DK953594
Clone id TST39A01NGRL0018_D02
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_D02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTGTGTGTGTGTTCCTAGTATATGCTGATCATTTGCAATTGCAAGGCAATTTGTCCTGAT
TATTAGCCATTGGAAGGCTGTGGATAGGCAAATTGAGTTGATTGTGTTGTCAGAGTAGCC
TTGTGGATGTGCAAATTAGTGTTTACATTTATGCATGCAAATCAGAAGGGCGTTGATGAG
GCTGTGGATGAGCAAATTGGATGAATACATATGTGTGTGTCTAAGCGCTGCATATTCGCT
GAAGGAACGAGCAAATTAGAAGAATCCATATGTGTGGGCGTATGTTCTGATGAGGTTAAG
CTCTGCATATGAGCTATGGAGATCAAGGTGGGAGGTAGCAACAGAAAAGCAGGGATTAGC
AAGCTGAGCAAGTGTGTGCAAATATGGGATCTTCATTTGTGTAGTGCGTATCCTCATTCT
CTTCTTTGCAGTGCTTGAATCCCTCTTTTGCTTTCTCTATTTTTGATATTCTCCACTTCA
CACCTTCTGGTGGCCTCCTCCTCAGTCTTTCCGCTATCAAGTCATTTTCACACTCGCCCC
TCCCCT
■■Homology search results ■■ -
sp_hit_id Q03EQ7
Definition sp|Q03EQ7|MUTS_PEDPA DNA mismatch repair protein mutS OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Align length 48
Score (bit) 31.2
E-value 3.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953594|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D02, 5'
(546 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q03EQ7|MUTS_PEDPA DNA mismatch repair protein mutS OS=Pedioco... 31 3.4
sp|Q2JD52|MURD_FRASC UDP-N-acetylmuramoylalanine--D-glutamate li... 30 5.9
sp|P30347|LIGF_PSEPA Protein ligF OS=Pseudomonas paucimobilis GN... 30 9.9

>sp|Q03EQ7|MUTS_PEDPA DNA mismatch repair protein mutS
OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
GN=mutS PE=3 SV=1
Length = 873

Score = 31.2 bits (69), Expect = 3.4
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1

Query: 438 SSTAKKRMRIRTTQMKIPYL-HTLAQLANPCFSVATSHLDLHSSYAEL 298
S + ++++T+ ++IP + H L +L+ P F A HLD S AEL
Sbjct: 352 SVNGRDLIQLKTSLLQIPKVRHILEELSEPVFDDALEHLDPVSDIAEL 399


>sp|Q2JD52|MURD_FRASC UDP-N-acetylmuramoylalanine--D-glutamate
ligase OS=Frankia sp. (strain CcI3) GN=murD PE=3 SV=1
Length = 471

Score = 30.4 bits (67), Expect = 5.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1

Query: 417 MRIRTTQMKIPYLHTLAQLANPCFSVATSHLDLHSSYA 304
+ + + ++ Y HT+A LA +VA HLD H A
Sbjct: 180 LAVELSSFQLHYTHTMAPLAAAVLNVAPDHLDWHGGAA 217


>sp|P30347|LIGF_PSEPA Protein ligF OS=Pseudomonas paucimobilis
GN=ligF PE=3 SV=1
Length = 257

Score = 29.6 bits (65), Expect = 9.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2

Query: 164 RRALMRLWMSKLDEYICVCLS 226
+RA MR+W +DEY C C+S
Sbjct: 92 KRAEMRVWTKWVDEYFCWCVS 112


tr_hit_id A0JV92
Definition tr|A0JV92|A0JV92_ARTS2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Arthrobacter sp. (strain FB24)
Align length 51
Score (bit) 34.3
E-value 4.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953594|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_D02, 5'
(546 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0JV92|A0JV92_ARTS2 UDP-N-acetylmuramoylalanine--D-glutamate ... 34 4.4
tr|Q01DR2|Q01DR2_OSTTA Chromosome 02 contig 1, DNA sequence OS=O... 34 4.4
tr|Q7QJN4|Q7QJN4_ANOGA AGAP007592-PA OS=Anopheles gambiae GN=AGA... 34 5.8
tr|A1R5F6|A1R5F6_ARTAT UDP-N-acetylmuramoylalanine--D-glutamate ... 33 9.8

>tr|A0JV92|A0JV92_ARTS2 UDP-N-acetylmuramoylalanine--D-glutamate
ligase OS=Arthrobacter sp. (strain FB24) GN=Arth_1568
PE=4 SV=1
Length = 528

Score = 34.3 bits (77), Expect = 4.4
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1

Query: 417 MRIRTTQMKIPYLHTLAQLANPCFSVATSHLDLHSSYAE--LNLIRTYAHT 271
+ + + ++ + H+++ +A+ C +VA H+D H SYA + + Y HT
Sbjct: 194 LAVELSSFQLHWSHSVSPVASVCLNVAEDHVDWHGSYASYLADKAKVYEHT 244


>tr|Q01DR2|Q01DR2_OSTTA Chromosome 02 contig 1, DNA sequence
OS=Ostreococcus tauri GN=Ot02g06660 PE=4 SV=1
Length = 335

Score = 34.3 bits (77), Expect = 4.4
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -1

Query: 402 TQMKIP-YLHTLAQLANPCFSVATSHLDLHSSYAELNLIRTYAHTYGFF*FARSFSEYAA 226
T+ ++P Y H + A+PC H A L++ ++AH F RS S ++A
Sbjct: 149 TRARVPAYAHVSSFHAHPCSCAYFKHSKCPFKAANLHVSASHAHPCSCKNFRRSLSPFSA 208

Query: 225 LRHTHMYSS 199
R T ++SS
Sbjct: 209 ARSTGVFSS 217


>tr|Q7QJN4|Q7QJN4_ANOGA AGAP007592-PA OS=Anopheles gambiae
GN=AGAP007592 PE=3 SV=4
Length = 1944

Score = 33.9 bits (76), Expect = 5.8
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = -1

Query: 441 DSSTAKKRMRIRTTQMKIPYLHTLAQLANPCFSVATSHLDLHSSYAELNLIRTYAHT 271
D TAK+ +++R + PY+ L+QLA TS LD+ + AE N RT A T
Sbjct: 159 DPKTAKQSLKVREHNVLGPYVDGLSQLA------VTSFLDIDNLMAEGNKSRTVAAT 209


>tr|A1R5F6|A1R5F6_ARTAT UDP-N-acetylmuramoylalanine--D-glutamate
ligase OS=Arthrobacter aurescens (strain TC1) GN=murD
PE=4 SV=1
Length = 524

Score = 33.1 bits (74), Expect = 9.8
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1

Query: 411 IRTTQMKIPYLHTLAQLANPCFSVATSHLDLHSSYA 304
+ + ++ + H+L+ +A+ C +VA H+D H SYA
Sbjct: 196 VELSSFQLHWSHSLSPVASVCLNVAEDHVDWHGSYA 231