NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953559
Clone id TST39A01NGRL0018_B12
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_B12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGAGAAGGAAGAGGAGCGATTGGCCAGAGAAAAGAAAGCAGAGGAAAGAAAGAAACGAGA
GAGAGAGCCAGAAAAGACCAGAGAAAATGGAAAGGATCAACCTAGAGAATATGGAAGGGA
AAAGGATTCTTACAGTCAAAGGGCAAGGGATAGAGACTACAACTACCACGGAAGGGACAG
GTATACAGATCGTGAGGGAGGAAGGGATAGAGATCATGATAGGGATAGGAGGAGAGAGAG
AGATTTCTCAAAGACAAGGTCCCGCACTCCTCCCAGGTCCAATTCAAGGTCTCCAAGTCG
CCACCGAAGCAGGCGGCGTTCACGGTCGCCAGATCGCATGGCTTAGTTATGATCATCAAC
ATTATGGCCATCTTTGACCATTTTATGCAGAGAGCATTTAGGCTCATCGATTCGTCAGAA
GGTACTTGAAAAGTTCTGCATACAAGTAGGCTGGTGTTGTCCTTCTCACTTCTTTGTTTG
AAGTCTTCTGATATCTTCAGGTTGGAATCAGCCCTCCTTTTCTCCAGATACATTTTTTTT
GGAGTTTTTTGGGTACGCCGTTTCATTGTGGATATATATGTAATTGTCATGTTTATTTTC
TTTAAAAAA
■■Homology search results ■■ -
sp_hit_id P29110
Definition sp|P29110|OLEO3_BRANA Oleosin Bn-III OS=Brassica napus
Align length 30
Score (bit) 34.7
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953559|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_B12, 5'
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29110|OLEO3_BRANA Oleosin Bn-III OS=Brassica napus PE=2 SV=1       35   0.39 
sp|P29111|OLEO2_BRANA Major oleosin NAP-II (Fragment) OS=Brassic...    34   0.67 
sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyo...    32   2.5  
sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helic...    32   3.3  
sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Ar...    31   5.6  
sp|O05714|DNAK_ANAVT Chaperone protein dnaK OS=Anabaena variabil...    31   5.6  
sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helic...    30   7.4  
sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa O...    30   9.6  
sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 hom...    30   9.6  
sp|Q5B0I1|CWC25_EMENI Pre-mRNA-splicing factor cwc25 OS=Emericel...    30   9.6  
sp|Q4FZU3|CCD55_RAT Coiled-coil domain-containing protein 55 OS=...    30   9.6  
sp|P83211|HSP1_MURBR Sperm protamine P1 OS=Murex brandaris PE=1 ...    30   9.7  

>sp|P29110|OLEO3_BRANA Oleosin Bn-III OS=Brassica napus PE=2 SV=1
          Length = 195

 Score = 34.7 bits (78), Expect = 0.39
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRD-YNYHGRD 178
           +DQ    GR++D YS   RDRD YN +GRD
Sbjct: 21  RDQYSMIGRDRDQYSMMGRDRDQYNMYGRD 50



 Score = 30.4 bits (67), Expect = 7.4
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 107 EYGREKDSYSQRARDRD-YNYHGRDR 181
           +Y R++D YS   RDRD Y+  GRDR
Sbjct: 16  QYPRDRDQYSMIGRDRDQYSMMGRDR 41


>sp|P29111|OLEO2_BRANA Major oleosin NAP-II (Fragment) OS=Brassica
           napus PE=1 SV=1
          Length = 175

 Score = 33.9 bits (76), Expect = 0.67
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRD-YNYHGRD 178
           +DQ    GR++D YS   RDRD YN +GRD
Sbjct: 9   RDQYSMIGRDRDKYSMIGRDRDQYNMYGRD 38



 Score = 30.0 bits (66), Expect = 9.6
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 107 EYGREKDSYSQRARDRD-YNYHGRDR 181
           +Y R++D YS   RDRD Y+  GRDR
Sbjct: 4   QYPRDRDQYSMIGRDRDKYSMIGRDR 29


>sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23
           OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1
          Length = 834

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 12/44 (27%)
 Frame = +2

Query: 89  GKDQPREY--------GREKDSYSQRARDRDYNYH----GRDRY 184
           G+D+ R+Y        GR++D    R RDRD +Y     GRDRY
Sbjct: 101 GRDRDRDYRDGGGGGGGRDRDRNRDRDRDRDRDYRDGGGGRDRY 144


>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase
           PRP5 OS=Gibberella zeae GN=PRP5 PE=3 SV=1
          Length = 1227

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 98  QPREYGREKDSYSQRARDRDYNYHGRDR 181
           QPR   R++D    RARDRD NY  RDR
Sbjct: 69  QPRNRDRDRDRDRDRARDRD-NYRRRDR 95


>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B
           OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2
          Length = 589

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRDYNYHGRDRY 184
           +D+ RE  R++D   +R++DR  + H RDR+
Sbjct: 78  RDRDREKSRDRDRDRERSKDRQRDRHHRDRH 108


>sp|O05714|DNAK_ANAVT Chaperone protein dnaK OS=Anabaena variabilis
           (strain ATCC 29413 / PCC 7937) GN=dnaK PE=2 SV=1
          Length = 688

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRDYNY-HGRD 178
           +D PR+  RE+DSY+ R   RDY   +GRD
Sbjct: 629 RDLPRDSYRERDSYNNRDYGRDYGRDYGRD 658


>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase
           prp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC
           A1513) GN=prp5 PE=3 SV=2
          Length = 1180

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRDYNYHGRD 178
           + + R   RE+D Y +R+RDRDY     D
Sbjct: 85  RSRDRRRSRERDDYRRRSRDRDYRSRRED 113


>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa
           OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1
          Length = 471

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRDYNYHGRDR 181
           +D+ RE  REKD    R RDRD     RDR
Sbjct: 355 RDRDRERDREKDRDKDRDRDRDRRRSHRDR 384


>sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 homolog
            OS=Drosophila melanogaster GN=CG1657 PE=1 SV=2
          Length = 1712

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 92   KDQPREYGREKDSYSQRARDRDYNYHG 172
            +D+ RE  RE+D    R RDR+ ++HG
Sbjct: 1212 RDRERERDRERDRERDRERDRERDHHG 1238


>sp|Q5B0I1|CWC25_EMENI Pre-mRNA-splicing factor cwc25 OS=Emericella
           nidulans GN=cwc25 PE=3 SV=1
          Length = 415

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQR-----ARDRDYNYHGRDR 181
           +DQ ++Y R+++S S R     +RDRD +  GRDR
Sbjct: 278 RDQDQDYRRDRNSRSSRRDARSSRDRDTDAFGRDR 312
tr_hit_id A8I1P7
Definition tr|A8I1P7|A8I1P7_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 30
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953559|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_B12, 5'
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8I1P7|A8I1P7_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   2.6  
tr|B3ME69|B3ME69_DROAN GF12501 OS=Drosophila ananassae GN=GF1250...    34   5.8  
tr|Q65ZR4|Q65ZR4_BRANA Oleosin (Fragment) OS=Brassica napus GN=o...    34   7.5  
tr|Q49L62|Q49L62_BRACM Oleosin (Fragment) OS=Brassica campestris...    34   7.5  
tr|Q2F3K0|Q2F3K0_BRANA Oleosin OS=Brassica napus PE=3 SV=1             34   7.5  
tr|B3N7A5|B3N7A5_DROER GG25281 OS=Drosophila erecta GN=GG25281 P...    34   7.5  
tr|B3L114|B3L114_PLAKH Putative uncharacterized protein OS=Plasm...    34   7.5  
tr|A1Z7U8|A1Z7U8_DROME CG33757 OS=Drosophila melanogaster GN=CG3...    34   7.5  
tr|A8NB58|A8NB58_COPC7 Putative uncharacterized protein OS=Copri...    34   7.5  
tr|Q7WN89|Q7WN89_BORBR Putative branched-chain amino acid-bindin...    33   9.8  
tr|Q7W0W5|Q7W0W5_BORPA Putative branched-chain amino acid-bindin...    33   9.8  
tr|Q5CK99|Q5CK99_CRYHO Putative uncharacterized protein OS=Crypt...    33   9.8  
tr|B4NWG4|B4NWG4_DROYA GE22258 OS=Drosophila yakuba GN=GE22258 P...    33   9.8  
tr|B4HSZ6|B4HSZ6_DROSE GM20599 OS=Drosophila sechellia GN=GM2059...    33   9.8  

>tr|A8I1P7|A8I1P7_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_182641 PE=4 SV=1
          Length = 229

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRDYNYHGRDR 181
           +D  R+Y RE+D   +  RDRD +YH RDR
Sbjct: 5   RDYDRDYDRERDRGDRGDRDRDRDYHERDR 34


>tr|B3ME69|B3ME69_DROAN GF12501 OS=Drosophila ananassae GN=GF12501
           PE=4 SV=1
          Length = 177

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 284 NWTWEECGTLSLRNLSLSSYPYHDLYPFLPHDLYTCPFR 168
           N+T+  C  L  RN  +    Y  + P+LP   YTCPF+
Sbjct: 83  NFTFNVCDFLKSRNNMIIGLAYEYVRPYLPIGNYTCPFK 121


>tr|Q65ZR4|Q65ZR4_BRANA Oleosin (Fragment) OS=Brassica napus
           GN=oleosin napII PE=2 SV=1
          Length = 175

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRD-YNYHGRD 178
           +DQ    GR++D YS   RDRD YN +GRD
Sbjct: 9   RDQYSMIGRDRDKYSMIGRDRDQYNMYGRD 38


>tr|Q49L62|Q49L62_BRACM Oleosin (Fragment) OS=Brassica campestris
           PE=2 SV=1
          Length = 178

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRD-YNYHGRD 178
           +DQ    GR++D YS   RDRD YN +GRD
Sbjct: 4   RDQYSMIGRDRDKYSMIGRDRDQYNMYGRD 33


>tr|Q2F3K0|Q2F3K0_BRANA Oleosin OS=Brassica napus PE=3 SV=1
          Length = 187

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 92  KDQPREYGREKDSYSQRARDRD-YNYHGRD 178
           +DQ    GR++D YS   RDRD YN +GRD
Sbjct: 21  RDQYSMIGRDRDKYSMIGRDRDQYNMYGRD 50


>tr|B3N7A5|B3N7A5_DROER GG25281 OS=Drosophila erecta GN=GG25281 PE=4
           SV=1
          Length = 177

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 284 NWTWEECGTLSLRNLSLSSYPYHDLYPFLPHDLYTCPFR 168
           N ++  C  LS RN  + S  Y  L P++P   YTCPF+
Sbjct: 83  NISFNLCDFLSKRNNVIVSLGYEYLKPYIPMTNYTCPFK 121


>tr|B3L114|B3L114_PLAKH Putative uncharacterized protein
           OS=Plasmodium knowlesi (strain H) GN=PKH_050330 PE=4
           SV=1
          Length = 1633

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 602 KKINMTITYISTMKRRTQKTPKKMYLEKR-RADSNLKISEDFKQRSEKDNTSLLVCRTFQ 426
           K    ++TYI       QK PKK  L KR + D   KI E  K+  E  NT+ L  RT++
Sbjct: 84  KNKKYSVTYI-------QKLPKKNLLLKRWKYDLYEKIKEKMKRDHELMNTTKLCRRTYK 136

Query: 425 VPSD 414
           +P D
Sbjct: 137 LPVD 140


>tr|A1Z7U8|A1Z7U8_DROME CG33757 OS=Drosophila melanogaster
           GN=CG33757 PE=4 SV=1
          Length = 178

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 284 NWTWEECGTLSLRNLSLSSYPYHDLYPFLPHDLYTCPFR 168
           N ++  C  LS RN  + S  Y  L P++P   YTCPF+
Sbjct: 84  NISFNLCDFLSKRNNVIVSLGYEYLKPYIPMTNYTCPFK 122


>tr|A8NB58|A8NB58_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_07430 PE=4 SV=1
          Length = 558

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 86  NGKDQPREYGREKDSYSQRARDRDYNYHGRDR 181
           NG+D  RE GRE D   +R RDRDY+   RDR
Sbjct: 14  NGRD--RERGREYDRDRERDRDRDYDRDRRDR 43


>tr|Q7WN89|Q7WN89_BORBR Putative branched-chain amino acid-binding
           protein OS=Bordetella bronchiseptica GN=BB1151 PE=4 SV=1
          Length = 404

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 258 GPALLPGPIQGLQVATEAGGVHGRQIAWLSYDHQ 359
           G   L G     + A  AGG+HGR++ WLS D +
Sbjct: 53  GSGNLAGATLAFEQANAAGGIHGRKLEWLSLDDE 86