NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953677
Clone id TST39A01NGRL0018_G14
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_G14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AAACATTTAATTGCTGTCCTAAACCCCTAGTGCAAAAATTCTTCGACCGTAATCGCCCGT
ATCAGTAAGCTTTCAGCAGAGACGTAAGAGTTACAAGCTCCATGAAGAGCTTGATATGTA
GCGGTTCTTGAAGGATAGTTCTTATCCATCCGCACAGCAATGGTGCTTCAATTAGCTCTA
GGAGCATCCAAGCTTCTTCTCGTTCTGGGTGCTGGTGTAGCAGGTTCCATTCTTGTGCAA
AATGGAAATCTTTCTGACTTTGTCAATGATACATATAAGGTACTCGTCAAACACTTGAAA
CATGAAAGTGGGCCAAGTCAAAAAAGTTCGGTTGACCCCAATCTTTTAGCACAGCTTAGC
AGACTGAAACAGGAGTTGAGCAACTTATCATCAGAAAGAGCTTCTGTTACTATTGTAACT
AGCAACTCAAGGTCTTCTGGTCTTGTCGTCTGTGTTGGGGTCCCGGCATTGGTTGTTAGT
GCTGCAGGGTATGGCTATATGCGTTGGCGGGGCTTATCTTTCT
■■Homology search results ■■ -
sp_hit_id Q568Y2
Definition sp|Q568Y2|DPH2_RAT Diphthamide biosynthesis protein 2 OS=Rattus norvegicus
Align length 86
Score (bit) 31.2
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953677|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_G14, 5'
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q568Y2|DPH2_RAT Diphthamide biosynthesis protein 2 OS=Rattus ...    31   3.1  
sp|Q9CR25|DPH2_MOUSE Diphthamide biosynthesis protein 2 OS=Mus m...    31   4.0  
sp|Q18221|SET2_CAEEL Protein set-2 OS=Caenorhabditis elegans GN=...    30   7.0  
sp|Q6DIA7|CS057_MOUSE Uncharacterized protein C19orf57 homolog O...    30   9.0  

>sp|Q568Y2|DPH2_RAT Diphthamide biosynthesis protein 2 OS=Rattus
           norvegicus GN=Dph2 PE=2 SV=1
          Length = 489

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
 Frame = -3

Query: 494 PYPAALTTNAGTPTQTTRPEDLELLVTI--VTEALSD-----------DKLLNSCFSLLS 354
           P  AAL   AG P Q T PEDL+ +  +  VT  + D           D+LL    ++ +
Sbjct: 8   PAEAALQREAGVPGQFTPPEDLDRVYELERVTRFICDLGCQRVALQFPDQLLGDAGAVAA 67

Query: 353 CAKRLGSTELF*LGPLSCFKCLTSTL 276
             + +  +++F LG  +   C    L
Sbjct: 68  RLEEVTGSKMFILGDTAYGSCCVDVL 93


>sp|Q9CR25|DPH2_MOUSE Diphthamide biosynthesis protein 2 OS=Mus
           musculus GN=Dph2 PE=1 SV=1
          Length = 489

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
 Frame = -3

Query: 494 PYPAALTTNAGTPTQTTRPEDLELLVTI--VTEALSD-----------DKLLNSCFSLLS 354
           P  AAL   AG P Q T PEDL+ +  +  VT+ + D           D+LL    ++ +
Sbjct: 8   PAEAALQREAGVPGQFTPPEDLDRVYELERVTKFVCDLGCQRVTLQFPDQLLGDAGAVAA 67

Query: 353 CAKRLGSTELF*LGPLSCFKCLTSTL 276
             + +   ++F LG  +   C    L
Sbjct: 68  RLEEVTGAKMFILGDTAYGSCCVDVL 93


>sp|Q18221|SET2_CAEEL Protein set-2 OS=Caenorhabditis elegans
           GN=set-2 PE=2 SV=2
          Length = 1507

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 241 NGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPNLLAQLSRLKQELSNLSSERAS 405
           NG++  +  +TYK+  + +K+E G  +   V       + R K +L N+SSE AS
Sbjct: 409 NGDVVKY--ETYKMEKRKIKYEGGNKKYEQVHIKERTAVIRGKNQLENVSSESAS 461


>sp|Q6DIA7|CS057_MOUSE Uncharacterized protein C19orf57 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 600

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 479 LTTNAGTPTQTTRPEDLELLVTIVTEALSDDKLLNSCFSLLSCAKRLGSTE 327
           L++ A  P+ T+ P D  L+ T++TEA  D  +L    S    AK LGS +
Sbjct: 260 LSSTAAAPSSTS-PADASLMDTVITEASLDPSVLQQ--SAPQVAKLLGSLD 307
tr_hit_id A9TLA3
Definition tr|A9TLA3|A9TLA3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 94
Score (bit) 68.9
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953677|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_G14, 5'
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TLA3|A9TLA3_PHYPA Predicted protein (Fragment) OS=Physcomit...    69   1e-10
tr|A9NXI1|A9NXI1_PICSI Putative uncharacterized protein OS=Picea...    67   5e-10
tr|A9S641|A9S641_PHYPA Predicted protein (Fragment) OS=Physcomit...    62   2e-08
tr|A9SWM7|A9SWM7_PHYPA Predicted protein OS=Physcomitrella paten...    57   7e-07
tr|Q9C5M5|Q9C5M5_ARATH Putative uncharacterized protein At1g2700...    47   4e-04
tr|Q8LF07|Q8LF07_ARATH Putative uncharacterized protein OS=Arabi...    47   4e-04
tr|Q9LFY5|Q9LFY5_ARATH T7N9.6 OS=Arabidopsis thaliana PE=4 SV=1        47   6e-04
tr|A7Q2S6|A7Q2S6_VITVI Chromosome chr1 scaffold_46, whole genome...    47   8e-04
tr|A9NX71|A9NX71_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|Q65WY7|Q65WY7_ORYSJ Os05g0182700 protein OS=Oryza sativa subs...    46   0.001
tr|A2Y139|A2Y139_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|Q9M3Z4|Q9M3Z4_CICAR Putative uncharacterized protein OS=Cicer...    45   0.002
tr|A7QP30|A7QP30_VITVI Chromosome chr1 scaffold_136, whole genom...    45   0.002
tr|Q0GPG4|Q0GPG4_SOYBN BZIP transcription factor bZIP109 OS=Glyc...    44   0.004
tr|B7FIP3|B7FIP3_MEDTR Putative uncharacterized protein OS=Medic...    44   0.004
tr|Q1W3A7|Q1W3A7_STRAF Putative uncharacterized protein (Fragmen...    44   0.005
tr|B8LPN5|B8LPN5_PICSI Putative uncharacterized protein OS=Picea...    44   0.005
tr|B8LKN1|B8LKN1_PICSI Putative uncharacterized protein OS=Picea...    44   0.005
tr|Q8GYC5|Q8GYC5_ARATH Putative uncharacterized protein (At1g242...    44   0.006
tr|Q2V4L4|Q2V4L4_ARATH Uncharacterized protein At1g24267.2 OS=Ar...    44   0.006
tr|B6TCM5|B6TCM5_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.006
tr|Q0GPJ1|Q0GPJ1_SOYBN BZIP transcription factor bZIP108 (Fragme...    42   0.019
tr|B6TRT4|B6TRT4_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.019
tr|B8BCU2|B8BCU2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.071
tr|B7E6Z9|B7E6Z9_ORYSJ cDNA clone:001-040-F09, full insert seque...    40   0.071
tr|A3C018|A3C018_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.071
tr|Q0GPJ6|Q0GPJ6_SOYBN BZIP transcription factor bZIP55 (Fragmen...    39   0.21 
tr|Q0GPH8|Q0GPH8_SOYBN BZIP transcription factor bZIP56 OS=Glyci...    39   0.21 
tr|B4FC35|B4FC35_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.35 
tr|Q655L6|Q655L6_ORYSJ Putative uncharacterized protein P0672D08...    37   0.46 

>tr|A9TLA3|A9TLA3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46707 PE=4 SV=1
          Length = 229

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 39/94 (41%), Positives = 46/94 (48%)
 Frame = +1

Query: 241 NGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPNLLAQLSRLKQELSNLSSERASVTIVT 420
           N  L+DFV D  KVL KHLK           D  L  Q+ +L +EL NL+S   +VT+V 
Sbjct: 24  NSKLADFVGDLSKVLSKHLKENGQKGDGVGKDAALSLQVRKLTEELRNLASSSGTVTVVQ 83

Query: 421 SNSRSSXXXXXXXXXXXXXSAAGYGYMRWRGLSF 522
           S S S               AAGY YM WRG SF
Sbjct: 84  SGSGSGTSFTSFILPAAVVGAAGYSYMWWRGFSF 117


>tr|A9NXI1|A9NXI1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 376

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 36/92 (39%), Positives = 56/92 (60%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPNLLAQLSRLKQELSNLSSERASVTIV 417
           Q   +SDF +  +KV++KHLK +    +++S D +L+AQ++ L+QEL  L+S R S+T+V
Sbjct: 26  QFSKVSDFFSGAFKVILKHLKEDESQLKEASNDTSLMAQVNSLRQELKMLASSR-SITVV 84

Query: 418 TSNSRSSXXXXXXXXXXXXXSAAGYGYMRWRG 513
           T NS+S                AGYGY+ W+G
Sbjct: 85  TGNSQSG--TTTYAVPVIVIGVAGYGYIWWKG 114


>tr|A9S641|A9S641_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46685 PE=4 SV=1
          Length = 230

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKH-ESGPSQKSSVDPNLLAQLSRLKQELSNLSSERASVTI 414
           +N  L DF+ D  +VL KH K  E+G  + S  D  L  Q+ +L QEL NL+S   +VT+
Sbjct: 25  KNNKLGDFLGDLSRVLSKHFKEGENGDGRAS--DAALHLQVRKLTQELRNLASSSGTVTV 82

Query: 415 VTSNSRSSXXXXXXXXXXXXXSAAGYGYMRWRGLSF 522
           V + S S               AA YGY+ W+G SF
Sbjct: 83  VQTGSGSGISITSFILPAAMVGAASYGYIWWKGFSF 118


>tr|A9SWM7|A9SWM7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_136490 PE=4 SV=1
          Length = 266

 Score = 56.6 bits (135), Expect = 7e-07
 Identities = 33/95 (34%), Positives = 50/95 (52%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPNLLAQLSRLKQELSNLSSERASVTIV 417
           +N  +++ +ND  +V+ KHL  E G   ++S    L AQ+ RL QEL  L+S   +VT+V
Sbjct: 21  RNPKVAELLNDLSQVVTKHLSEEDGSGGENSA---LAAQVQRLTQELRYLASSPRNVTVV 77

Query: 418 TSNSRSSXXXXXXXXXXXXXSAAGYGYMRWRGLSF 522
             N  SS                GYGY++W+GL +
Sbjct: 78  --NGGSSTNYSSLILPAATIGIVGYGYIKWKGLKW 110


>tr|Q9C5M5|Q9C5M5_ARATH Putative uncharacterized protein At1g27000
           (At1g27000/T7N9_6) OS=Arabidopsis thaliana GN=At1g27000
           PE=2 SV=1
          Length = 304

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 30/95 (31%), Positives = 42/95 (44%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPNLLAQLSRLKQELSNLSSERASVTIV 417
           +NG LSD + +   ++    K   G    S V   + AQ+ RL  E+  L+S++    I 
Sbjct: 27  KNGKLSDLLGELQSLVKGMEKSGEGSEGDSDVSDAIAAQVRRLAMEIRQLASQQ---HIT 83

Query: 418 TSNSRSSXXXXXXXXXXXXXSAAGYGYMRWRGLSF 522
             N  S               A GYGYM W+GLSF
Sbjct: 84  VMNGVSGANLQALAVPAAALGALGYGYMWWKGLSF 118


>tr|Q8LF07|Q8LF07_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 304

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 30/95 (31%), Positives = 42/95 (44%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPNLLAQLSRLKQELSNLSSERASVTIV 417
           +NG LSD + +   ++    K   G    S V   + AQ+ RL  E+  L+S++    I 
Sbjct: 27  KNGKLSDLLGELQSLVKGMEKSGEGSEGDSDVSDAIAAQVRRLAMEIRQLASQQ---HIT 83

Query: 418 TSNSRSSXXXXXXXXXXXXXSAAGYGYMRWRGLSF 522
             N  S               A GYGYM W+GLSF
Sbjct: 84  VMNGVSGANLQALAVPAAALGALGYGYMWWKGLSF 118


>tr|Q9LFY5|Q9LFY5_ARATH T7N9.6 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 334

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPNLLAQLSRLKQELSNLSSERASVTIV 417
           +NG LSD + +   ++    K   G    S V   + AQ+ RL  E+  L+S++  +T++
Sbjct: 27  KNGKLSDLLGELQSLVKGMEKSGEGSEGDSDVSDAIAAQVRRLAMEIRQLASQQ-HITVM 85

Query: 418 TSNSRSSXXXXXXXXXXXXXSAA----GYGYMRWRGLSF 522
              S  S             +AA    GYGYM W+GLSF
Sbjct: 86  NGVSGDSLVFSANLQALAVPAAALGALGYGYMWWKGLSF 124


>tr|A7Q2S6|A7Q2S6_VITVI Chromosome chr1 scaffold_46, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029000001
           PE=4 SV=1
          Length = 303

 Score = 46.6 bits (109), Expect = 8e-04
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPN--LLAQLSRLKQELSNLSSERASVT 411
           +NG LSD + +    LVK L+ + G S     D +  + AQ+ RL  E+  L+S R  +T
Sbjct: 27  KNGKLSDILGELQS-LVKGLE-KKGDSSNGEADYSDAIAAQVRRLAMEVKQLASAR-QIT 83

Query: 412 IVTSNSRSSXXXXXXXXXXXXXSAAGYGYMRWRGLS 519
           ++  NS                 A GYGYM W+GLS
Sbjct: 84  VLNGNSGQIGNITSLAIPAATLGALGYGYMWWKGLS 119


>tr|A9NX71|A9NX71_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 324

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 30/95 (31%), Positives = 46/95 (48%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKHESGPSQKSSVDPNLLAQLSRLKQELSNLSSERASVTIV 417
           ++G LSD +++  + L+K +      S  +     L AQ+ RL QE+  L+S R  +T++
Sbjct: 27  RSGRLSDIISEL-QGLLKGIDERGESSSNTESAAVLAAQIRRLAQEVRQLASSRP-ITVL 84

Query: 418 TSNSRSSXXXXXXXXXXXXXSAAGYGYMRWRGLSF 522
             NS  S              A GY YM W+G SF
Sbjct: 85  NGNSGQSGNAASLLMPVAALGAMGYCYMWWKGWSF 119


>tr|Q65WY7|Q65WY7_ORYSJ Os05g0182700 protein OS=Oryza sativa subsp.
           japonica GN=P0683B12.2 PE=2 SV=1
          Length = 286

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +1

Query: 238 QNGNLSDFVNDTYKVLVKHLKHESGPSQKSS-VDPNLLAQLSRLKQELSNLSSERASVTI 414
           +NG LS+ + +  ++L K  K + G     + +   L  Q+  L  E+  L+S R S+T+
Sbjct: 28  RNGRLSEILGELQEILDKGEKGKDGEGGGGADMTDALTRQVRNLAMEVKQLASSRGSITV 87

Query: 415 VTSNSRSSXXXXXXXXXXXXXSAAGYGYMRWRGLSF 522
           +   S  +              A GYGYM W+G+SF
Sbjct: 88  LNGGSGQTGVSGLIVPAATV-GALGYGYMWWKGISF 122