DK953406
Clone id TST39A01NGRL0017_K24
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_K24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATCATTTTGAGAGAGAGAGAGGGCGAGAGAAGAGAGCTATGGCGGTGCCTGCTCAAGGTG
CTCTCATTCCAGGCGAGGCGTGTCGCCTCCTTCCCAGAAGGTCTACTCTAGGGTTTCAGG
TCTCCTCCTTCTGTGGTAATACACGCCTCTTCATATTCAACCATTCCTCCTCAAACCCGG
AAACCCCTCTCCTCGGAATTGCCCGTGCATCGGCGTCCCATCCACACATCCCCAAACAGT
TCAGAGAAGAGAATTTGAAAGATGGATTGATGGAAAACTACAAAAATGTGCCGAGCAGTT
TATATGGTTTGTCTTCATCTCAAATGGACATGTTTATGACAGAGGACAACCCAATCAAGC
GTTCAGCTGAAAGAGTCACTGAGAAAAGCATTGCATCTGCAAAACATTACTTGGAGGGCA
CTGGTATGTGGAACCTCACAACCTTGCAAAGTGGACCTTCTCGCCTAAGCATGAGTGTGA
GCATGTATCGAGGAGGAGGTGGAGGTGGATATGGCCGCCCCAAGACATCTCCTCCTGATC
TGCCTTCTCTACTACTGGATGCTAGAATTTGCTATCTTGGGAT
■■Homology search results ■■ -
sp_hit_id Q9XJ35
Definition sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana
Align length 159
Score (bit) 121.0
E-value 3.0e-27
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953406|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_K24, 5'
(583 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic sub... 121 3e-27
sp|Q5IBH7|SPDYA_MOUSE Speedy protein A OS=Mus musculus GN=Spdya ... 34 0.47
sp|Q8R496|SPDYA_RAT Speedy protein A OS=Rattus norvegicus GN=Spd... 31 3.9
sp|Q8VIJ6|SFPQ_MOUSE Splicing factor, proline- and glutamine-ric... 26 5.5
sp|Q6BER5|NU301_CAEEL Nucleosome-remodeling factor subunit NURF3... 30 6.7

>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic
subunit-related protein 1, chloroplastic OS=Arabidopsis
thaliana GN=CLPR1 PE=1 SV=1
Length = 387

Score = 121 bits (303), Expect = 3e-27
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 6/159 (3%)
Frame = +3

Query: 123 SSFCGNTRLFIFNHSSSN-PETPLLGIARASA---SHPHIPKQFREENLKDGLMENYKNV 290
S F ++LF N S P ASA S HIPKQFR +NLKDG+M+N+KNV
Sbjct: 27 SPFMSGSKLFSSNMPCSTVPRRTRRSHCFASAKDMSFDHIPKQFRGDNLKDGVMQNFKNV 86

Query: 291 PSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIASAKHYLEGTGMWNLTTLQSGPS-RL 467
P YGL+S+QMDMFMTED+P++R AE+VTE+SI+S +YL G+W+++ + + + R
Sbjct: 87 PQYFYGLNSAQMDMFMTEDSPVRRQAEKVTEESISSRNNYLNNGGIWSMSGMNAADARRY 146

Query: 468 SMSVSM-XXXXXXXXXXXPKTXXXXXXXXXXXARICYLG 581
SMSV M P+T ARICYLG
Sbjct: 147 SMSVQMYRGGGGGGGSERPRTAPPDLPSLLLDARICYLG 185


>sp|Q5IBH7|SPDYA_MOUSE Speedy protein A OS=Mus musculus GN=Spdya
PE=1 SV=1
Length = 310

Score = 34.3 bits (77), Expect = 0.47
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1

Query: 121 SPPSVVIHASSYSTIPPQTRKPLSSELPVHRRPIHTSPNSSE 246
+PP+V IH S S QTRKP+S + P+ + S N+++
Sbjct: 10 TPPTVTIHVKSGSNRSHQTRKPISLKRPILKDSWEASENNAQ 51


>sp|Q8R496|SPDYA_RAT Speedy protein A OS=Rattus norvegicus GN=Spdya
PE=2 SV=1
Length = 312

Score = 31.2 bits (69), Expect = 3.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1

Query: 121 SPPSVVIHASSYSTIPPQTRKPLSSELPV 207
+PP+V +H S S QTRKP+S + P+
Sbjct: 10 TPPTVTVHVKSGSNRSHQTRKPVSLKRPI 38


>sp|Q8VIJ6|SFPQ_MOUSE Splicing factor, proline- and glutamine-rich
OS=Mus musculus GN=Sfpq PE=1 SV=1
Length = 699

Score = 26.2 bits (56), Expect(2) = 5.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2

Query: 176 PGNPSPRNCPCIGVPSTHPQTVQR 247
PG P P P +G P HP+ R
Sbjct: 205 PGGPKPGGGPGMGAPGGHPKPPHR 228



Score = 21.9 bits (45), Expect(2) = 5.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1

Query: 124 PPSVVIHASSYSTIPPQTRKP 186
PP +S ST PPQT P
Sbjct: 158 PPPPSTPSSGVSTTPPQTGGP 178


>sp|Q6BER5|NU301_CAEEL Nucleosome-remodeling factor subunit
NURF301-like OS=Caenorhabditis elegans GN=nurf-1 PE=1
SV=1
Length = 2266

Score = 30.4 bits (67), Expect = 6.7
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1

Query: 61 LSFQARRVASFPEGLL*GFRSPPSVVIHASSYSTIPPQTRKPLSSELPVHRRPIHTSPNS 240
+S QA AS P G+ P +I + Y+ +P RKP +S RP+ T P +
Sbjct: 1306 VSPQAHGYASTPPP---GYHQPQPNIIRQAGYNQLP---RKPTTSPFNFQSRPVATIPTT 1359

Query: 241 SEKR 252
+ R
Sbjct: 1360 PQLR 1363


tr_hit_id B8LS00
Definition tr|B8LS00|B8LS00_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 93
Score (bit) 148.0
E-value 2.0e-34
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953406|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_K24, 5'
(583 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LS00|B8LS00_PICSI Putative uncharacterized protein OS=Picea... 148 2e-34
tr|B8LL17|B8LL17_PICSI Putative uncharacterized protein OS=Picea... 148 2e-34
tr|A7QL58|A7QL58_VITVI ATP-dependent Clp protease proteolytic su... 140 7e-32
tr|A9TVY1|A9TVY1_PHYPA ATP-dependent Clp protease proteolytic su... 137 3e-31
tr|A9SI89|A9SI89_PHYPA ATP-dependent Clp protease proteolytic su... 129 1e-28
tr|A7QU07|A7QU07_VITVI Chromosome undetermined scaffold_175, who... 117 5e-25
tr|Q6L4S1|Q6L4S1_ORYSJ ATP-dependent Clp protease proteolytic su... 110 6e-23
tr|B8AXJ0|B8AXJ0_ORYSI Putative uncharacterized protein OS=Oryza... 110 6e-23
tr|A3B7E0|A3B7E0_ORYSJ ATP-dependent Clp protease proteolytic su... 110 6e-23
tr|B6U5D1|B6U5D1_MAIZE Endopeptidase Clp OS=Zea mays PE=2 SV=1 108 2e-22
tr|B4F9Z4|B4F9Z4_MAIZE Putative uncharacterized protein OS=Zea m... 108 2e-22
tr|B4FYJ0|B4FYJ0_MAIZE Putative uncharacterized protein OS=Zea m... 51 4e-05
tr|A0ZJS9|A0ZJS9_NODSP Putative uncharacterized protein OS=Nodul... 35 3.1
tr|B7LQY9|B7LQY9_ESCFE Putative uncharacterized protein OS=Esche... 34 5.2
tr|B8JJC0|B8JJC0_MOUSE Speedy homolog A (Drosophila) OS=Mus musc... 34 5.2
tr|B8JJB9|B8JJB9_MOUSE Speedy homolog A (Drosophila) OS=Mus musc... 34 5.2
tr|B2RWC8|B2RWC8_MOUSE Spdya protein OS=Mus musculus GN=Spdya PE... 34 5.2
tr|B6KG41|B6KG41_TOXGO Putative uncharacterized protein OS=Toxop... 34 6.9
tr|Q2TWH0|Q2TWH0_ASPOR Predicted protein OS=Aspergillus oryzae G... 33 8.8
tr|B8NWK3|B8NWK3_ASPFL Putative uncharacterized protein OS=Asper... 33 8.8
tr|Q13RA6|Q13RA6_BURXL Sensor protein OS=Burkholderia xenovorans... 33 9.0

>tr|B8LS00|B8LS00_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 393

Score = 148 bits (374), Expect = 2e-34
Identities = 70/93 (75%), Positives = 81/93 (87%)
Frame = +3

Query: 207 ASASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEK 386
A AS HIPKQFR+ENLK+GLMEN++N+P SLYGL+ SQMDMF+TED+PIKR AERVTE+
Sbjct: 62 AKASFDHIPKQFRQENLKEGLMENFQNIPESLYGLNPSQMDMFLTEDSPIKRQAERVTEE 121

Query: 387 SIASAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485
SI SAKHY EGTGMW+LT L GPSRLSMS +M
Sbjct: 122 SITSAKHYREGTGMWSLTGLNDGPSRLSMSANM 154


>tr|B8LL17|B8LL17_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 393

Score = 148 bits (374), Expect = 2e-34
Identities = 70/93 (75%), Positives = 81/93 (87%)
Frame = +3

Query: 207 ASASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEK 386
A AS HIPKQFR+ENLK+GLMEN++N+P SLYGL+ SQMDMF+TED+PIKR AERVTE+
Sbjct: 62 AKASFDHIPKQFRQENLKEGLMENFQNIPESLYGLNPSQMDMFLTEDSPIKRQAERVTEE 121

Query: 387 SIASAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485
SI SAKHY EGTGMW+LT L GPSRLSMS +M
Sbjct: 122 SITSAKHYREGTGMWSLTGLNDGPSRLSMSANM 154


>tr|A7QL58|A7QL58_VITVI ATP-dependent Clp protease proteolytic
subunit OS=Vitis vinifera GN=GSVIVT00001455001 PE=3 SV=1
Length = 388

Score = 140 bits (352), Expect = 7e-32
Identities = 83/160 (51%), Positives = 99/160 (61%), Gaps = 7/160 (4%)
Frame = +3

Query: 123 SSFCGNTRLFIFNHSSSNPETPLLGIAR------ASASHPHIPKQFREENLKDGLMENYK 284
SSF T+LF S P+ + R A AS HIPKQFRE NL+DGLMENYK
Sbjct: 32 SSFLHCTKLF------SAPKLGRSAVRRGFRSPSAKASFDHIPKQFREGNLQDGLMENYK 85

Query: 285 NVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIASAKHYLEGTGMWNLTTLQS-GPS 461
NVP YGLS SQMDMFMTEDNPI R +ERVTE+SI+SA++Y++ GMW+L+ + GPS
Sbjct: 86 NVPQYFYGLSPSQMDMFMTEDNPISRQSERVTEESISSARNYMDNGGMWSLSGVNDRGPS 145

Query: 462 RLSMSVSMXXXXXXXXXXXPKTXXXXXXXXXXXARICYLG 581
+ SMSVSM P+T ARICYLG
Sbjct: 146 KYSMSVSM--YRGGRGSGRPRTAPPDLPSLLLDARICYLG 183


>tr|A9TVY1|A9TVY1_PHYPA ATP-dependent Clp protease proteolytic
subunit OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_151597 PE=3 SV=1
Length = 391

Score = 137 bits (346), Expect = 3e-31
Identities = 88/192 (45%), Positives = 105/192 (54%), Gaps = 11/192 (5%)
Frame = +3

Query: 39 MAVPAQGALIPGEACRLLPRRSTLGFQVSSFCGNTRLFIFNHS-----------SSNPET 185
M V A G L+ A S+ GF+ SSF G RL + S E+
Sbjct: 1 MVVVAPGGLVAAPATL-----SSCGFR-SSFAGE-RLQVSGCGLGQKAQQEAVDSRRTES 53

Query: 186 PLLGIARASASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRS 365
LG+ + S HIPKQFR++ LKDGL +N++ P SLYGLS SQMD FM E+NP +R
Sbjct: 54 RFLGVRAQAGSFNHIPKQFRQDGLKDGLTQNFETCPPSLYGLSPSQMDTFMVENNPYQRQ 113

Query: 366 AERVTEKSIASAKHYLEGTGMWNLTTLQSGPSRLSMSVSMXXXXXXXXXXXPKTXXXXXX 545
AERVTE SI+SA Y +GTGMW+ T L PSRLSMSVSM PKT
Sbjct: 114 AERVTEASISSASRYQDGTGMWSATGLDGAPSRLSMSVSM-YRGGGSAGGRPKTAPPDLP 172

Query: 546 XXXXXARICYLG 581
ARICYLG
Sbjct: 173 SLLLDARICYLG 184


>tr|A9SI89|A9SI89_PHYPA ATP-dependent Clp protease proteolytic
subunit OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_130350 PE=3 SV=1
Length = 348

Score = 129 bits (324), Expect = 1e-28
Identities = 68/124 (54%), Positives = 79/124 (63%)
Frame = +3

Query: 210 SASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKS 389
+ S HIPKQFR++ LKDGL N+ + P SLYGL+ SQMDMFM E+NP +R AERV+E S
Sbjct: 19 AGSFDHIPKQFRKDGLKDGLTRNFDSCPPSLYGLNPSQMDMFMVENNPYQRQAERVSEAS 78

Query: 390 IASAKHYLEGTGMWNLTTLQSGPSRLSMSVSMXXXXXXXXXXXPKTXXXXXXXXXXXARI 569
I+SA Y EGTG+W T L PSRLSMSVSM PKT ARI
Sbjct: 79 ISSASRYQEGTGLWTATGLDGAPSRLSMSVSM-YRGGGSAGGRPKTAPPDLPSLLLDARI 137

Query: 570 CYLG 581
CYLG
Sbjct: 138 CYLG 141


>tr|A7QU07|A7QU07_VITVI Chromosome undetermined scaffold_175, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00006632001 PE=4 SV=1
Length = 184

Score = 117 bits (293), Expect = 5e-25
Identities = 59/94 (62%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Frame = +3

Query: 207 ASASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEK 386
A S HIPKQFRE NL+ GLMENYKNVP YGL+ SQMDMFMTEDNPI + +ERVTE+
Sbjct: 79 AKVSFDHIPKQFREGNLQYGLMENYKNVPQYFYGLTPSQMDMFMTEDNPISQLSERVTEE 138

Query: 387 SIASAKHYLEGTGMWNLTTLQS-GPSRLSMSVSM 485
+I+S+ + L+ GMW+L+ + GPS+ SMSVSM
Sbjct: 139 NISSSHNCLDNGGMWSLSGVNDRGPSKYSMSVSM 172


>tr|Q6L4S1|Q6L4S1_ORYSJ ATP-dependent Clp protease proteolytic
subunit OS=Oryza sativa subsp. japonica GN=P0663C08.7
PE=2 SV=1
Length = 386

Score = 110 bits (275), Expect = 6e-23
Identities = 52/90 (57%), Positives = 71/90 (78%)
Frame = +3

Query: 216 SHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIA 395
++ HIPKQFREENLKDGLM+NYKNVP LYGLS +Q++MFM +DNP R ++RVTE+SI+
Sbjct: 53 NYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDRQSQRVTEESIS 112

Query: 396 SAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485
+++ Y E GM+NL+ + GP+ SM + M
Sbjct: 113 ASRSYDE-FGMYNLSGMHEGPAGYSMGMGM 141


>tr|B8AXJ0|B8AXJ0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21214 PE=4 SV=1
Length = 386

Score = 110 bits (275), Expect = 6e-23
Identities = 52/90 (57%), Positives = 71/90 (78%)
Frame = +3

Query: 216 SHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIA 395
++ HIPKQFREENLKDGLM+NYKNVP LYGLS +Q++MFM +DNP R ++RVTE+SI+
Sbjct: 53 NYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDRQSQRVTEESIS 112

Query: 396 SAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485
+++ Y E GM+NL+ + GP+ SM + M
Sbjct: 113 ASRSYDE-FGMYNLSGMHEGPAGYSMGMGM 141


>tr|A3B7E0|A3B7E0_ORYSJ ATP-dependent Clp protease proteolytic
subunit OS=Oryza sativa subsp. japonica GN=OsJ_018962
PE=3 SV=1
Length = 398

Score = 110 bits (275), Expect = 6e-23
Identities = 52/90 (57%), Positives = 71/90 (78%)
Frame = +3

Query: 216 SHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIA 395
++ HIPKQFREENLKDGLM+NYKNVP LYGLS +Q++MFM +DNP R ++RVTE+SI+
Sbjct: 53 NYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDRQSQRVTEESIS 112

Query: 396 SAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485
+++ Y E GM+NL+ + GP+ SM + M
Sbjct: 113 ASRSYDE-FGMYNLSGMHEGPAGYSMGMGM 141


>tr|B6U5D1|B6U5D1_MAIZE Endopeptidase Clp OS=Zea mays PE=2 SV=1
Length = 388

Score = 108 bits (271), Expect = 2e-22
Identities = 50/90 (55%), Positives = 71/90 (78%)
Frame = +3

Query: 216 SHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIA 395
++ HIPKQFREENLKDGLM+NYK+VP LYGLS++QM+MFM +DNP R +++VTE+S++
Sbjct: 52 NYDHIPKQFREENLKDGLMDNYKHVPQFLYGLSAAQMEMFMNDDNPYNRQSQKVTEESVS 111

Query: 396 SAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485
+A+ Y E GM+ L+ + GP+ SM + M
Sbjct: 112 AARSYDE-FGMYTLSGMHEGPASYSMGMGM 140