SV=1
          Length = 616

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 442 GTPTPYALHSPKLSHKSFSEKKPFSHISDPWALRS 338
           G P P+ LH+ + +H  F ++ P    ++PW L+S
Sbjct: 232 GLPKPHLLHAARKAH-HFFKRNPHPDAANPWQLKS 265


>sp|P46238|GUXC_FUSOX Putative exoglucanase type C OS=Fusarium
           oxysporum PE=2 SV=1
          Length = 514

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 89  SSWVWIKATNGASSHYLRR*WPAITAASPLQTEGKFCAEHAFCFGLKSIFSGCHGCTT 262
           ++W W   T+G+++ Y    W      + + T+GK CAE     G  + +SG +G T+
Sbjct: 52  ANWRWTHQTSGSTNCYTGNKWD-----TSICTDGKTCAEKCCLDG--ADYSGTYGITS 102
tr_hit_id A7PGX7
Definition tr|A7PGX7|A7PGX7_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera
Align length 94
Score (bit) 105.0
E-value 2.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953740|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_J08, 5'
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PGX7|A7PGX7_VITVI Chromosome chr17 scaffold_16, whole genom...   105   2e-21
tr|A9P9W8|A9P9W8_POPTR Putative uncharacterized protein OS=Popul...   103   6e-21
tr|Q6YSZ2|Q6YSZ2_ORYSJ Os07g0246600 protein OS=Oryza sativa subs...   102   1e-20
tr|Q9ZU41|Q9ZU41_ARATH Predicted by genscan and genefinder (Puta...   102   2e-20
tr|Q940I8|Q940I8_ARATH Putative uncharacterized protein Z97340.1...   102   2e-20
tr|Q3E6X2|Q3E6X2_ARATH Uncharacterized protein At2g01260.2 OS=Ar...   102   2e-20
tr|Q2V4B5|Q2V4B5_ARATH Uncharacterized protein At2g01260.3 OS=Ar...   102   2e-20
tr|Q850Z6|Q850Z6_ORYSJ Putative uncharacterized protein OSJNBb00...   100   9e-20
tr|Q7Y149|Q7Y149_ORYSJ Putative uncharacterized protein OSJNBa00...   100   9e-20
tr|Q10B37|Q10B37_ORYSJ Os03g0831300 protein OS=Oryza sativa subs...   100   9e-20
tr|B8AMR1|B8AMR1_ORYSI Putative uncharacterized protein OS=Oryza...   100   9e-20
tr|A7Q8K6|A7Q8K6_VITVI Chromosome chr5 scaffold_64, whole genome...    98   2e-19
tr|A7P3D3|A7P3D3_VITVI Chromosome chr1 scaffold_5, whole genome ...    97   4e-19
tr|A5BKM4|A5BKM4_VITVI Putative uncharacterized protein OS=Vitis...    97   4e-19
tr|A9RSK0|A9RSK0_PHYPA Predicted protein OS=Physcomitrella paten...    96   2e-18
tr|A5AX49|A5AX49_VITVI Putative uncharacterized protein OS=Vitis...    95   2e-18
tr|Q9M9Q2|Q9M9Q2_ARATH T15D22.8 (Putative uncharacterized protei...    94   4e-18
tr|B4FEX2|B4FEX2_MAIZE Putative uncharacterized protein OS=Zea m...    94   5e-18
tr|A9TPL8|A9TPL8_PHYPA Predicted protein OS=Physcomitrella paten...    93   8e-18
tr|A9RZ13|A9RZ13_PHYPA Predicted protein OS=Physcomitrella paten...    93   8e-18
tr|A7Q0H9|A7Q0H9_VITVI Chromosome chr7 scaffold_42, whole genome...    91   4e-17
tr|Q5QND0|Q5QND0_ORYSJ cDNA clone:J023025D18, full insert sequen...    91   5e-17
tr|A2ZTQ9|A2ZTQ9_ORYSJ Putative uncharacterized protein OS=Oryza...    91   5e-17
tr|A2WQM9|A2WQM9_ORYSI Putative uncharacterized protein OS=Oryza...    91   5e-17
tr|A9RPR0|A9RPR0_PHYPA Predicted protein OS=Physcomitrella paten...    90   7e-17
tr|A7PXD4|A7PXD4_VITVI Chromosome chr12 scaffold_36, whole genom...    90   9e-17
tr|Q9ZT70|Q9ZT70_ARATH Putative uncharacterized protein AT4g0342...    86   2e-15
tr|Q9M0J2|Q9M0J2_ARATH Putative uncharacterized protein AT4g2815...    86   2e-15
tr|Q8S9K9|Q8S9K9_ARATH AT4g03420/F9H3_4 OS=Arabidopsis thaliana ...    86   2e-15
tr|Q8GUN3|Q8GUN3_ARATH Putative uncharacterized protein At4g2815...    86   2e-15

>tr|A7PGX7|A7PGX7_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017727001
           PE=4 SV=1
          Length = 370

 Score =  105 bits (262), Expect = 2e-21
 Identities = 52/94 (55%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
 Frame = +3

Query: 237 SVGAMDAPPST--SNLQRFLTHTTPHVTTQFLSKTQLRNAQGSEMCEKGFFSLNDLWESF 410
           S+    + PST  SNL RFL  TTP V  Q+ SKT +R  +  ++  + +F+L DLWESF
Sbjct: 67  SIAKPSSEPSTAPSNLDRFLESTTPSVPAQYFSKTTMRGLRTCDIEFQHYFTLGDLWESF 126

Query: 411 GEWSAYGVGVPILLDHKETVMQYYVPYLSGIQLY 512
            EWSAYG GVP++LD  + V+QYYVPYLSGIQLY
Sbjct: 127 MEWSAYGAGVPLVLDGSDPVVQYYVPYLSGIQLY 160


>tr|A9P9W8|A9P9W8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 396

 Score =  103 bits (257), Expect = 6e-21
 Identities = 52/97 (53%), Positives = 66/97 (68%)
 Frame = +3

Query: 258 PPSTSNLQRFLTHTTPHVTTQFLSKTQLRNAQGSEMCEKGFFSLNDLWESFGEWSAYGVG 437
           P S SNL RFL   TP V  Q+ SKT +R  +  ++  + +F L DLWESF EWSAYG G
Sbjct: 65  PASESNLDRFLESITPSVPAQYPSKTTMRGWRTCDVEFEPYFVLGDLWESFKEWSAYGAG 124

Query: 438 VPILLDHKETVMQYYVPYLSGIQLYAHTVNTQIPKSR 548
           VP++L+  + V+QYYVPYLSGIQ+YA +     PKSR
Sbjct: 125 VPLILNDSDCVVQYYVPYLSGIQIYADSTKMP-PKSR 160


>tr|Q6YSZ2|Q6YSZ2_ORYSJ Os07g0246600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0003K21.26 PE=4 SV=1
          Length = 455

 Score =  102 bits (255), Expect = 1e-20
 Identities = 60/134 (44%), Positives = 76/134 (56%), Gaps = 15/134 (11%)
 Frame = +3

Query: 159 SQQPRHYRRKANFVQSMPSALGSNPSSVGAMDAPPSTS--------------NLQRFLTH 296
           ++Q    RR    VQS PS +   PSS      P + S              NL+RFL+ 
Sbjct: 100 ARQKEVERRVDAVVQSKPS-VSPLPSSADVKRPPAAESAPEPARAAEEEAAGNLERFLSS 158

Query: 297 TTPHVTTQFLSKTQLRN-AQGSEMCEKGFFSLNDLWESFGEWSAYGVGVPILLDHKETVM 473
           TTP V  Q+L KT +R    G  M    +F L DLWE+F EWS YG GVP++L+ K++V+
Sbjct: 159 TTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVVLNGKDSVI 218

Query: 474 QYYVPYLSGIQLYA 515
           QYYVPYLS IQLYA
Sbjct: 219 QYYVPYLSAIQLYA 232


>tr|Q9ZU41|Q9ZU41_ARATH Predicted by genscan and genefinder
           (Putative uncharacterized protein At2g01260) (At2g01260)
           OS=Arabidopsis thaliana GN=At2g01260 PE=2 SV=2
          Length = 369

 Score =  102 bits (253), Expect = 2e-20
 Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
 Frame = +3

Query: 153 RQSQQPRHYRRKANFVQSMPSALGSNPSSVGAMDAPPSTSNLQRFLTHTTPHVTTQFLSK 332
           R +Q+    RR  + V ++PS+  S P       +  S+SNL RFL   TP V  QFLSK
Sbjct: 26  RANQRIDQLRRAQSDVSNVPSSAPS-PHKQQLEPSDLSSSNLDRFLESVTPSVPAQFLSK 84

Query: 333 TQLRNAQGSEMCEK--GFFSLNDLWESFGEWSAYGVGVPILL-DHKETVMQYYVPYLSGI 503
           T LR  +  +   K   +F L D+W+SF EWSAYG GVP++L ++K+ V+QYYVP LS I
Sbjct: 85  TLLRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGVPLVLNNNKDRVIQYYVPSLSAI 144

Query: 504 QLYAHT 521
           Q+YAH+
Sbjct: 145 QIYAHS 150


>tr|Q940I8|Q940I8_ARATH Putative uncharacterized protein Z97340.18
           (At4g16100) OS=Arabidopsis thaliana GN=Z97340.18 PE=2
           SV=1
          Length = 394

 Score =  102 bits (253), Expect = 2e-20
 Identities = 54/103 (52%), Positives = 71/103 (68%)
 Frame = +3

Query: 204 SMPSALGSNPSSVGAMDAPPSTSNLQRFLTHTTPHVTTQFLSKTQLRNAQGSEMCEKGFF 383
           S+PS + S  ++ G      ++SNL RFL  TTP V+TQ L  T  +  +  E   + +F
Sbjct: 70  SVPSRVSSTTTTTGT-----TSSNLGRFLDCTTPIVSTQHLPLTSSKGWRTREPEYRPYF 124

Query: 384 SLNDLWESFGEWSAYGVGVPILLDHKETVMQYYVPYLSGIQLY 512
            LNDLW+SF EWSAYGVGVP+LL+  ++V+QYYVPYLSGIQLY
Sbjct: 125 LLNDLWDSFEEWSAYGVGVPLLLNGIDSVVQYYVPYLSGIQLY 167


>tr|Q3E6X2|Q3E6X2_ARATH Uncharacterized protein At2g01260.2
           OS=Arabidopsis thaliana GN=At2g01260 PE=4 SV=1
          Length = 324

 Score =  102 bits (253), Expect = 2e-20
 Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
 Frame = +3

Query: 153 RQSQQPRHYRRKANFVQSMPSALGSNPSSVGAMDAPPSTSNLQRFLTHTTPHVTTQFLSK 332
           R +Q+    RR  + V ++PS+  S P       +  S+SNL RFL   TP V  QFLSK
Sbjct: 26  RANQRIDQLRRAQSDVSNVPSSAPS-PHKQQLEPSDLSSSNLDRFLESVTPSVPAQFLSK 84

Query: 333 TQLRNAQGSEMCEK--GFFSLNDLWESFGEWSAYGVGVPILL-DHKETVMQYYVPYLSGI 503
           T LR  +  +   K   +F L D+W+SF EWSAYG GVP++L ++K+ V+QYYVP LS I
Sbjct: 85  TLLRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGVPLVLNNNKDRVIQYYVPSLSAI 144

Query: 504 QLYAHT 521
           Q+YAH+
Sbjct: 145 QIYAHS 150


>tr|Q2V4B5|Q2V4B5_ARATH Uncharacterized protein At2g01260.3
           OS=Arabidopsis thaliana GN=At2g01260 PE=4 SV=1
          Length = 267

 Score =  102 bits (253), Expect = 2e-20
 Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
 Frame = +3

Query: 153 RQSQQPRHYRRKANFVQSMPSALGSNPSSVGAMDAPPSTSNLQRFLTHTTPHVTTQFLSK 332
           R +Q+    RR  + V ++PS+  S P       +  S+SNL RFL   TP V  QFLSK
Sbjct: 26  RANQRIDQLRRAQSDVSNVPSSAPS-PHKQQLEPSDLSSSNLDRFLESVTPSVPAQFLSK 84

Query: 333 TQLRNAQGSEMCEK--GFFSLNDLWESFGEWSAYGVGVPILL-DHKETVMQYYVPYLSGI 503
           T LR  +  +   K   +F L D+W+SF EWSAYG GVP++L ++K+ V+QYYVP LS I
Sbjct: 85  TLLRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGVPLVLNNNKDRVIQYYVPSLSAI 144

Query: 504 QLYAHT 521
           Q+YAH+
Sbjct: 145 QIYAHS 150


>tr|Q850Z6|Q850Z6_ORYSJ Putative uncharacterized protein
           OSJNBb0027B08.9 (Putative uncharacterized protein)
           OS=Oryza sativa subsp. japonica GN=OSJNBb0027B08.9 PE=4
           SV=1
          Length = 433

 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 54/109 (49%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
 Frame = +3

Query: 204 SMPSALGSNPSSVGAMD----APPSTSNLQRFLTHTTPHVTTQFLSKTQLRNAQGSEMCE 371
           S PS   +  ++  A D    A   + NL+RFLT TTP V  Q+L KT L+  +  +   
Sbjct: 91  SKPSVASTATATTTAADVNVTAVEESGNLERFLTSTTPSVPFQYLPKTSLKMWRTGDCTN 150

Query: 372 KG-FFSLNDLWESFGEWSAYGVGVPILLDHKETVMQYYVPYLSGIQLYA 515
              +F L DLWESF EWSAYG GVP+LL+  ++V QYYVPYLS IQLYA
Sbjct: 151 TSPYFCLEDLWESFREWSAYGAGVPLLLNGSDSVTQYYVPYLSAIQLYA 199


>tr|Q7Y149|Q7Y149_ORYSJ Putative uncharacterized protein
           OSJNBa0078D06.19 (Expressed protein) OS=Oryza sativa
           subsp. japonica GN=OSJNBa0078D06.19 PE=4 SV=1
          Length = 427

 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 54/109 (49%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
 Frame = +3

Query: 204 SMPSALGSNPSSVGAMD----APPSTSNLQRFLTHTTPHVTTQFLSKTQLRNAQGSEMCE 371
           S PS   +  ++  A D    A   + NL+RFLT TTP V  Q+L KT L+  +  +   
Sbjct: 91  SKPSVASTATATTTAADVNVTAVEESGNLERFLTSTTPSVPFQYLPKTSLKMWRTGDCTN 150

Query: 372 KG-FFSLNDLWESFGEWSAYGVGVPILLDHKETVMQYYVPYLSGIQLYA 515
              +F L DLWESF EWSAYG GVP+LL+  ++V QYYVPYLS IQLYA
Sbjct: 151 TSPYFCLEDLWESFREWSAYGAGVPLLLNGSDSVTQYYVPYLSAIQLYA 199


>tr|Q10B37|Q10B37_ORYSJ Os03g0831300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0831300 PE=4 SV=1
          Length = 312

 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 54/109 (49%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
 Frame = +3

Query: 204 SMPSALGSNPSSVGAMD----APPSTSNLQRFLTHTTPHVTTQFLSKTQLRNAQGSEMCE 371
           S PS   +  ++  A D    A   + NL+RFLT TTP V  Q+L KT L+  +  +   
Sbjct: 91  SKPSVASTATATTTAADVNVTAVEESGNLERFLTSTTPSVPFQYLPKTSLKMWRTGDCTN 150

Query: 372 KG-FFSLNDLWESFGEWSAYGVGVPILLDHKETVMQYYVPYLSGIQLYA 515
              +F L DLWESF EWSAYG GVP+LL+  ++V QYYVPYLS IQLYA
Sbjct: 151 TSPYFCLEDLWESFREWSAYGAGVPLLLNGSDSVTQYYVPYLSAIQLYA 199