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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953727
Clone id TST39A01NGRL0018_I19
Library
Length 615
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_I19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGATGGGTGATCCTGATGTAGAGTGGAGGAGAAGTATCGCCCGCGCAGGGCTGCACACAT
TTACGAGCGCGCAAGAAACGTCCGCAAGCAGGTAGGTAGACAAACAGATACAGACACAGA
CATATTCGCACATGGAGACTGGACTCTTGGAGAACTGGCTTCACAGAGCCGCTTTTTCAT
TCTCCAATTCTCCATCAGGTGTTTTAAGGTCTTCTTCACCTTCTGCGCAACAGATTGCCC
AGGCTTGGTCCCGAGTTCGTGAGTGCGTGCAGGGTGGGCTTTTCCTGCCACAGCACTCTG
CTGCCCTCGATCTTCTGAAAGAGTACGGAAACACAATCCATGTGGCCGAGTCTCAGGCTA
GGGTCTTAACGTCAATCTTATCTTCTATCACGTTCCGTCCTGATGTTGAGGAGAATGCTG
CAGCACATGCGCGAAGCTCTGCTGCATCGCTTTTGAGCATATGGCTTCGAAGGGGGTTGC
ACCTTCTGGAAGGCATGGCTCAAAGGCATCATCATCCAGAATCAAGGAAACAATTGAAGC
TGTGGTAGGAAGTGCAATCAAGGCATTAGAGAGCTCTACATTGGACAATGGCTTTGTGAG
TGAAGCTATCCTGCT
■■Homology search results ■■ -
sp_hit_id P03517
Definition sp|P03517|VGLM_PTPV Envelope glycoprotein OS=Punta toro phlebovirus
Align length 40
Score (bit) 34.3
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953727|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_I19, 5'
         (615 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03517|VGLM_PTPV Envelope glycoprotein OS=Punta toro phlebovi...    34   0.52 
sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1     32   3.4  
sp|P35556|FBN2_HUMAN Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=2     32   3.4  
sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4 OS=M...    31   5.8  
sp|Q96AN5|TM143_HUMAN Transmembrane protein 143 OS=Homo sapiens ...    30   9.9  

>sp|P03517|VGLM_PTPV Envelope glycoprotein OS=Punta toro phlebovirus
            GN=M PE=3 SV=1
          Length = 1313

 Score = 34.3 bits (77), Expect = 0.52
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 470  KGVAPSGRHGSKASSSRIKETIEAVVGSAIKALESSTLDN 589
            KG  P  R+G   +S++ K+T++A    AIKAL S  LD+
Sbjct: 1097 KGSLPQTRNGQTFTSTKDKKTVQAFTNGAIKALLSINLDD 1136


>sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1
          Length = 2907

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
 Frame = -3

Query: 298  ECCGRKSPPCTHSRTRDQAWAICCAEGEEDLKTPDGEL---ENEKAAL*SQFSKSPVSMC 128
            EC       C + R  ++  +  C   E    TPDG+     NE  AL    S       
Sbjct: 1969 ECSSFFGQVCRNGRCFNEIGSFKCLCNEGYELTPDGKNCIDTNECVALPGSCSPGTCQNL 2028

Query: 127  EYVCVCICLSTYLLADVSCALVNVCSPARAILLLHSTSGSP 5
            E    CIC   Y +   +C  +N C     I L  S + +P
Sbjct: 2029 EGSFRCICPPGYEVRSENCIDINECDEDPNICLFGSCTNTP 2069


>sp|P35556|FBN2_HUMAN Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=2
          Length = 2911

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
 Frame = -3

Query: 298  ECCGRKSPPCTHSRTRDQAWAICCAEGEEDLKTPDGEL---ENEKAAL*SQFSKSPVSMC 128
            EC       C + R  ++  +  C   E    TPDG+     NE  AL    S       
Sbjct: 1975 ECSSFFGQVCRNGRCFNEIGSFKCLCNEGYELTPDGKNCIDTNECVALPGSCSPGTCQNL 2034

Query: 127  EYVCVCICLSTYLLADVSCALVNVCSPARAILLLHSTSGSP 5
            E    CIC   Y +   +C  +N C     I L  S + +P
Sbjct: 2035 EGSFRCICPPGYEVKSENCIDINECDEDPNICLFGSCTNTP 2075


>sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4 OS=Mus
           musculus GN=Phxr4 PE=2 SV=1
          Length = 95

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 133 MCEYVC---VCICLSTYLLADVSCALVNVCSPA 44
           +C YVC   +C+C S  +   V C  V+VC+ A
Sbjct: 2   LCIYVCGVCLCVCFSVCMCVHVLCVYVHVCTYA 34


>sp|Q96AN5|TM143_HUMAN Transmembrane protein 143 OS=Homo sapiens
           GN=TMEM143 PE=2 SV=1
          Length = 459

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
 Frame = -1

Query: 342 HGLCFRTLSEDRGQQSAVAGKAHPARTHE-------LGTKPG--QSVAQKVKKTLKHLME 190
           H L +R+ S +    SA+A +A    T E       L  +PG  Q   ++  + L+  +E
Sbjct: 340 HMLYYRSTSNNSELLSALALRAQDEHTKEALLAHSFLARRPGGTQGSPEETSRWLRSEVE 399

Query: 189 NWRMKKRLCEAS 154
           NW + K  CE +
Sbjct: 400 NWLLAKSGCEVT 411
tr_hit_id A9S1B7
Definition tr|A9S1B7|A9S1B7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 46
Score (bit) 39.3
E-value 0.18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953727|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_I19, 5'
         (615 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S1B7|A9S1B7_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.18 
tr|Q4RLJ7|Q4RLJ7_TETNG Chromosome 10 SCAF15019, whole genome sho...    37   0.70 
tr|B7BF94|B7BF94_9PORP Putative uncharacterized protein OS=Parab...    37   0.70 
tr|Q8NH31|Q8NH31_HUMAN Seven transmembrane helix receptor OS=Hom...    35   4.5  
tr|Q1WDN4|Q1WDN4_PTPV M polyprotein OS=Punta toro phlebovirus PE...    34   5.9  
tr|A7QKA5|A7QKA5_VITVI Chromosome chr2 scaffold_112, whole genom...    34   5.9  
tr|Q4RKF1|Q4RKF1_TETNG Chromosome 21 SCAF15029, whole genome sho...    34   6.0  
tr|B8ALD8|B8ALD8_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.7  

>tr|A9S1B7|A9S1B7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162295 PE=4 SV=1
          Length = 922

 Score = 39.3 bits (90), Expect = 0.18
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +3

Query: 252 RVRECVQGGLFLPQHSAALDLLKEYGNTIHVAESQARVLTSILSSI 389
           ++R CVQ GL    H+ AL L+  +  ++HVA+ Q ++L  +L+ +
Sbjct: 44  KIRACVQQGLLDSSHAEALSLIDLHHKSVHVADPQVKLLLGLLTKV 89


>tr|Q4RLJ7|Q4RLJ7_TETNG Chromosome 10 SCAF15019, whole genome shotgun
            sequence. (Fragment) OS=Tetraodon nigroviridis
            GN=GSTENG00032458001 PE=4 SV=1
          Length = 1434

 Score = 37.4 bits (85), Expect = 0.70
 Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
 Frame = -3

Query: 346  ATWIVFPYSFRRSRAAEC-CGRKSPPCTHSRTRDQAWAICC----------------AEG 218
            ATW + P S R S A+    GR SP    S  RD +W +                  AE 
Sbjct: 1155 ATWQLEPPSPRESAASSAESGRASP----SLRRDGSWFMQLLHTDTKRIEGWCKEMEAEA 1210

Query: 217  EEDLKTPDGELENE-----KAAL*SQFSKSPVSMCEYVCVCICLSTYLLADVSCALVNVC 53
            EE+    + E E E        L    + S +S+C  VCVC+C+   LL   S    + C
Sbjct: 1211 EENDLPEESEWEREGYTCQPGRLNEGVAFSTLSVCVCVCVCVCVCVSLLVCFSSRQNSEC 1270

Query: 52   SPARA 38
            S  R+
Sbjct: 1271 SGKRS 1275


>tr|B7BF94|B7BF94_9PORP Putative uncharacterized protein
           OS=Parabacteroides johnsonii DSM 18315
           GN=PRABACTJOHN_03723 PE=4 SV=1
          Length = 504

 Score = 37.4 bits (85), Expect = 0.70
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
 Frame = +2

Query: 47  RAAHIYERARNV----RKQVGRQTDT-----DTDIFAHGDWTLGELASQSR-FFILQFSI 196
           R   + +R R V    R+  GRQT T     DT++ AH +WT+  + +  R  F +++S 
Sbjct: 65  RLFEVVQRIREVNAQRRRAAGRQTATGRSVSDTELKAHPEWTVDYIVAPPRMMFYIEYST 124

Query: 197 RCFKVFFTFCATD 235
           R ++++  + A +
Sbjct: 125 RIYQIYLKYVAPE 137


>tr|Q8NH31|Q8NH31_HUMAN Seven transmembrane helix receptor OS=Homo
           sapiens PE=4 SV=1
          Length = 346

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 139 VSMCEYVCVCICLSTYLLADVSCALVNVCSPARAILLL 26
           V +C YVC+C+C+S  L   V CA +++C   R  + L
Sbjct: 115 VYLCVYVCICVCVSVSLCVSV-CACLSLCVCIRVSVCL 151


>tr|Q1WDN4|Q1WDN4_PTPV M polyprotein OS=Punta toro phlebovirus PE=4
            SV=1
          Length = 1314

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 470  KGVAPSGRHGSKASSSRIKETIEAVVGSAIKALESSTLDN 589
            KG  P  R+G   +S++ K+T++A    AIKAL S  LD+
Sbjct: 1098 KGSLPQTRNGQTFTSTKDKKTVQAFTNGAIKALLSINLDD 1137


>tr|A7QKA5|A7QKA5_VITVI Chromosome chr2 scaffold_112, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001041001
           PE=4 SV=1
          Length = 786

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +3

Query: 135 ETGLLENWLHRAAFSFXXXXXXXXXXXXXXXXXXXXXXXRVRECVQGGLFLPQHSAALDL 314
           +T  LE WL   + S                         +R+ +Q   F P H  +L  
Sbjct: 6   QTPFLEEWLRSHSGSGSSISISSGRPSSVSARAIIQAWTELRDSLQYQSFHPNHFQSLRT 65

Query: 315 LKEYGNTIHVAESQARVLTSILSS 386
           L +  ++++VA+ QAR+L SILSS
Sbjct: 66  LFDSQSSLYVADPQARLLLSILSS 89


>tr|Q4RKF1|Q4RKF1_TETNG Chromosome 21 SCAF15029, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00032984001 PE=4 SV=1
          Length = 1207

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 534 IVSLILDDDAFEPCLPEGATPFEAICSKAMQQSFAHVLQH--SPQHQDGT 391
           +++ ILD DA   C PEG TP    CS+  Q   A +L H  SP  +D T
Sbjct: 721 LLASILDVDA---CSPEGRTPLSLSCSRGHQDCVALLLHHGASPMTRDYT 767


>tr|B8ALD8|B8ALD8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09657 PE=4 SV=1
          Length = 687

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
 Frame = -3

Query: 319 FRRSRAAECCGRKSPPCTHSRTRDQAWAICCAEGEEDLKTPDGELENEKAAL*SQFSKSP 140
           F +     C  ++S  C H      AW + C +G   + +   ++      L  Q    P
Sbjct: 133 FEKINTTTCWAKRSVDCVHGFLIYYAWTVSCGQGTAVVISTGRDIPRSTLRLYPQRYTRP 192

Query: 139 VSMCEYVCV--CICLSTYLLADVSCALVNVCSPARAILL 29
             + E + +  C C S  L      AL+ V   A  ++L
Sbjct: 193 GQLKEGIMIVGCFCFSLVLFGWRFMALIGVVPMAMPVVL 231