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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953624
Clone id TST39A01NGRL0018_E08
Library
Length 600
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_E08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AGTAATTCTCCGGGAGGCCCAATGCAGTGGGAGCTGAAATCAGAAGAACTCGAGAAAACA
TAGCAGGAGTCTACTTCCTTCGCTTGCTCTCGGGAGAGCCTTTCCTTGAGCCCAAATGGA
GAGTCTTTGTGCTGCTGCAGGCAGTTCTATTGCTGCTCCCATTTTCAATTCTTTTTGCTC
AGTTTCCAAATCTCCGATGCGAGGCACTTTCACAAGCAGTTTAGCTTTGCAAATGCAATC
GCCTTTTTGCCTCCGATCTGGCATTTCCAGCTGTGTAAAGCCAATCAATGCCATAGCCTC
TATTCCTGAAAAGGCTAATGAGGTTGAGAAGGAAGTTAGTTTAAATAAGAATTTGGCTTC
TCTTGCTCCAAATGCTTTTGAGGTCCAGTCTCTACTTATGGAGGTTTGTGATGAGACAAG
CATTGCAGAGCTAGATCTTAAGGTAGGTGCTTTCAAGCTGCATGTGAAGAGAGATGTCGG
AAAGTTGAAAGGGTCTGCTCCAGCTGTGCCTGTGGCACCTCCTGTCCCTAGCAAGCCTAT
GGTAGAATCTGGGCCACCCGTGGTTGTATCACCGGGCACCAAAGTCCCCATCTGTATCAG
■■Homology search results ■■ -
sp_hit_id Q7V0U2
Definition sp|Q7V0U2|COBQ_PROMP Cobyric acid synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4)
Align length 76
Score (bit) 32.7
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953624|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_E08, 5'
         (600 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7V0U2|COBQ_PROMP Cobyric acid synthase OS=Prochlorococcus ma...    33   1.4  
sp|P38422|DACF_BACSU D-alanyl-D-alanine carboxypeptidase dacF OS...    32   2.5  
sp|Q5F829|ISPD_NEIG1 2-C-methyl-D-erythritol 4-phosphate cytidyl...    30   9.3  
sp|Q9Z104|HM20B_MOUSE SWI/SNF-related matrix-associated actin-de...    30   9.3  
sp|Q9P0W2|HM20B_HUMAN SWI/SNF-related matrix-associated actin-de...    30   9.3  
sp|Q32L68|HM20B_BOVIN SWI/SNF-related matrix-associated actin-de...    30   9.3  

>sp|Q7V0U2|COBQ_PROMP Cobyric acid synthase OS=Prochlorococcus
           marinus subsp. pastoris (strain CCMP1378 / MED4) GN=cobQ
           PE=3 SV=1
          Length = 509

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +2

Query: 233 MQSPFCLRSGISSCVKPINAIASIPEKANEVEKEVSLNKNLASLAPNAFEVQSLLMEVCD 412
           ++ PF       +C K IN I  +P K    +K+++   N  S+ P   E+    +    
Sbjct: 353 LEDPFFKEGSKINCEKSINGIGLLPLKTTFFQKKITRQINSESIWPQVTEINGFEI---- 408

Query: 413 ETSIAELDLKVGAFKL 460
              + ELD     FK+
Sbjct: 409 HNGVTELDNSQDTFKI 424


>sp|P38422|DACF_BACSU D-alanyl-D-alanine carboxypeptidase dacF
           OS=Bacillus subtilis GN=dacF PE=2 SV=2
          Length = 389

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
 Frame = +2

Query: 278 KPINAIASIPEKANEVEKEVSLNKNLASLAPNAFEVQSLLM----EVCDETSI-AELDLK 442
           +PI+ +    E  N+V+KE+ +  N+++      E+ +L++    EV  E+ + A+ D+K
Sbjct: 311 EPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKKDGEVLAESPVAAKEDMK 370

Query: 443 VGAFKLHVKRDVG 481
              F   +KR +G
Sbjct: 371 KAGFITFLKRTMG 383


>sp|Q5F829|ISPD_NEIG1 2-C-methyl-D-erythritol 4-phosphate
           cytidylyltransferase OS=Neisseria gonorrhoeae (strain
           ATCC 700825 / FA 1090) GN=ispD PE=1 SV=1
          Length = 229

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 24/90 (26%), Positives = 38/90 (42%)
 Frame = +2

Query: 62  SRSLLPSLALGRAFP*AQMESLCAAAGSSIAAPIFNSFCSVSKSPMRGTFTSSLALQMQS 241
           +R  LPS AL R    A      AA G  +A P+ ++        +  T   S   Q Q+
Sbjct: 111 ARCCLPSEALARLIEQAGN----AAEGGILAVPVADTLKRAESGQISATVDRSGLWQAQT 166

Query: 242 PFCLRSGISSCVKPINAIASIPEKANEVEK 331
           P   ++G+         +  I ++A+ VEK
Sbjct: 167 PQLFQAGLLHRALAAENLGGITDEASAVEK 196


>sp|Q9Z104|HM20B_MOUSE SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily E
           member 1-related OS=Mus musculus GN=Hmg20b PE=1 SV=1
          Length = 317

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 209 KCLASEIWKLSKKN*KWEQQ*NCLQQHKDSPFGLKERLSREQAKE 75
           K   +E+ +L K N  +E+Q   LQ+H  S    +ERL +E A E
Sbjct: 197 KAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALE 241


>sp|Q9P0W2|HM20B_HUMAN SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily E
           member 1-related OS=Homo sapiens GN=HMG20B PE=1 SV=1
          Length = 317

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 209 KCLASEIWKLSKKN*KWEQQ*NCLQQHKDSPFGLKERLSREQAKE 75
           K   +E+ +L K N  +E+Q   LQ+H  S    +ERL +E A E
Sbjct: 197 KAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALE 241


>sp|Q32L68|HM20B_BOVIN SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily E
           member 1-related OS=Bos taurus GN=HMG20B PE=2 SV=1
          Length = 317

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 209 KCLASEIWKLSKKN*KWEQQ*NCLQQHKDSPFGLKERLSREQAKE 75
           K   +E+ +L K N  +E+Q   LQ+H  S    +ERL +E A E
Sbjct: 197 KAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALE 241
tr_hit_id A9S3B2
Definition tr|A9S3B2|A9S3B2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 131
Score (bit) 66.2
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953624|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_E08, 5'
         (600 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S3B2|A9S3B2_PHYPA Predicted protein OS=Physcomitrella paten...    66   1e-09
tr|A9TAN6|A9TAN6_PHYPA Predicted protein OS=Physcomitrella paten...    60   1e-07
tr|A9SAT7|A9SAT7_PHYPA Predicted protein OS=Physcomitrella paten...    60   1e-07
tr|A5BYY0|A5BYY0_VITVI Putative uncharacterized protein OS=Vitis...    57   6e-07
tr|A7Q3Q6|A7Q3Q6_VITVI Chromosome chr13 scaffold_48, whole genom...    55   4e-06
tr|Q9LW10|Q9LW10_ARATH Arabidopsis thaliana genomic DNA, chromos...    51   4e-05
tr|Q8GRT9|Q8GRT9_ARATH Putative acetyl-CoA carboxylase biotin-co...    51   4e-05
tr|A9NN96|A9NN96_PICSI Putative uncharacterized protein OS=Picea...    48   4e-04
tr|A8HMA8|A8HMA8_CHLRE Acetyl-coa biotin carboxyl carrier OS=Chl...    46   0.002
tr|Q8VZ68|Q8VZ68_ARATH Putative uncharacterized protein At1g5267...    45   0.002
tr|Q9SSR9|Q9SSR9_ARATH F6D8.11 protein OS=Arabidopsis thaliana G...    44   0.005
tr|Q93W03|Q93W03_ARATH AT3g56130/F18O21_90 OS=Arabidopsis thalia...    44   0.009
tr|Q3EAI9|Q3EAI9_ARATH Uncharacterized protein At3g56130.2 OS=Ar...    42   0.035
tr|Q2HVX5|Q2HVX5_MEDTR Biotin/lipoyl attachment OS=Medicago trun...    39   0.18 
tr|Q5GMI3|Q5GMI3_CAEEL Putative uncharacterized protein OS=Caeno...    35   3.4  
tr|Q9UVN4|Q9UVN4_COPCI Rcb1.42 OS=Coprinopsis cinerea GN=rcb1.42...    35   4.3  
tr|B6H3I6|B6H3I6_PENCH Pc13g06750 protein OS=Penicillium chrysog...    34   5.6  
tr|Q0I2R7|Q0I2R7_HAES1 Transposase OS=Haemophilus somnus (strain...    34   5.7  
tr|A5EX19|A5EX19_DICNV Transposase, IS605 family OS=Dichelobacte...    34   5.7  
tr|A9WCT7|A9WCT7_CHLAA Putative uncharacterized protein OS=Chlor...    34   7.5  
tr|B6KLA8|B6KLA8_TOXGO Helicase, putative OS=Toxoplasma gondii M...    33   9.6  

>tr|A9S3B2|A9S3B2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162594 PE=4 SV=1
          Length = 294

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
 Frame = +2

Query: 131 AAAGSSIAAPIFNSFCSVSKSPMRGTFTSSLALQMQSPF--CLRSGISSCVKPINAIA-- 298
           A  GSS+ + I +    V  +P      SS    + +P   C+ +G++   +     A  
Sbjct: 10  AVTGSSLQSVIGSEKQCVVAAPAERISISSRRSSIAAPLRECIITGLAPVTRTFQPRAVT 69

Query: 299 --------SIPEKANEVEKEVSLNKNLASLAPNAFEVQSLLMEVCDETS-IAELDLKVGA 451
                    + +  NEVE+E         L P+AFEVQ+LLM+VCDETS IAE+ LKVG+
Sbjct: 70  ADYLGEESEVLDAENEVEEEAD-----NPLVPSAFEVQNLLMQVCDETSNIAEVQLKVGS 124

Query: 452 FKLHVKRDVGK 484
           F L VKR +GK
Sbjct: 125 FSLRVKRKIGK 135


>tr|A9TAN6|A9TAN6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168965 PE=4 SV=1
          Length = 370

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 27/48 (56%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
 Frame = +2

Query: 347 KNLASLAPNAFEVQSLLMEVCDETS-IAELDLKVGAFKLHVKRDVGKL 487
           + L+ L P +FE+++LLM+VCDETS +AE++LKVG F L VKR++GK+
Sbjct: 166 EELSPLTPTSFEIENLLMQVCDETSKVAEVELKVGDFSLRVKREIGKV 213


>tr|A9SAT7|A9SAT7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163869 PE=4 SV=1
          Length = 300

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
 Frame = +2

Query: 314 ANEVEKEVSLNKNLASLAPNAFEVQSLLMEVCDETS-IAELDLKVGAFKLHVKRDVGK 484
           A EVE EV   +    L P+AFEVQ+LLM+VCDETS I+E+ +KVG+F L V+R++GK
Sbjct: 85  AEEVE-EVVEEEEENPLIPSAFEVQNLLMQVCDETSNISEVQMKVGSFSLRVRREIGK 141


>tr|A5BYY0|A5BYY0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031448 PE=4 SV=1
          Length = 252

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 26/46 (56%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 ASLAPNAFEVQSLLMEVCDETSIAELDLKVGAFKLHVKRDV-GKLK 490
           + L PNA+EV+SLL E+CD TSIAE +LK+G F+L++ RD+ GK++
Sbjct: 64  SQLTPNAYEVESLLSEICDTTSIAEFELKLGGFRLYMMRDLAGKIE 109


>tr|A7Q3Q6|A7Q3Q6_VITVI Chromosome chr13 scaffold_48, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029376001
           PE=4 SV=1
          Length = 288

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
 Frame = +2

Query: 233 MQSPFCLRSGISSCVKPINAIASIPEKANEVEKEVSLNKNLASLA--PNAFEVQSLLMEV 406
           + SP   +  + SCVK      +   K ++   +  L K+    A  PN FE  +L++EV
Sbjct: 55  ISSPIKQKGTLISCVKTPETAGTA--KCDDGNPQGLLQKDTLPSATFPNGFE--ALILEV 110

Query: 407 CDETSIAELDLKVGAFKLHVKRDVG 481
           CDET +AEL LKVG F++H++R+VG
Sbjct: 111 CDETDVAELKLKVGDFEMHLRRNVG 135


>tr|Q9LW10|Q9LW10_ARATH Arabidopsis thaliana genomic DNA, chromosome
           3, P1 clone: MSJ11 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 275

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 36/50 (72%)
 Frame = +2

Query: 329 KEVSLNKNLASLAPNAFEVQSLLMEVCDETSIAELDLKVGAFKLHVKRDV 478
           KE+  ++  A L P   EV++L+ E+CD +SIAE +LK+G F+L+V R++
Sbjct: 76  KEIKSSRLNAQLVPKPSEVEALVTEICDSSSIAEFELKLGGFRLYVARNI 125


>tr|Q8GRT9|Q8GRT9_ARATH Putative acetyl-CoA carboxylase
           biotin-containing subunit OS=Arabidopsis thaliana
           GN=At3g15690 PE=2 SV=1
          Length = 263

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 36/50 (72%)
 Frame = +2

Query: 329 KEVSLNKNLASLAPNAFEVQSLLMEVCDETSIAELDLKVGAFKLHVKRDV 478
           KE+  ++  A L P   EV++L+ E+CD +SIAE +LK+G F+L+V R++
Sbjct: 76  KEIKSSRLNAQLVPKPSEVEALVTEICDSSSIAEFELKLGGFRLYVARNI 125


>tr|A9NN96|A9NN96_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 299

 Score = 48.1 bits (113), Expect = 4e-04
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
 Frame = +2

Query: 263 ISSCVKPINAIASIPEKANEVEK----EVSLNKNLASLAPNAFEVQSLLMEVCDETSIAE 430
           +SS VK  +A  ++    + +E     E+       +L P+  E  S + EVCDET IAE
Sbjct: 67  LSSNVKASHATFAMASDKDALESGSLGELEKGNQNGALFPDGIE--SFITEVCDETDIAE 124

Query: 431 LDLKVGAFKLHVKRDVGKLK 490
           + LK G+F +H++R++ K K
Sbjct: 125 IKLKAGSFAMHIRRNIEKSK 144


>tr|A8HMA8|A8HMA8_CHLRE Acetyl-coa biotin carboxyl carrier
           OS=Chlamydomonas reinhardtii GN=BCC2 PE=4 SV=1
          Length = 232

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 27/68 (39%), Positives = 40/68 (58%)
 Frame = +2

Query: 275 VKPINAIASIPEKANEVEKEVSLNKNLASLAPNAFEVQSLLMEVCDETSIAELDLKVGAF 454
           V P+ A AS  EK  E   EV    +   + P+  EV + +  +C++T IAE+ LK+G+F
Sbjct: 29  VPPMKATASTAEKKAEAA-EVEEEFDGPEVNPSTQEVAAFINTLCNDTEIAEMHLKMGSF 87

Query: 455 KLHVKRDV 478
           +L VKR V
Sbjct: 88  ELKVKRSV 95


>tr|Q8VZ68|Q8VZ68_ARATH Putative uncharacterized protein At1g52670
           (Is a member of the PF|00364 Biotin-requiring enzymes
           family) OS=Arabidopsis thaliana GN=At1g52670 PE=2 SV=1
          Length = 274

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
 Frame = +2

Query: 182 VSKSPM-----RGTFTSSLALQMQSPFCLRSGISSCVKPINAIASIPEKANEVEKEVSLN 346
           V +SPM     R T  S  A+Q+           S V P    A    K ++  K   +N
Sbjct: 36  VDQSPMKYLSLRTTLRSVKAIQL-----------STVPPAETEAIADVKDSDETKSTVVN 84

Query: 347 KNLASLAPNAFEVQSLLMEVCDETSIAELDLKVGAFKLHVKR 472
            +L    P + EV++L+ E+ D +SIAE +LK+G F+L+V R
Sbjct: 85  THLM---PKSSEVEALISEITDSSSIAEFELKLGGFRLYVAR 123