DK953439 |
Clone id |
TST39A01NGRL0017_M09 |
Library |
TST39 |
Length |
599 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_M09. 5' end sequence. |
Accession |
DK953439 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GCTCGAAGTGCGCAAACATCGCTTAATGGGAATTTACATCTTGCTGGTCGAGTTATTAAG GTGTTAGCGGTGACTGAACAAATGAACATGCAAGAGCCTGGACTGGTATCTGGGGAGCTG GATGATGATGAAGGTGGTGGTTTGACTCTAACAGCTCAGTCCAGAACTCTTCTTATGCAA AAGTTAGATCGAAGTGGAACATCCACCAGTGTTACTCCGTCACATTCAGCACAGTTTGGC AATCTACCATCATCTACAAATATAGCCATGAATACTCCAACCTCACATGTAGGTTCAAGT CTTTTGCCAGGGGTGATTGGCCTCTCAAACACAGGGCTGGCTGCTTCTGCGGCTGCAGCA TCGATTGGAAGCCCTACAGAGTGCATTTTGCTGAAGAACATGTTTGATCCTGCAACAGAG ACGGATGCTGAGTTTGATCTCGACATTAAAGATGAAGTGATGCAAGAGTGTTCAAAGTTT GGTGCTGTGAAACACATTTATGTGGACAAGGAATGTGGATGTCTAGCTGAAGAGTGCATC AGTGCCTTGACGACTATCAAGTTGCTGGACATGACATTGGTTATTCAACTGGATATGTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5RC80 |
Definition |
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii |
Align length |
180 |
Score (bit) |
60.5 |
E-value |
6.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q337U3 |
Definition |
tr|Q337U3|Q337U3_ORYSJ cDNA clone:001-019-C07, full insert sequence OS=Oryza sativa subsp. japonica |
Align length |
174 |
Score (bit) |
137.0 |
E-value |
5.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953439|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_M09, 5' (599 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q337U3|Q337U3_ORYSJ cDNA clone:001-019-C07, full insert seque... 137 5e-31 tr|Q337U2|Q337U2_ORYSJ cDNA clone:J013102K13, full insert sequen... 137 5e-31 tr|Q0IXG5|Q0IXG5_ORYSJ Os10g0439600 protein (Fragment) OS=Oryza ... 137 5e-31 tr|A3C546|A3C546_ORYSJ Putative uncharacterized protein OS=Oryza... 137 5e-31 tr|A2Z7T0|A2Z7T0_ORYSI Putative uncharacterized protein OS=Oryza... 137 5e-31 tr|B8ANW8|B8ANW8_ORYSI Putative uncharacterized protein OS=Oryza... 132 2e-29 tr|A7PKX0|A7PKX0_VITVI Chromosome chr7 scaffold_20, whole genome... 131 3e-29 tr|A7P8E1|A7P8E1_VITVI Chromosome chr3 scaffold_8, whole genome ... 129 1e-28 tr|B4FWC4|B4FWC4_MAIZE Putative uncharacterized protein OS=Zea m... 129 2e-28 tr|B4FBM8|B4FBM8_MAIZE Putative uncharacterized protein OS=Zea m... 129 2e-28 tr|Q9ZVW9|Q9ZVW9_ARATH Putative splicing factor (At2g16940) OS=A... 127 4e-28 tr|Q8LPG3|Q8LPG3_ARATH Putative splicing factor OS=Arabidopsis t... 127 4e-28 tr|Q9FIB8|Q9FIB8_ARATH Splicing factor-like protein OS=Arabidops... 127 6e-28 tr|Q93Y25|Q93Y25_ARATH Splicing factor-like protein OS=Arabidops... 127 6e-28 tr|Q84WH4|Q84WH4_ARATH Splicing factor-like protein OS=Arabidops... 127 6e-28 tr|Q56XB8|Q56XB8_ARATH Splicing factor-like protein OS=Arabidops... 127 6e-28 tr|A9TD65|A9TD65_PHYPA Predicted protein OS=Physcomitrella paten... 125 2e-27 tr|A5AQI8|A5AQI8_VITVI Putative uncharacterized protein OS=Vitis... 124 3e-27 tr|A9TV48|A9TV48_PHYPA Predicted protein OS=Physcomitrella paten... 124 5e-27 tr|Q8LE50|Q8LE50_ARATH Putative splicing factor OS=Arabidopsis t... 123 9e-27 tr|Q10RM6|Q10RM6_ORYSJ Transposon protein, putative, CACTA, En/S... 120 8e-26 tr|B7FLZ8|B7FLZ8_MEDTR Putative uncharacterized protein OS=Medic... 119 1e-25 tr|Q0DV27|Q0DV27_ORYSJ Os03g0153000 protein OS=Oryza sativa subs... 112 1e-23 tr|Q9FT01|Q9FT01_CICAR Putative splicing factor (Fragment) OS=Ci... 90 9e-17 tr|B3RJ64|B3RJ64_TRIAD Putative uncharacterized protein OS=Trich... 77 1e-12 tr|Q7PN29|Q7PN29_ANOGA AGAP008433-PA (Fragment) OS=Anopheles gam... 74 8e-12 tr|B0XJP6|B0XJP6_CULQU Splicing factor OS=Culex quinquefasciatus... 71 4e-11 tr|B0X5Y4|B0X5Y4_CULQU Splicing factor OS=Culex quinquefasciatus... 71 4e-11 tr|A3AE82|A3AE82_ORYSJ Putative uncharacterized protein OS=Oryza... 71 5e-11 tr|Q9VM49|Q9VM49_DROME CG11266, isoform A OS=Drosophila melanoga... 70 9e-11
>tr|Q337U3|Q337U3_ORYSJ cDNA clone:001-019-C07, full insert sequence OS=Oryza sativa subsp. japonica GN=LOC_Os10g30370 PE=2 SV=1 Length = 339
Score = 137 bits (345), Expect = 5e-31 Identities = 83/174 (47%), Positives = 104/174 (59%), Gaps = 4/174 (2%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 A++AQ SLNG L +AGRVIKV AVTEQ +Q G + A SR +LM+ Sbjct: 119 AKAAQ-SLNGQLDIAGRVIKVSAVTEQAGLQVGGATTGDLDDDEGGGLALNASSRAMLMR 177
Query: 181 KLDRSGTSTSVTPSHSAQFGN----LPSSTNIAMNTPTSHVGSSLLPGVIGLSNTGLXXX 348 KLDRSGT+TS+T N LPS++ PT+ + +P + + + Sbjct: 178 KLDRSGTATSITGGIGIPGVNTSVELPSASVTGAPLPTTSLIQPTIPAIGTVPGIQIPGT 237
Query: 349 XXXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 IGSPTE +LLKNMFDPA ETD +FDLDIKD+V ECSKFGAV HI+VDK Sbjct: 238 QSAD-IGSPTEFLLLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIFVDK 290
>tr|Q337U2|Q337U2_ORYSJ cDNA clone:J013102K13, full insert sequence OS=Oryza sativa subsp. japonica GN=LOC_Os10g30370 PE=2 SV=1 Length = 320
Score = 137 bits (345), Expect = 5e-31 Identities = 83/174 (47%), Positives = 104/174 (59%), Gaps = 4/174 (2%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 A++AQ SLNG L +AGRVIKV AVTEQ +Q G + A SR +LM+ Sbjct: 100 AKAAQ-SLNGQLDIAGRVIKVSAVTEQAGLQVGGATTGDLDDDEGGGLALNASSRAMLMR 158
Query: 181 KLDRSGTSTSVTPSHSAQFGN----LPSSTNIAMNTPTSHVGSSLLPGVIGLSNTGLXXX 348 KLDRSGT+TS+T N LPS++ PT+ + +P + + + Sbjct: 159 KLDRSGTATSITGGIGIPGVNTSVELPSASVTGAPLPTTSLIQPTIPAIGTVPGIQIPGT 218
Query: 349 XXXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 IGSPTE +LLKNMFDPA ETD +FDLDIKD+V ECSKFGAV HI+VDK Sbjct: 219 QSAD-IGSPTEFLLLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIFVDK 271
>tr|Q0IXG5|Q0IXG5_ORYSJ Os10g0439600 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os10g0439600 PE=4 SV=1 Length = 330
Score = 137 bits (345), Expect = 5e-31 Identities = 83/174 (47%), Positives = 104/174 (59%), Gaps = 4/174 (2%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 A++AQ SLNG L +AGRVIKV AVTEQ +Q G + A SR +LM+ Sbjct: 110 AKAAQ-SLNGQLDIAGRVIKVSAVTEQAGLQVGGATTGDLDDDEGGGLALNASSRAMLMR 168
Query: 181 KLDRSGTSTSVTPSHSAQFGN----LPSSTNIAMNTPTSHVGSSLLPGVIGLSNTGLXXX 348 KLDRSGT+TS+T N LPS++ PT+ + +P + + + Sbjct: 169 KLDRSGTATSITGGIGIPGVNTSVELPSASVTGAPLPTTSLIQPTIPAIGTVPGIQIPGT 228
Query: 349 XXXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 IGSPTE +LLKNMFDPA ETD +FDLDIKD+V ECSKFGAV HI+VDK Sbjct: 229 QSAD-IGSPTEFLLLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIFVDK 281
>tr|A3C546|A3C546_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_030418 PE=4 SV=1 Length = 533
Score = 137 bits (345), Expect = 5e-31 Identities = 83/174 (47%), Positives = 104/174 (59%), Gaps = 4/174 (2%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 A++AQ SLNG L +AGRVIKV AVTEQ +Q G + A SR +LM+ Sbjct: 313 AKAAQ-SLNGQLDIAGRVIKVSAVTEQAGLQVGGATTGDLDDDEGGGLALNASSRAMLMR 371
Query: 181 KLDRSGTSTSVTPSHSAQFGN----LPSSTNIAMNTPTSHVGSSLLPGVIGLSNTGLXXX 348 KLDRSGT+TS+T N LPS++ PT+ + +P + + + Sbjct: 372 KLDRSGTATSITGGIGIPGVNTSVELPSASVTGAPLPTTSLIQPTIPAIGTVPGIQIPGT 431
Query: 349 XXXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 IGSPTE +LLKNMFDPA ETD +FDLDIKD+V ECSKFGAV HI+VDK Sbjct: 432 QSAD-IGSPTEFLLLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIFVDK 484
>tr|A2Z7T0|A2Z7T0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_33765 PE=4 SV=1 Length = 549
Score = 137 bits (345), Expect = 5e-31 Identities = 83/174 (47%), Positives = 104/174 (59%), Gaps = 4/174 (2%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 A++AQ SLNG L +AGRVIKV AVTEQ +Q G + A SR +LM+ Sbjct: 329 AKAAQ-SLNGQLDIAGRVIKVSAVTEQAGLQVGGATTGDLDDDEGGGLALNASSRAMLMR 387
Query: 181 KLDRSGTSTSVTPSHSAQFGN----LPSSTNIAMNTPTSHVGSSLLPGVIGLSNTGLXXX 348 KLDRSGT+TS+T N LPS++ PT+ + +P + + + Sbjct: 388 KLDRSGTATSITGGIGIPGVNTSVELPSASVTGAPLPTTSLIQPTIPAIGTVPGIQIPGT 447
Query: 349 XXXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 IGSPTE +LLKNMFDPA ETD +FDLDIKD+V ECSKFGAV HI+VDK Sbjct: 448 QSAD-IGSPTEFLLLKNMFDPAVETDPDFDLDIKDDVQDECSKFGAVNHIFVDK 500
>tr|B8ANW8|B8ANW8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10059 PE=4 SV=1 Length = 567
Score = 132 bits (332), Expect = 2e-29 Identities = 82/175 (46%), Positives = 102/175 (58%), Gaps = 5/175 (2%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIK--VLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLL 174 A++AQ SLNG L +AGRVIK V AVT+Q +Q G+ + A SR LL Sbjct: 345 AKAAQ-SLNGQLDIAGRVIKASVSAVTDQAGVQVSGVTTGDLDDDEGGGLALNASSRALL 403
Query: 175 MQKLDRSGTSTSVTPSHSAQFGNLPSSTNIAMNTPTSHVGSSLLPGVIGLSNT---GLXX 345 MQKLDRSG +TS+T + N A V +S+LP V GL + L Sbjct: 404 MQKLDRSGVTTSLTAGIAGTGLNTSVGLPPASVLGAPPVAASVLPTVPGLGSVPGVSLPI 463
Query: 346 XXXXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 P+EC+LLKNMFDP+ ETD +FDLDIKD+V +ECSKFG VKHI+VDK Sbjct: 464 TTQAIETAPPSECLLLKNMFDPSVETDPDFDLDIKDDVQEECSKFGQVKHIFVDK 518
>tr|A7PKX0|A7PKX0_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019345001 PE=4 SV=1 Length = 539
Score = 131 bits (329), Expect = 3e-29 Identities = 76/173 (43%), Positives = 106/173 (61%), Gaps = 3/173 (1%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 A++AQ +LNG L +AGR+IKV +VT+ + +Q+ G + AQSR LLMQ Sbjct: 324 AKAAQ-NLNGKLDIAGRIIKVSSVTDHIGVQDAGAKAADFDDDDGGGLSLNAQSRALLMQ 382
Query: 181 KLDRSGTSTSVTPSHSAQF--GNLPSSTNIAMN-TPTSHVGSSLLPGVIGLSNTGLXXXX 351 KLDR+G ++S+ S G+ P+ I+++ + V + LP T + Sbjct: 383 KLDRTGIASSIAGSLGVPMLNGSAPNQQAISLSINGQAAVSAPALP-------TQVVTSP 435
Query: 352 XXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 +G+PTEC+LLKNMFDPATE D +FDLDIK+EV +ECS FG VKHIYV+K Sbjct: 436 ASEPVGTPTECLLLKNMFDPATEIDPDFDLDIKEEVQEECSNFGRVKHIYVEK 488
>tr|A7P8E1|A7P8E1_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036145001 PE=4 SV=1 Length = 577
Score = 129 bits (324), Expect = 1e-28 Identities = 80/183 (43%), Positives = 104/183 (56%), Gaps = 13/183 (7%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 AR+AQ SLNG L +AGR IKV VT+Q +Q+ G + A+SR +LMQ Sbjct: 345 ARAAQ-SLNGQLDIAGRTIKVSVVTDQAGLQDIGANAGDFDDDEGGGLSLNARSRAILMQ 403
Query: 181 KLDRSGTSTSVTPSHSAQFGN---LPSSTNIAMNTP------TSHVGSSLLPGVIGLSNT 333 KLDRSGT+ + S + N LP ST + + + + +PG+ GL Sbjct: 404 KLDRSGTTPGIAGSLGSPVLNNPGLPLSTAPILGAAPVVSPLVAPLVQAPVPGLAGLPGA 463
Query: 334 GLXXXXXXXX----IGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIY 501 GL IG P+EC++LKNMFDP ET+ +FDLDIK++V ECSKFG VKHIY Sbjct: 464 GLQVPAVTVPSIDTIGVPSECLMLKNMFDPKLETEPDFDLDIKEDVQDECSKFGTVKHIY 523
Query: 502 VDK 510 VDK Sbjct: 524 VDK 526
>tr|B4FWC4|B4FWC4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 537
Score = 129 bits (323), Expect = 2e-28 Identities = 80/175 (45%), Positives = 103/175 (58%), Gaps = 5/175 (2%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 A++AQ SLNG L +AGRVIKV AVT+ + MQ G + A SR LM Sbjct: 319 AKAAQ-SLNGQLDIAGRVIKVSAVTDHVGMQASGATTGDLDDDEGGGLALNASSRAALML 377
Query: 181 KLDRSGTSTSVTPSHSAQFGNLPSSTNIAMNTPTSHVGSSLLPGVIGLSNTG-----LXX 345 KLDRSGT+TS+T A +P+++ I + +SLLP + + L Sbjct: 378 KLDRSGTATSLTRGIGAAGVAVPATSVIG-----APGAASLLPPTVAAVGSVPGAPVLPV 432
Query: 346 XXXXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 + +PTE +LLKNMFDPA ETD +FDLDI+D+V ECSKFGAVKHI+VDK Sbjct: 433 TTQNVTMSTPTEFLLLKNMFDPALETDPDFDLDIRDDVQDECSKFGAVKHIFVDK 487
>tr|B4FBM8|B4FBM8_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 318
Score = 129 bits (323), Expect = 2e-28 Identities = 80/175 (45%), Positives = 103/175 (58%), Gaps = 5/175 (2%) Frame = +1
Query: 1 ARSAQTSLNGNLHLAGRVIKVLAVTEQMNMQEPGLVSXXXXXXXXXXXXXXAQSRTLLMQ 180 A++AQ SLNG L +AGRVIKV AVT+ + MQ G + A SR LM Sbjct: 100 AKAAQ-SLNGQLDIAGRVIKVSAVTDHVGMQASGATTGDLDDDEGGGLALNASSRAALML 158
Query: 181 KLDRSGTSTSVTPSHSAQFGNLPSSTNIAMNTPTSHVGSSLLPGVIGLSNTG-----LXX 345 KLDRSGT+TS+T A +P+++ I + +SLLP + + L Sbjct: 159 KLDRSGTATSLTRGIGAAGVAVPATSVIG-----APGAASLLPPTVAAVGSVPGAPVLPV 213
Query: 346 XXXXXXIGSPTECILLKNMFDPATETDAEFDLDIKDEVMQECSKFGAVKHIYVDK 510 + +PTE +LLKNMFDPA ETD +FDLDI+D+V ECSKFGAVKHI+VDK Sbjct: 214 TTQNVTMSTPTEFLLLKNMFDPALETDPDFDLDIRDDVQDECSKFGAVKHIFVDK 268
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