DK953606
Clone id TST39A01NGRL0018_D14
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_D14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CAAATATCTCCTTCTGTATCTAAGCAGGATATGGCGTACTATAATGGCCTTCCCAAAAAG
TTTGGTCGGACATCAGGATTGAATGGAATAGCTGCTGAAACATTTGTTTGAGTCCATTTG
GTAACATCAAAGCGTATTGAATTCGGCAGTAGGAGACCTTCAAGGGTTGCAAGGCTATTT
GGCCCCTTCTCAAATGTGTTGATGATCTCTGCCATTGAAGCTTCTAAAATGAAGATGCTG
TTGGAAGGAGTGGAGCGGGGTTTATGCCATCAAGACGTGATTTCCAAGTGCAGGAGATGA
AATACCTGCTGCCCACTGCTTGATGTGAGCATACGATCTGCTTGCTTAGCTGCATTGTGC
TCACAGGTCCTATATGCAGGAAACCCTGAGCTACAAGGATGCAATATTTTGACGTCTAAT
CGCTTCCATTACTGCTGAGTTTCTTTGGTGGCTA
■■Homology search results ■■ -
sp_hit_id Q2NQA9
Definition sp|Q2NQA9|ILVC_SODGM Ketol-acid reductoisomerase OS=Sodalis glossinidius (strain morsitans)
Align length 92
Score (bit) 32.0
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953606|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D14, 5'
(454 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2NQA9|ILVC_SODGM Ketol-acid reductoisomerase OS=Sodalis glos... 32 1.3
sp|A8WX89|U533_CAEBR UPF0533 protein CBG04321 OS=Caenorhabditis ... 32 1.7
sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1... 30 4.9
sp|Q55983|TGT_SYNY3 Queuine tRNA-ribosyltransferase OS=Synechocy... 29 8.2
sp|Q92349|MUG79_SCHPO Meiotically up-regulated gene 79 protein O... 29 8.2
sp|O60941|DTNB_HUMAN Dystrobrevin beta OS=Homo sapiens GN=DTNB P... 29 8.4

>sp|Q2NQA9|ILVC_SODGM Ketol-acid reductoisomerase OS=Sodalis
glossinidius (strain morsitans) GN=ilvC PE=3 SV=1
Length = 492

Score = 32.0 bits (71), Expect = 1.3
Identities = 26/92 (28%), Positives = 41/92 (44%)
Frame = -1

Query: 361 STMQLSKQIVCSHQAVGSRYFISCTWKSRLDGINPAPLLPTASSF*KLQWQRSSTHLRRG 182
S + + I+C GS + C K DG++PA A + W+ ++ L++G
Sbjct: 216 SDLMGEQTILCGMLQAGS---LLCFDKMVADGVDPA----YAGKLIQFGWETTTEALKQG 268

Query: 181 QIALQPLKVSYCRIQYALMLPNGLKQMFQQLF 86
I L ++S A L LKQ+ Q LF
Sbjct: 269 GITLMMDRLSNSAKLRAYALSEQLKQLMQPLF 300


>sp|A8WX89|U533_CAEBR UPF0533 protein CBG04321 OS=Caenorhabditis
briggsae GN=CBG04321 PE=3 SV=1
Length = 414

Score = 31.6 bits (70), Expect = 1.7
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2

Query: 236 CCWKEWSGV-YAIKT*FPSAGDEIPAAHCLM*AYDLLA*LHCAHRSYMQETLSYKD 400
C W+EW+ + +IK S DE P L+ D+ L C + TL YKD
Sbjct: 218 CSWREWNWIRVSIKVTSISHEDEFPEVGKLLKPKDIRQFLFCLSPVDVNNTLGYKD 273


>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156
OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1
Length = 903

Score = 30.0 bits (66), Expect = 4.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1

Query: 1 QISPSVSKQDMAYYNGLPKKFGRTSGL 81
+I PSVSK+DM Y L +++GR + +
Sbjct: 866 KIKPSVSKEDMRVYEKLAQEYGRATSV 892


>sp|Q55983|TGT_SYNY3 Queuine tRNA-ribosyltransferase
OS=Synechocystis sp. (strain PCC 6803) GN=tgt PE=3 SV=1
Length = 374

Score = 29.3 bits (64), Expect = 8.2
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Frame = -3

Query: 332 MLTSSSGQQVFHLLHLEITS*----WHKPRS------TPSNSIFILEASMAEIINTFEKG 183
MLT S G QVF L L + PR TP NSI I A A++I F++
Sbjct: 95 MLTDSGGFQVFSLSQLRTIGEQGVLFRSPRDGRLIDMTPENSIRIQNALGADVIMAFDEC 154

Query: 182 P 180
P
Sbjct: 155 P 155


>sp|Q92349|MUG79_SCHPO Meiotically up-regulated gene 79 protein
OS=Schizosaccharomyces pombe GN=mug79 PE=1 SV=1
Length = 1318

Score = 29.3 bits (64), Expect = 8.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3

Query: 248 PSNSIFILEASMAEIINTFEKGPNSLATLEGLLLPNSIRFDVT 120
PS+ FILE + E +TF K P ++ L N +R D+T
Sbjct: 911 PSDIGFILECMLKEYYDTFLKSPFAVPNAVQAQLHNQVRGDLT 953


>sp|O60941|DTNB_HUMAN Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1
SV=1
Length = 627

Score = 29.3 bits (64), Expect = 8.4
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -1

Query: 220 LQWQRSSTHLRRGQIALQPLKVSYCRIQYALMLPNGLKQMFQQLFHSILMSDQTFWEGHY 41
L W L + P++ SYCR + + G + QQ H+ + FW GH
Sbjct: 222 LVWLPLMHRLAHVENVFHPVECSYCRCESMM----GFRYRCQQC-HNYQLCQNCFWRGHA 276

Query: 40 STPY 29
P+
Sbjct: 277 GGPH 280


tr_hit_id Q5QI73
Definition tr|Q5QI73|Q5QI73_HBV HBsAg (Fragment) OS=Hepatitis B virus
Align length 71
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953606|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D14, 5'
(454 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5QI73|Q5QI73_HBV HBsAg (Fragment) OS=Hepatitis B virus GN=S ... 35 2.4
tr|A9A8B9|A9A8B9_METM6 AAA family ATPase, CDC48 subfamily OS=Met... 34 4.2
tr|A6VIG6|A6VIG6_METM7 AAA family ATPase, CDC48 subfamily OS=Met... 33 5.4
tr|A4G012|A4G012_METM5 AAA family ATPase, CDC48 subfamily OS=Met... 33 7.1
tr|Q014M5|Q014M5_OSTTA Tenascin X (ISS) OS=Ostreococcus tauri GN... 33 9.3

>tr|Q5QI73|Q5QI73_HBV HBsAg (Fragment) OS=Hepatitis B virus GN=S
PE=4 SV=1
Length = 114

Score = 34.7 bits (78), Expect = 2.4
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -1

Query: 400 ILVAQGFLHIGPV----STMQLSKQIVCSHQAVGSRYFISCTWKSRLDGINPAPLLPTAS 233
+L QG L + P+ ST C+ A G+ + SC W DG +P++
Sbjct: 44 LLDYQGMLPVCPLIPGSSTTSTGPCRTCTTLAQGTSMYPSCCWTKPSDGNCTCIPIPSSW 103

Query: 232 SF*KLQWQRSS 200
+F KL W+R+S
Sbjct: 104 AFGKLLWERAS 114


>tr|A9A8B9|A9A8B9_METM6 AAA family ATPase, CDC48 subfamily
OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332)
GN=MmarC6_0775 PE=3 SV=1
Length = 781

Score = 33.9 bits (76), Expect = 4.2
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +1

Query: 1 QISPSVSKQDMAYYNGLPKKFGRTSGLNGI 90
+I+PSV ++DM Y L K++GRT+G++ I
Sbjct: 748 RIAPSVKEEDMDEYRDLAKEYGRTTGVSEI 777


>tr|A6VIG6|A6VIG6_METM7 AAA family ATPase, CDC48 subfamily
OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
GN=MmarC7_1176 PE=3 SV=1
Length = 800

Score = 33.5 bits (75), Expect = 5.4
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1

Query: 1 QISPSVSKQDMAYYNGLPKKFGRTSGLNGI 90
+I+PSV +DM Y L K++GRT+G++ I
Sbjct: 764 RIAPSVKDEDMEEYRDLAKEYGRTTGVSEI 793


>tr|A4G012|A4G012_METM5 AAA family ATPase, CDC48 subfamily
OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
GN=MmarC5_1499 PE=3 SV=1
Length = 784

Score = 33.1 bits (74), Expect = 7.1
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1

Query: 1 QISPSVSKQDMAYYNGLPKKFGRTSGLNGI 90
+I+PSV +DM Y L K++GRT+G++ I
Sbjct: 748 RIAPSVKDEDMDEYRDLAKEYGRTTGVSEI 777


>tr|Q014M5|Q014M5_OSTTA Tenascin X (ISS) OS=Ostreococcus tauri
GN=Ot07g03810 PE=4 SV=1
Length = 1495

Score = 32.7 bits (73), Expect = 9.3
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -3

Query: 260 PRSTPSNSIFILEASMAEIINTFEKGPNSLATLEGLLLPNSIRFDVTKWTQTNVSAAIPF 81
PR T + + + S+ E T E + T E + LP+ +RFD T T + IP+
Sbjct: 512 PRVTSDDILTATQDSLYEYRITAEDADGDVLTYEAVTLPSFLRFDPT----TRLLTGIPY 567

Query: 80 NPDVR 66
DV+
Sbjct: 568 EADVQ 572