DK953406 |
Clone id |
TST39A01NGRL0017_K24 |
Library |
TST39 |
Length |
583 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_K24. 5' end sequence. |
Accession |
DK953406 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL390Contig1 |
Sequence |
ATCATTTTGAGAGAGAGAGAGGGCGAGAGAAGAGAGCTATGGCGGTGCCTGCTCAAGGTG CTCTCATTCCAGGCGAGGCGTGTCGCCTCCTTCCCAGAAGGTCTACTCTAGGGTTTCAGG TCTCCTCCTTCTGTGGTAATACACGCCTCTTCATATTCAACCATTCCTCCTCAAACCCGG AAACCCCTCTCCTCGGAATTGCCCGTGCATCGGCGTCCCATCCACACATCCCCAAACAGT TCAGAGAAGAGAATTTGAAAGATGGATTGATGGAAAACTACAAAAATGTGCCGAGCAGTT TATATGGTTTGTCTTCATCTCAAATGGACATGTTTATGACAGAGGACAACCCAATCAAGC GTTCAGCTGAAAGAGTCACTGAGAAAAGCATTGCATCTGCAAAACATTACTTGGAGGGCA CTGGTATGTGGAACCTCACAACCTTGCAAAGTGGACCTTCTCGCCTAAGCATGAGTGTGA GCATGTATCGAGGAGGAGGTGGAGGTGGATATGGCCGCCCCAAGACATCTCCTCCTGATC TGCCTTCTCTACTACTGGATGCTAGAATTTGCTATCTTGGGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9XJ35 |
Definition |
sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana |
Align length |
159 |
Score (bit) |
121.0 |
E-value |
3.0e-27 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LS00 |
Definition |
tr|B8LS00|B8LS00_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
93 |
Score (bit) |
148.0 |
E-value |
2.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953406|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0017_K24, 5' (583 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LS00|B8LS00_PICSI Putative uncharacterized protein OS=Picea... 148 2e-34 tr|B8LL17|B8LL17_PICSI Putative uncharacterized protein OS=Picea... 148 2e-34 tr|A7QL58|A7QL58_VITVI ATP-dependent Clp protease proteolytic su... 140 7e-32 tr|A9TVY1|A9TVY1_PHYPA ATP-dependent Clp protease proteolytic su... 137 3e-31 tr|A9SI89|A9SI89_PHYPA ATP-dependent Clp protease proteolytic su... 129 1e-28 tr|A7QU07|A7QU07_VITVI Chromosome undetermined scaffold_175, who... 117 5e-25 tr|Q6L4S1|Q6L4S1_ORYSJ ATP-dependent Clp protease proteolytic su... 110 6e-23 tr|B8AXJ0|B8AXJ0_ORYSI Putative uncharacterized protein OS=Oryza... 110 6e-23 tr|A3B7E0|A3B7E0_ORYSJ ATP-dependent Clp protease proteolytic su... 110 6e-23 tr|B6U5D1|B6U5D1_MAIZE Endopeptidase Clp OS=Zea mays PE=2 SV=1 108 2e-22 tr|B4F9Z4|B4F9Z4_MAIZE Putative uncharacterized protein OS=Zea m... 108 2e-22 tr|B4FYJ0|B4FYJ0_MAIZE Putative uncharacterized protein OS=Zea m... 51 4e-05 tr|A0ZJS9|A0ZJS9_NODSP Putative uncharacterized protein OS=Nodul... 35 3.1 tr|B7LQY9|B7LQY9_ESCFE Putative uncharacterized protein OS=Esche... 34 5.2 tr|B8JJC0|B8JJC0_MOUSE Speedy homolog A (Drosophila) OS=Mus musc... 34 5.2 tr|B8JJB9|B8JJB9_MOUSE Speedy homolog A (Drosophila) OS=Mus musc... 34 5.2 tr|B2RWC8|B2RWC8_MOUSE Spdya protein OS=Mus musculus GN=Spdya PE... 34 5.2 tr|B6KG41|B6KG41_TOXGO Putative uncharacterized protein OS=Toxop... 34 6.9 tr|Q2TWH0|Q2TWH0_ASPOR Predicted protein OS=Aspergillus oryzae G... 33 8.8 tr|B8NWK3|B8NWK3_ASPFL Putative uncharacterized protein OS=Asper... 33 8.8 tr|Q13RA6|Q13RA6_BURXL Sensor protein OS=Burkholderia xenovorans... 33 9.0
>tr|B8LS00|B8LS00_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 393
Score = 148 bits (374), Expect = 2e-34 Identities = 70/93 (75%), Positives = 81/93 (87%) Frame = +3
Query: 207 ASASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEK 386 A AS HIPKQFR+ENLK+GLMEN++N+P SLYGL+ SQMDMF+TED+PIKR AERVTE+ Sbjct: 62 AKASFDHIPKQFRQENLKEGLMENFQNIPESLYGLNPSQMDMFLTEDSPIKRQAERVTEE 121
Query: 387 SIASAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485 SI SAKHY EGTGMW+LT L GPSRLSMS +M Sbjct: 122 SITSAKHYREGTGMWSLTGLNDGPSRLSMSANM 154
>tr|B8LL17|B8LL17_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 393
Score = 148 bits (374), Expect = 2e-34 Identities = 70/93 (75%), Positives = 81/93 (87%) Frame = +3
Query: 207 ASASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEK 386 A AS HIPKQFR+ENLK+GLMEN++N+P SLYGL+ SQMDMF+TED+PIKR AERVTE+ Sbjct: 62 AKASFDHIPKQFRQENLKEGLMENFQNIPESLYGLNPSQMDMFLTEDSPIKRQAERVTEE 121
Query: 387 SIASAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485 SI SAKHY EGTGMW+LT L GPSRLSMS +M Sbjct: 122 SITSAKHYREGTGMWSLTGLNDGPSRLSMSANM 154
>tr|A7QL58|A7QL58_VITVI ATP-dependent Clp protease proteolytic subunit OS=Vitis vinifera GN=GSVIVT00001455001 PE=3 SV=1 Length = 388
Score = 140 bits (352), Expect = 7e-32 Identities = 83/160 (51%), Positives = 99/160 (61%), Gaps = 7/160 (4%) Frame = +3
Query: 123 SSFCGNTRLFIFNHSSSNPETPLLGIAR------ASASHPHIPKQFREENLKDGLMENYK 284 SSF T+LF S P+ + R A AS HIPKQFRE NL+DGLMENYK Sbjct: 32 SSFLHCTKLF------SAPKLGRSAVRRGFRSPSAKASFDHIPKQFREGNLQDGLMENYK 85
Query: 285 NVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIASAKHYLEGTGMWNLTTLQS-GPS 461 NVP YGLS SQMDMFMTEDNPI R +ERVTE+SI+SA++Y++ GMW+L+ + GPS Sbjct: 86 NVPQYFYGLSPSQMDMFMTEDNPISRQSERVTEESISSARNYMDNGGMWSLSGVNDRGPS 145
Query: 462 RLSMSVSMXXXXXXXXXXXPKTXXXXXXXXXXXARICYLG 581 + SMSVSM P+T ARICYLG Sbjct: 146 KYSMSVSM--YRGGRGSGRPRTAPPDLPSLLLDARICYLG 183
>tr|A9TVY1|A9TVY1_PHYPA ATP-dependent Clp protease proteolytic subunit OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_151597 PE=3 SV=1 Length = 391
Score = 137 bits (346), Expect = 3e-31 Identities = 88/192 (45%), Positives = 105/192 (54%), Gaps = 11/192 (5%) Frame = +3
Query: 39 MAVPAQGALIPGEACRLLPRRSTLGFQVSSFCGNTRLFIFNHS-----------SSNPET 185 M V A G L+ A S+ GF+ SSF G RL + S E+ Sbjct: 1 MVVVAPGGLVAAPATL-----SSCGFR-SSFAGE-RLQVSGCGLGQKAQQEAVDSRRTES 53
Query: 186 PLLGIARASASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRS 365 LG+ + S HIPKQFR++ LKDGL +N++ P SLYGLS SQMD FM E+NP +R Sbjct: 54 RFLGVRAQAGSFNHIPKQFRQDGLKDGLTQNFETCPPSLYGLSPSQMDTFMVENNPYQRQ 113
Query: 366 AERVTEKSIASAKHYLEGTGMWNLTTLQSGPSRLSMSVSMXXXXXXXXXXXPKTXXXXXX 545 AERVTE SI+SA Y +GTGMW+ T L PSRLSMSVSM PKT Sbjct: 114 AERVTEASISSASRYQDGTGMWSATGLDGAPSRLSMSVSM-YRGGGSAGGRPKTAPPDLP 172
Query: 546 XXXXXARICYLG 581 ARICYLG Sbjct: 173 SLLLDARICYLG 184
>tr|A9SI89|A9SI89_PHYPA ATP-dependent Clp protease proteolytic subunit OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_130350 PE=3 SV=1 Length = 348
Score = 129 bits (324), Expect = 1e-28 Identities = 68/124 (54%), Positives = 79/124 (63%) Frame = +3
Query: 210 SASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKS 389 + S HIPKQFR++ LKDGL N+ + P SLYGL+ SQMDMFM E+NP +R AERV+E S Sbjct: 19 AGSFDHIPKQFRKDGLKDGLTRNFDSCPPSLYGLNPSQMDMFMVENNPYQRQAERVSEAS 78
Query: 390 IASAKHYLEGTGMWNLTTLQSGPSRLSMSVSMXXXXXXXXXXXPKTXXXXXXXXXXXARI 569 I+SA Y EGTG+W T L PSRLSMSVSM PKT ARI Sbjct: 79 ISSASRYQEGTGLWTATGLDGAPSRLSMSVSM-YRGGGSAGGRPKTAPPDLPSLLLDARI 137
Query: 570 CYLG 581 CYLG Sbjct: 138 CYLG 141
>tr|A7QU07|A7QU07_VITVI Chromosome undetermined scaffold_175, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006632001 PE=4 SV=1 Length = 184
Score = 117 bits (293), Expect = 5e-25 Identities = 59/94 (62%), Positives = 73/94 (77%), Gaps = 1/94 (1%) Frame = +3
Query: 207 ASASHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEK 386 A S HIPKQFRE NL+ GLMENYKNVP YGL+ SQMDMFMTEDNPI + +ERVTE+ Sbjct: 79 AKVSFDHIPKQFREGNLQYGLMENYKNVPQYFYGLTPSQMDMFMTEDNPISQLSERVTEE 138
Query: 387 SIASAKHYLEGTGMWNLTTLQS-GPSRLSMSVSM 485 +I+S+ + L+ GMW+L+ + GPS+ SMSVSM Sbjct: 139 NISSSHNCLDNGGMWSLSGVNDRGPSKYSMSVSM 172
>tr|Q6L4S1|Q6L4S1_ORYSJ ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa subsp. japonica GN=P0663C08.7 PE=2 SV=1 Length = 386
Score = 110 bits (275), Expect = 6e-23 Identities = 52/90 (57%), Positives = 71/90 (78%) Frame = +3
Query: 216 SHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIA 395 ++ HIPKQFREENLKDGLM+NYKNVP LYGLS +Q++MFM +DNP R ++RVTE+SI+ Sbjct: 53 NYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDRQSQRVTEESIS 112
Query: 396 SAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485 +++ Y E GM+NL+ + GP+ SM + M Sbjct: 113 ASRSYDE-FGMYNLSGMHEGPAGYSMGMGM 141
>tr|B8AXJ0|B8AXJ0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21214 PE=4 SV=1 Length = 386
Score = 110 bits (275), Expect = 6e-23 Identities = 52/90 (57%), Positives = 71/90 (78%) Frame = +3
Query: 216 SHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIA 395 ++ HIPKQFREENLKDGLM+NYKNVP LYGLS +Q++MFM +DNP R ++RVTE+SI+ Sbjct: 53 NYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDRQSQRVTEESIS 112
Query: 396 SAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485 +++ Y E GM+NL+ + GP+ SM + M Sbjct: 113 ASRSYDE-FGMYNLSGMHEGPAGYSMGMGM 141
>tr|A3B7E0|A3B7E0_ORYSJ ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa subsp. japonica GN=OsJ_018962 PE=3 SV=1 Length = 398
Score = 110 bits (275), Expect = 6e-23 Identities = 52/90 (57%), Positives = 71/90 (78%) Frame = +3
Query: 216 SHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIA 395 ++ HIPKQFREENLKDGLM+NYKNVP LYGLS +Q++MFM +DNP R ++RVTE+SI+ Sbjct: 53 NYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDRQSQRVTEESIS 112
Query: 396 SAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485 +++ Y E GM+NL+ + GP+ SM + M Sbjct: 113 ASRSYDE-FGMYNLSGMHEGPAGYSMGMGM 141
>tr|B6U5D1|B6U5D1_MAIZE Endopeptidase Clp OS=Zea mays PE=2 SV=1 Length = 388
Score = 108 bits (271), Expect = 2e-22 Identities = 50/90 (55%), Positives = 71/90 (78%) Frame = +3
Query: 216 SHPHIPKQFREENLKDGLMENYKNVPSSLYGLSSSQMDMFMTEDNPIKRSAERVTEKSIA 395 ++ HIPKQFREENLKDGLM+NYK+VP LYGLS++QM+MFM +DNP R +++VTE+S++ Sbjct: 52 NYDHIPKQFREENLKDGLMDNYKHVPQFLYGLSAAQMEMFMNDDNPYNRQSQKVTEESVS 111
Query: 396 SAKHYLEGTGMWNLTTLQSGPSRLSMSVSM 485 +A+ Y E GM+ L+ + GP+ SM + M Sbjct: 112 AARSYDE-FGMYTLSGMHEGPASYSMGMGM 140
|