DK953500
Clone id TST39A01NGRL0017_O23
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_O23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CGGGCAGAATCTTGAGGCGGGGTAAACCTGGGTAGCATAAAAACAAGGGTGTAACAAGGC
GCCTTGAACCCCCACGACCTGGCTGCAAAATCATGTGGGCCCCCCACATGCACAGTGTGC
TCGGGCTTTTGGGGTTTAATTGGTGTCCTGGTTTAGTTCTGACATGACACCCAGGGATCC
AATTGCTGGTTTTCGTGCATCGGGGCACATTTAATGCTTTGTGTTTTTTAGTCCTGAGGC
TGAGGGTGGGAGGTGTTCTGTGGGCGCTGTACCGGAAGATCAAAGAGGCGGATCATGGGG
GAAGGCAACGGCGGCAACACAGATAGCTGCTGCGGAGGCAGCGGCGGATACAGCTACAAG
ACTACAGAGGAGGAGCAGCAGCGAAGCAGCAGCAGCAAAGATTTATGGATCTTGCCGAAC
CTGATCATGTTCACTACGCTGCAGAGAACACAATTCCTTAGCTTGCAGATTTCCCTCTCT
■■Homology search results ■■ -
sp_hit_id Q9EPX2
Definition sp|Q9EPX2|PPN_MOUSE Papilin OS=Mus musculus
Align length 48
Score (bit) 30.8
E-value 3.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953500|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_O23, 5'
(480 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9EPX2|PPN_MOUSE Papilin OS=Mus musculus GN=Papln PE=2 SV=1 31 3.4
sp|Q9D2I5|ARMC9_MOUSE LisH domain-containing protein ARMC9 OS=Mu... 30 7.4
sp|P21436|ENV_MLVHO Envelope glycoprotein OS=Hortulanus murine l... 29 9.6

>sp|Q9EPX2|PPN_MOUSE Papilin OS=Mus musculus GN=Papln PE=2 SV=1
Length = 1280

Score = 30.8 bits (68), Expect = 3.4
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Frame = -1

Query: 294 DPPL*SSGTAPTEHLPPSASGL---------KNTKH*MCPDARKPAIG 178
DP L S+G APT PP L +++ H CPD P++G
Sbjct: 594 DPNLSSAGRAPTLQRPPHQPPLRPSSGPRDCRHSPHGCCPDGHTPSLG 641


>sp|Q9D2I5|ARMC9_MOUSE LisH domain-containing protein ARMC9 OS=Mus
musculus GN=Armc9 PE=2 SV=1
Length = 817

Score = 29.6 bits (65), Expect = 7.4
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = -3

Query: 193 KTSNWIPGCHVRTKPGHQLNPKSPSTLCMWGAHMILQPGRGGSRRLVTPLFLCYPGLP 20
K W P GHQ + P+ W M P G R P F C P +P
Sbjct: 716 KPREWSPA-------GHQKSRLVPTAALGWPREMTQDPSSGHITREFVPAFTCKPQVP 766


>sp|P21436|ENV_MLVHO Envelope glycoprotein OS=Hortulanus murine
leukemia virus GN=env PE=1 SV=1
Length = 666

Score = 29.3 bits (64), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2

Query: 134 PQKPEHTVHVGGPHDFAARSWG 69
P +P H + GGP DF WG
Sbjct: 153 PHRPRHARNCGGPDDFYCAHWG 174


tr_hit_id Q5UF31
Definition tr|Q5UF31|Q5UF31_9PROT Putative uncharacterized protein OS=uncultured alpha proteobacterium EBAC2C11
Align length 85
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953500|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_O23, 5'
(480 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5UF31|Q5UF31_9PROT Putative uncharacterized protein OS=uncul... 35 1.9
tr|B8DLC1|B8DLC1_DESVM Formate dehydrogenase accessory protein O... 33 7.0
tr|Q1DVS3|Q1DVS3_COCIM Putative uncharacterized protein OS=Cocci... 33 9.2

>tr|Q5UF31|Q5UF31_9PROT Putative uncharacterized protein
OS=uncultured alpha proteobacterium EBAC2C11
GN=Red2C11_6 PE=4 SV=1
Length = 196

Score = 35.0 bits (79), Expect = 1.9
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = -3

Query: 292 SASLIFRYSAHRTPPTLSLRTKKHK--ALNVPRCTKTSNW---IPGCHVRTKPGHQLNPK 128
S L+ + PP + ++ H+ A+N R NW I G +V GHQ+NP
Sbjct: 15 SGLLVSCNTVQSKPPPVVFKSAAHQPLAINARRLEIIDNWQMPIVGHYV----GHQINPL 70

Query: 127 SPSTLCMWGAHMILQPGRGGSRRLV 53
+ + W AH +L+P GGS +V
Sbjct: 71 PSNIVADWAAH-VLRPA-GGSGEVV 93


>tr|B8DLC1|B8DLC1_DESVM Formate dehydrogenase accessory protein
OS=Desulfovibrio vulgaris (strain Miyazaki) GN=DvMF_1233
PE=4 SV=1
Length = 303

Score = 33.1 bits (74), Expect = 7.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1

Query: 117 HCACGGPT*FCSQVVGVQGALLHPCFYATQVYPASRF-CP 1
HC G ++VG +GALLH C + Y A R CP
Sbjct: 188 HCPVCGSAPLVGRLVGKEGALLHTCSFCRHEYRAKRLQCP 227


>tr|Q1DVS3|Q1DVS3_COCIM Putative uncharacterized protein
OS=Coccidioides immitis GN=CIMG_05590 PE=4 SV=1
Length = 875

Score = 32.7 bits (73), Expect = 9.2
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -1

Query: 300 PHDPPL*SSGTAPTEHLPPSASGLKNTKH*MCPDARKPAIGSLGVMSELN 151
P+ PP+ +S TAP +++PPS +T+ R+ G L +SE N
Sbjct: 295 PYRPPVAASDTAPAKYIPPSKRMQSSTESESLLRLRRQIQGHLNKLSEAN 344