DK953582 |
Clone id |
TST39A01NGRL0018_C13 |
Library |
TST39 |
Length |
571 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_C13. 5' end sequence. |
Accession |
DK953582 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGATGTCGAACATTGGCACCCTTCCATGGCCCCAAGGCACTCGGTTGGTTCACATTGGAG GGGATGTGTTGGGTACTGACAAGGCAGTGTCTCTCGAGCTGCCTGAAAGTGGGGTTCCAT GCGGGGAAGAGGCGGAGGTATCAGTGGACCTTGTCACTCCAGAAAAGGCAGGGCGCTATG TTTCACATTGGCGCCTATCAGCTCCATCAGGACAGAAGTTTGGGCATAGAGTGTGGGTAG TGATTCATGTTGTTCCTCATGGAGAAAAGTCTCCCCAGTTCCAGGCCTCTCTGCAGGCTG GGGAGAAGGGTATTGAAGCAAGTGAAGACACTATCGTTCAAGATAATAATGATGGTGCAA ATACAAGGAAAATTGATGTAAATACAAATGGAGCGGACAAAGCAACGGTGGGTGTGGTCA TTGATAGTGTATCAGGAGTTTTAAGAGTGGAACAGTCTGGACCTGCTGATTATGAAAACA ACACGAAGATTTTGTATCCCGATCCGACATCTTTCCATGTGGATGATGATGTGGAGAAGT GCAAACTTGAAGTAGATGATGACTTTTCGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5RC94 |
Definition |
sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii |
Align length |
95 |
Score (bit) |
57.4 |
E-value |
5.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953582|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0018_C13, 5' (571 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abeli... 57 5e-08 sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapien... 57 5e-08 sp|Q5F3N9|CF106_CHICK Uncharacterized protein C6orf106 homolog O... 56 1e-07 sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculu... 55 2e-07 sp|Q9H6K1|CF106_HUMAN Uncharacterized protein C6orf106 OS=Homo s... 55 2e-07 sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norveg... 55 3e-07 sp|Q5BL31|CF106_DANRE Uncharacterized protein C6orf106 homolog O... 51 4e-06 sp|Q3TT38|CF106_MOUSE Uncharacterized protein C6orf106 homolog O... 48 3e-05 sp|Q8VDL9|GLIS2_MOUSE Zinc finger protein GLIS2 OS=Mus musculus ... 36 0.12 sp|Q9BZE0|GLIS2_HUMAN Zinc finger protein GLIS2 OS=Homo sapiens ... 34 0.58 sp|A8FWJ3|SPEA_SHESH Biosynthetic arginine decarboxylase OS=Shew... 33 0.99 sp|O00291|HIP1_HUMAN Huntingtin-interacting protein 1 OS=Homo sa... 33 0.99 sp|Q9KPT7|CRL_VIBCH Sigma factor-binding protein crl OS=Vibrio c... 33 1.3 sp|A5F604|CRL_VIBC3 Sigma factor-binding protein crl OS=Vibrio c... 33 1.3 sp|Q98T94|GLIS2_XENLA Zinc finger protein GLIS2 OS=Xenopus laevi... 32 1.7 sp|Q6MB26|DNAK_PARUW Chaperone protein dnaK OS=Protochlamydia am... 32 1.7 sp|A3QDD8|SPEA_SHELP Biosynthetic arginine decarboxylase OS=Shew... 32 2.9 sp|P63502|CYBL2_MYCTU Putative cystathionine beta-lyase OS=Mycob... 31 3.8 sp|P63503|CYBL2_MYCBO Putative cystathionine beta-lyase OS=Mycob... 31 3.8 sp|Q90275|CADH2_DANRE Cadherin-2 OS=Danio rerio GN=cdh2 PE=2 SV=2 31 3.8 sp|Q54DG3|Y4305_DICDI Putative uncharacterized protein DDB_G0292... 31 4.9 sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=C... 31 4.9 sp|Q28634|CAD16_RABIT Cadherin-16 OS=Oryctolagus cuniculus GN=CD... 31 4.9 sp|P13828|MSP1_PLAYO Merozoite surface protein 1 OS=Plasmodium y... 31 5.0 sp|Q98BJ1|Y5550_RHILO UPF0090 protein mlr5550 OS=Rhizobium loti ... 30 6.4 sp|A8H5G3|SPEA_SHEPA Biosynthetic arginine decarboxylase OS=Shew... 30 6.4 sp|Q12LW6|SPEA_SHEDO Biosynthetic arginine decarboxylase OS=Shew... 30 6.4 sp|Q80T03|MUC6_MOUSE Mucin-6 OS=Mus musculus GN=Muc6 PE=2 SV=1 30 6.5 sp|Q083L6|SPEA_SHEFN Biosynthetic arginine decarboxylase OS=Shew... 30 8.4 sp|P13361|HUNB_DROVI Protein hunchback OS=Drosophila virilis GN=... 30 8.4
>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1 Length = 894
Score = 57.4 bits (137), Expect = 5e-08 Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 4/95 (4%) Frame = +3
Query: 3 MSNIGTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPC---GEEAEVSVDLVTPEKAG 173 M N G + W T+L + G++ S E + VPC G VSV+ + P G Sbjct: 328 MKNTGNVKWSADTKLKFMWGNLT----LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEG 383
Query: 174 RYVSHWRLSAPSGQKFGHRVWVVIHVVPH-GEKSP 275 Y SHWRLS GQ+FG RVW I V P E+SP Sbjct: 384 TYTSHWRLS-HKGQQFGPRVWCSIIVDPFPSEESP 417
>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=2 Length = 966
Score = 57.4 bits (137), Expect = 5e-08 Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 4/95 (4%) Frame = +3
Query: 3 MSNIGTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPC---GEEAEVSVDLVTPEKAG 173 M N G + W T+L + G++ S E + VPC G VSV+ + P G Sbjct: 398 MKNTGNVKWSADTKLKFMWGNLT----LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEG 453
Query: 174 RYVSHWRLSAPSGQKFGHRVWVVIHVVPH-GEKSP 275 Y SHWRLS GQ+FG RVW I V P E+SP Sbjct: 454 TYTSHWRLS-HKGQQFGPRVWCSIIVDPFPSEESP 487
>sp|Q5F3N9|CF106_CHICK Uncharacterized protein C6orf106 homolog OS=Gallus gallus GN=RCJMB04_11e11 PE=2 SV=1 Length = 291
Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/83 (34%), Positives = 42/83 (50%) Frame = +3
Query: 3 MSNIGTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPCGEEAEVSVDLVTPEKAGRYV 182 + N GT WP G L ++GGD G V + E E A+VSV + +P AG Y Sbjct: 101 IQNTGTEVWPPGVCLKYVGGDQFGHVNMVMVRSLEPQ----EIADVSVQMCSPSTAGMYQ 156
Query: 183 SHWRLSAPSGQKFGHRVWVVIHV 251 WR+ +G +G +WV++ V Sbjct: 157 GQWRMCTATGLYYGDVIWVILSV 179
>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=2 SV=1 Length = 988
Score = 55.5 bits (132), Expect = 2e-07 Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Frame = +3
Query: 3 MSNIGTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPC---GEEAEVSVDLVTPEKAG 173 M N G + W T+L + G++ S E + VPC G VSV+ + P G Sbjct: 399 MKNTGNVKWNTDTKLKFMWGNLT----LASTEKKDVLVPCLKAGHVGVVSVEFIAPTLEG 454
Query: 174 RYVSHWRLSAPSGQKFGHRVWVVIHVVP 257 Y SHWRLS GQ+FG RVW I V P Sbjct: 455 TYTSHWRLS-HKGQQFGPRVWCSIIVDP 481
>sp|Q9H6K1|CF106_HUMAN Uncharacterized protein C6orf106 OS=Homo sapiens GN=C6orf106 PE=1 SV=2 Length = 298
Score = 55.1 bits (131), Expect = 2e-07 Identities = 28/83 (33%), Positives = 42/83 (50%) Frame = +3
Query: 3 MSNIGTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPCGEEAEVSVDLVTPEKAGRYV 182 + N G WP G L ++GGD G V + E E A+VSV + +P +AG Y Sbjct: 101 IQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQ----EIADVSVQMCSPSRAGMYQ 156
Query: 183 SHWRLSAPSGQKFGHRVWVVIHV 251 WR+ +G +G +WV++ V Sbjct: 157 GQWRMCTATGLYYGDVIWVILSV 179
>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1 SV=1 Length = 983
Score = 54.7 bits (130), Expect = 3e-07 Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 3/111 (2%) Frame = +3
Query: 3 MSNIGTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPC---GEEAEVSVDLVTPEKAG 173 M N G + W T+L + G++ S E + VPC G VSV+ + P G Sbjct: 400 MKNTGNVKWSADTKLKFMWGNLT----LASTEKKDVLVPCLKAGHIGVVSVEFIAPTLEG 455
Query: 174 RYVSHWRLSAPSGQKFGHRVWVVIHVVPHGEKSPQFQASLQAGEKGIEASE 326 Y HWRLS GQ+FG RVW I V P P ++ + GI +S+ Sbjct: 456 TYTLHWRLS-HKGQQFGPRVWCSIIVDPF----PSSESPVNLERDGISSSK 501
>sp|Q5BL31|CF106_DANRE Uncharacterized protein C6orf106 homolog OS=Danio rerio GN=zgc:101577 PE=2 SV=1 Length = 283
Score = 51.2 bits (121), Expect = 4e-06 Identities = 29/87 (33%), Positives = 45/87 (51%) Frame = +3
Query: 3 MSNIGTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPCGEEAEVSVDLVTPEKAGRYV 182 + N GT WP G L ++GGD G V++ + S P E ++VSV + +P G Y Sbjct: 101 IQNTGTESWPPGVCLKYVGGDQFGH---VNMVMVRSLDP-QEISDVSVQMRSPAVPGMYQ 156
Query: 183 SHWRLSAPSGQKFGHRVWVVIHVVPHG 263 WR+ +G +G +WV++ V G Sbjct: 157 GQWRMCTATGLFYGDVIWVILSVEEGG 183
>sp|Q3TT38|CF106_MOUSE Uncharacterized protein C6orf106 homolog OS=Mus musculus GN=D17Wsu92e PE=2 SV=1 Length = 291
Score = 48.1 bits (113), Expect = 3e-05 Identities = 26/83 (31%), Positives = 40/83 (48%) Frame = +3
Query: 3 MSNIGTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPCGEEAEVSVDLVTPEKAGRYV 182 + N G WP G L ++GGD G V + E E A+VSV + + +AG Y Sbjct: 101 IQNSGAEAWPTGVCLKYVGGDQFGHVNMVMVRSLEPQ----EIADVSVQMCSLSRAGMYQ 156
Query: 183 SHWRLSAPSGQKFGHRVWVVIHV 251 WR+ +G + +WV++ V Sbjct: 157 GQWRMCTDTGLYYEDVIWVILSV 179
>sp|Q8VDL9|GLIS2_MOUSE Zinc finger protein GLIS2 OS=Mus musculus GN=Glis2 PE=1 SV=1 Length = 521
Score = 36.2 bits (82), Expect = 0.12 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 14/80 (17%) Frame = +3
Query: 78 DKAVSLELPESG------VPCGEEAEVSVDLVT--------PEKAGRYVSHWRLSAPSGQ 215 DK +S ELP + C + E+ DLV PE+ RY HW A G+ Sbjct: 155 DKCLSPELPLAKQLVCRWAKCNQLFELLQDLVDHVNDHHVKPEQDARYCCHWEGCARHGR 214
Query: 216 KFGHRVWVVIHVVPHGEKSP 275 F R ++IH+ H + P Sbjct: 215 GFNARYKMLIHIRTHTNEKP 234
>sp|Q9BZE0|GLIS2_HUMAN Zinc finger protein GLIS2 OS=Homo sapiens GN=GLIS2 PE=1 SV=1 Length = 524
Score = 33.9 bits (76), Expect = 0.58 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 8/95 (8%) Frame = +3
Query: 15 GTLPWPQGTRLVHIGGDVLGTDKAVSLELPESGVPCGEEAEVSVDLVT--------PEKA 170 G L P + L L D + +L C + E+ DLV PEK Sbjct: 140 GALHLPASSFLTPPKDKCLSPDLPLPKQLVCRWAKCNQLFELLQDLVDHVNDYHVKPEKD 199
Query: 171 GRYVSHWRLSAPSGQKFGHRVWVVIHVVPHGEKSP 275 Y HW A G+ F R ++IH+ H + P Sbjct: 200 AGYCCHWEGCARHGRGFNARYKMLIHIRTHTNEKP 234
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SHX9 |
Definition |
tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
114 |
Score (bit) |
134.0 |
E-value |
5.0e-30 |
Report |
|